- b -

• bah_chi_compute_energy_sp2() : core::scoring::hbonds
• bah_chi_compute_energy_sp3() : core::scoring::hbonds
• bases_are_coplanar() : core::pose::rna
• bases_form_a_hydrogen_bond() : core::pose::rna
• bb_independent_rotamers() : core::pack::rotamer_set
• bb_rmsd() : core::scoring
• bb_rmsd_including_O() : core::scoring
• bicubic_interpolation() : core::pack::dunbrack
• biggest_residue_deviation_no_super() : core::scoring
• biggest_residue_deviation_no_super_subset() : core::scoring
• bin_by_seq_separation() : core::scoring::constraints
• blank_atom_id_domain_map() : core::pose::copydofs
• bond_order_to_property() : core::chemical
• bonding_distance_threshold() : core::io::pdb
• build_acceptor_acceptor_waters() : core::pack::rotamer_set
• build_chemical_edge() : core::conformation
• build_dependent_water_rotamers() : core::pack::rotamer_set
• build_dna_rotamers() : core::pack::rotamer_set
• build_donor_acceptor_waters() : core::pack::rotamer_set
• build_donor_donor_waters() : core::pack::rotamer_set
• build_five_prime_phosphate_rotamers() : core::pack::rotamer_set
• build_fixed_O_water_rotamers_independent() : core::pack::rotamer_set
• build_independent_water_rotamers() : core::pack::rotamer_set
• build_jump_edge() : core::conformation
• build_lib_dna_rotamers() : core::pack::rotamer_set
• build_moving_O_bridge_waters() : core::pack::rotamer_set
• build_moving_O_water_rotamers_dependent() : core::pack::rotamer_set
• build_moving_O_water_rotamers_independent() : core::pack::rotamer_set
• build_optimal_water_O_on_donor() : core::pack::rotamer_set , core::scoring::methods
• build_optimal_water_Os_on_acceptor() : core::pack::rotamer_set , core::scoring::methods
• build_polymer_edge() : core::conformation
• build_pose() : core::import_pose
• build_pose_as_is() : core::import_pose
• build_pose_as_is1() : core::io::pdb
• build_pose_as_is2() : core::import_pose
• build_pose_from_pdb_as_is() : core::io::pdb
• build_proton_chi_rotamers() : core::pack::rotamer_set
• build_random_dna_rotamers() : core::pack::rotamer_set
• build_residue_tree() : core::conformation
• build_rna_chi_rotamers() : core::pack::rotamer_set
• build_rna_rotamers() : core::pack::rotamer_set
• build_rotamers_from_rotamer_bins() : core::pack::rotamer_set
• build_three_prime_phosphate_rotamers() : core::pack::rotamer_set
• build_tree() : core::conformation
• burial3class_weight_initializer() : core::scoring::hbonds
• burial_weight() : core::scoring::hbonds