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2015.02
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- g -
gaussian_deriv() :
core::scoring::constraints
gdtha() :
core::scoring
gdtsc() :
core::scoring
generate_enum_header_file() :
update_ResidueType_enum_files
generate_files() :
update_ResidueType_enum_files
generate_mappings_source_file() :
update_ResidueType_enum_files
GEOMETRIES() :
core::scoring::methods
get_2way_orientation() :
core::scoring
get_A() :
core::scoring::electron_density
get_abego() :
core::util
get_AIDs() :
core::pose::motif
get_all_comments() :
core::pose
get_all_score_line_strings() :
core::pose
get_anchor_and_root_atoms() :
core::conformation
get_anchor_atomno() :
core::conformation
get_angles() :
core::scoring
get_asymm_unit_fold_tree() :
core::conformation::symmetry
get_asymmetric_pose_copy_from_symmetric_pose() :
core::pose::symmetry
get_atoms_ala() :
core::pose::motif
get_atoms_ala_downstream() :
core::pose::motif
get_atoms_arg() :
core::pose::motif
get_atoms_arg_downstream() :
core::pose::motif
get_atoms_asn() :
core::pose::motif
get_atoms_asn_downstream() :
core::pose::motif
get_atoms_asp() :
core::pose::motif
get_atoms_asp_downstream() :
core::pose::motif
get_atoms_cys() :
core::pose::motif
get_atoms_cys_downstream() :
core::pose::motif
get_atoms_gln() :
core::pose::motif
get_atoms_gln_downstream() :
core::pose::motif
get_atoms_glu() :
core::pose::motif
get_atoms_glu_downstream() :
core::pose::motif
get_atoms_gly() :
core::pose::motif
get_atoms_gly_downstream() :
core::pose::motif
get_atoms_his() :
core::pose::motif
get_atoms_his_downstream() :
core::pose::motif
get_atoms_ile() :
core::pose::motif
get_atoms_ile_downstream() :
core::pose::motif
get_atoms_leu() :
core::pose::motif
get_atoms_leu_downstream() :
core::pose::motif
get_atoms_lys() :
core::pose::motif
get_atoms_lys_downstream() :
core::pose::motif
get_atoms_met() :
core::pose::motif
get_atoms_met_downstream() :
core::pose::motif
get_atoms_phe() :
core::pose::motif
get_atoms_phe_downstream() :
core::pose::motif
get_atoms_pro() :
core::pose::motif
get_atoms_pro_downstream() :
core::pose::motif
get_atoms_ser() :
core::pose::motif
get_atoms_ser_downstream() :
core::pose::motif
get_atoms_thr() :
core::pose::motif
get_atoms_thr_downstream() :
core::pose::motif
get_atoms_trp() :
core::pose::motif
get_atoms_trp_downstream() :
core::pose::motif
get_atoms_tyr() :
core::pose::motif
get_atoms_tyr_downstream() :
core::pose::motif
get_atoms_val() :
core::pose::motif
get_atoms_val_downstream() :
core::pose::motif
get_backbone_reference_frame() :
core::pose::motif
get_backbone_reference_frame_atomids() :
core::pose::motif
get_backbone_reference_frame_atomids_with_downstream() :
core::pose::motif
get_base_pair_params() :
core::scoring::dna
get_base_pair_params_old() :
core::scoring::dna
get_base_pair_stub() :
core::scoring::dna
get_base_pair_stub_slow() :
core::scoring::dna
get_base_pair_y_axis_atom_xyz() :
core::scoring::dna
get_base_pucker() :
core::scoring::dna
get_base_step_params() :
core::scoring::dna
get_base_stub() :
core::scoring::dna
get_bins() :
core::scoring::motif
get_bond() :
core::chemical
get_bool_idx() :
core::scoring::rna::data
get_buildingblock_and_neighbor_subs() :
core::pose::symmetry
get_burial_3() :
core::scoring::hbonds
get_CA_vectors() :
core::scoring::dssp
get_center_of_mass() :
core::pose
get_chain2range() :
core::conformation::symmetry
get_chain_connections() :
core::pose::full_model_info
get_chain_for_full_model_resnum() :
core::pose::full_model_info
get_chain_for_resnum() :
core::pose::full_model_info
get_chain_from_chain_id() :
core::pose
get_chain_from_jump_id() :
core::pose
get_chain_id_from_chain() :
core::pose
get_chain_id_from_jump_id() :
core::pose
get_chain_ids_from_chain() :
core::pose
get_chain_residues() :
core::pose
get_chains_from_cutpoint_open() :
core::pose::full_model_info
get_chains_from_pdb_info() :
core::pose::full_model_info
get_chains_full() :
core::pose::full_model_info
get_chemical_root_and_anchor_atomnos() :
core::conformation
get_chirality_sign() :
core::io::pdb
get_closest_sister() :
core::io::pdb
get_comment() :
core::pose
get_component_contiguous_foldtree() :
core::conformation::symmetry
get_component_lower_bound() :
core::pose::symmetry
get_component_of_residue() :
core::pose::symmetry
get_component_upper_bound() :
core::pose::symmetry
get_connecting_atoms() :
core::chemical
get_connection_domains() :
core::pose::full_model_info
get_cst_fa_file_option() :
core::scoring::constraints
get_cst_file_option() :
core::scoring::constraints
get_cterminal_peptide_bond_reference_frame() :
core::pose::motif
get_cterminal_peptide_bond_reference_frame_atomids() :
core::pose::motif
get_D_equivalent() :
core::chemical
get_delta_magnetic_anisotropy_deriv() :
core::scoring::rna::chemical_shift
get_density_map() :
core::scoring::electron_density_atomwise
get_DFIRE_potential() :
core::scoring::methods::dfire
get_DNA_backbone_bin() :
core::scoring::dna
get_edge_from_num() :
core::chemical::rna
get_element_color() :
core::chemical
get_environment_dependent_weight() :
core::scoring::hbonds
get_epsilon_torsions() :
core::chemical::rna
get_fade_correction() :
core::scoring::rna
get_fixed_domain_from_full_model_info_const() :
core::pose::full_model_info
get_frame_ala() :
core::pose::motif
get_frame_arg() :
core::pose::motif
get_frame_asn() :
core::pose::motif
get_frame_asp() :
core::pose::motif
get_frame_cys() :
core::pose::motif
get_frame_gln() :
core::pose::motif
get_frame_glu() :
core::pose::motif
get_frame_gly() :
core::pose::motif
get_frame_his() :
core::pose::motif
get_frame_ile() :
core::pose::motif
get_frame_leu() :
core::pose::motif
get_frame_lys() :
core::pose::motif
get_frame_met() :
core::pose::motif
get_frame_phe() :
core::pose::motif
get_frame_pro() :
core::pose::motif
get_frame_ser() :
core::pose::motif
get_frame_thr() :
core::pose::motif
get_frame_trp() :
core::pose::motif
get_frame_tyr() :
core::pose::motif
get_frame_val() :
core::pose::motif
get_frame_vee() :
core::pose::motif
get_full_edge_from_num() :
core::chemical::rna
get_full_intracomponent_and_neighbor_resis() :
core::pose::symmetry
get_full_intracomponent_and_neighbor_subpose() :
core::pose::symmetry
get_full_intracomponent_and_neighbor_subs() :
core::pose::symmetry
get_full_intracomponent_neighbor_resis() :
core::pose::symmetry
get_full_intracomponent_neighbor_subpose() :
core::pose::symmetry
get_full_intracomponent_neighbor_subs() :
core::pose::symmetry
get_full_intracomponent_resis() :
core::pose::symmetry
get_full_intracomponent_subpose() :
core::pose::symmetry
get_full_intracomponent_subs() :
core::pose::symmetry
get_full_LW_orientation_from_num() :
core::chemical::rna
get_full_orientation_from_num() :
core::chemical::rna
get_full_torsions() :
core::chemical::rna
get_glycosidic_bond_residues() :
core::pose::carbohydrates
get_glycosidic_torsion() :
core::pose::carbohydrates
get_hash_excluding_chain() :
core::pose
get_hash_from_chain() :
core::pose
get_hb_acc_chem_type() :
core::scoring::hbonds
get_hb_don_chem_type() :
core::scoring::hbonds
get_hbe_acc_hybrid() :
core::scoring::hbonds
get_hbond_energies() :
core::scoring::hbonds
get_hbond_weight_type() :
core::scoring::hbonds
get_idx() :
core::scoring::rna::data
get_input_domain_from_full_model_info_const() :
core::pose::full_model_info
get_intracomponent_and_interneighbor_resis() :
core::pose::symmetry
get_intracomponent_and_interneighbor_subpose() :
core::pose::symmetry
get_intracomponent_and_interneighbor_subs() :
core::pose::symmetry
get_intracomponent_and_intraneighbor_resis() :
core::pose::symmetry
get_intracomponent_and_intraneighbor_subpose() :
core::pose::symmetry
get_intracomponent_and_intraneighbor_subs() :
core::pose::symmetry
get_intracomponent_and_neighbor_resis() :
core::pose::symmetry
get_intracomponent_and_neighbor_subpose() :
core::pose::symmetry
get_intracomponent_and_neighbor_subs() :
core::pose::symmetry
get_intracomponent_resis() :
core::pose::symmetry
get_intracomponent_subpose() :
core::pose::symmetry
get_intracomponent_subs() :
core::pose::symmetry
get_joint_id() :
core::scoring::methods::dfire
get_jump_id_from_chain() :
core::pose
get_jump_id_from_chain_id() :
core::pose
get_jump_ids_from_chain() :
core::pose
get_jump_ids_from_chain_ids() :
core::pose
get_jump_name_to_components() :
core::pose::symmetry
get_jump_name_to_subunits() :
core::pose::symmetry
get_km() :
core::scoring::electron_density
get_L_equivalent() :
core::chemical
get_legrand_2way_orientation() :
core::scoring::sasa
get_legrand_atomic_overlap() :
core::scoring::sasa
get_legrand_orientation() :
core::scoring::sasa
get_legrand_sasa_angles() :
core::scoring::sasa
get_legrand_sasa_masks() :
core::scoring::sasa
get_line3() :
core::scoring::electron_density::SplineInterp
get_line4() :
core::scoring::electron_density::SplineInterp
get_lines_from_file_data() :
core::chemical::carbohydrates
,
core::chemical
get_masks() :
core::scoring
get_maximum_scores() :
core::sequence
get_membrane_depth_dependent_weight() :
core::scoring::hbonds
get_midstep_stub() :
core::scoring::dna
get_motif_atom_mask() :
core::scoring::motif
get_move_elements_from_full_model_info() :
core::pose::full_model_info
get_move_elements_from_full_model_info_const() :
core::pose::full_model_info
get_moving_res_from_full_model_info() :
core::pose::full_model_info
get_nbrs() :
core::scoring::motif
get_nearest_neighbor() :
core::conformation
get_neighbor_resis() :
core::pose::symmetry
get_neighbor_subpose() :
core::pose::symmetry
get_neighbor_subs() :
core::pose::symmetry
get_nterminal_peptide_bond_reference_frame() :
core::pose::motif
get_nterminal_peptide_bond_reference_frame_atomids() :
core::pose::motif
get_num_bytes() :
core::scoring
get_number_base_stacks() :
core::pose::rna
get_number_missing_residues_and_connections() :
core::pose::full_model_info
get_orientation() :
core::scoring
,
core::scoring::packstat::old
get_orientation_from_num() :
core::chemical::rna
get_overlap() :
core::scoring
,
core::scoring::packstat::old
get_pairing_geometry() :
core::scoring::dssp
get_parallel_h_for_arg() :
core::scoring::methods
get_peptide_bond_reference_frame() :
core::pose::motif
get_peptide_bond_reference_frame_atomids() :
core::pose::motif
get_pleating() :
core::scoring::dssp
get_position_in_vector() :
core::scoring::carbon_hbonds
,
core::scoring::rna
get_preferred_jump_pair_for_docking_domains() :
core::pose::full_model_info
get_rb_number() :
core::id
get_rb_type() :
core::id
get_reference_atoms() :
core::pose::carbohydrates
get_reference_atoms_for_1st_omega() :
core::pose::carbohydrates
get_reference_atoms_for_phi() :
core::pose::carbohydrates
get_reference_atoms_for_psi() :
core::pose::carbohydrates
get_res_aa_from_BASE_name() :
core::scoring::rna::chemical_shift
get_res_list_const() :
core::pose::full_model_info
get_res_list_from_full_model_info() :
core::pose::full_model_info
get_res_list_from_full_model_info_const() :
core::pose::full_model_info
get_res_num_from_pdb_info() :
core::pose::full_model_info
get_residue() :
core::pose::full_model_info
get_residue_connections() :
core::conformation
get_residue_current_energy() :
core::pack
get_residue_pair_rt6() :
core::scoring::motif
get_residue_pair_xform() :
core::scoring::motif
get_residue_path_distances() :
core::chemical
get_residue_weight_by_ss() :
core::scoring::methods
get_resis() :
core::pose::symmetry
get_resnum() :
core::pose
get_resnum_list() :
core::pose
get_resnum_list_ordered() :
core::pose
get_resnum_to_subunit_component() :
core::pose::symmetry
get_restag() :
core::scoring::methods
get_rho_and_z() :
core::scoring::rna::chemical_shift
get_ring_current_deriv() :
core::scoring::rna::chemical_shift
get_ring_current_term_derivatives() :
core::scoring::rna::chemical_shift
get_rna_base_centroid() :
core::chemical::rna
get_rna_base_coordinate_system() :
core::chemical::rna
get_rna_base_coordinate_system_from_CS_params() :
core::scoring::rna::chemical_shift
get_rna_data_info() :
core::io::rna
get_root_atomno() :
core::conformation
get_root_residue_root_atomno() :
core::conformation
get_rosetta_hatom_name() :
core::scoring::rna::chemical_shift
get_rpp_charge() :
core::chemical
get_sample_res_for_pose() :
core::pose::full_model_info
get_sasa() :
core::scoring::motif
get_sasa_dot_locations() :
core::scoring::packstat
get_sasa_method_from_string() :
core::scoring::sasa
get_sasa_radii_parameter_name() :
core::scoring::sasa
get_sasa_radii_set_from_string() :
core::scoring::sasa
get_sc_bb_sasa() :
core::scoring::sasa
get_sc_bb_sasa_per_res() :
core::scoring::sasa
get_score_function() :
core::scoring
get_score_function_legacy() :
core::scoring
get_score_functionName() :
core::scoring
get_score_line_string() :
core::pose
get_section_name() :
core::scoring::constraints
get_seq_sep() :
core::scoring::hbonds
get_sequence_len() :
core::pose
get_sha1_hash_excluding_chain() :
core::pose
get_sidechain_reference_frame() :
core::pose::motif
get_sidechain_reference_frame_atomids() :
core::pose::motif
get_sidechain_reference_frame_atomids_with_downstream() :
core::pose::motif
get_ssdep_weight() :
core::scoring::hbonds
get_stub_stub_params() :
core::scoring::dna
get_subpose() :
core::pose::symmetry
get_subunit_name_to_component() :
core::pose::symmetry
get_surf_tot() :
core::scoring::packing
get_surf_vol() :
core::scoring::packing
get_surf_vol_deriv() :
core::scoring::packing
get_sym_aware_jump_num() :
core::pose::symmetry
get_symdof_subunits() :
core::pose::symmetry
get_symm_axis() :
core::pose::symmetry
get_tag() :
core::io::rna
get_tags() :
core::io::rna
get_token() :
core::pack::task
get_torsion_bin() :
core::conformation
get_total_energy_for_state() :
core::pack
get_watson_crick_base_pair_atoms() :
core::chemical::rna
get_WC_atom() :
core::chemical::rna
get_y_axis() :
core::scoring::dna
get_y_axis_atoms() :
core::scoring::dna
get_z_axis() :
core::scoring::dna
getDensityMap() :
core::scoring::electron_density
getDensityMap_legacy() :
core::scoring::electron_density
getMLweight() :
core::util
getMLweight_cart() :
core::util
getPhenixInterface() :
core::scoring::cryst
getPoseExtraScore() :
core::pose
GetPossibleTypesForAtom() :
core::chemical::gasteiger
getxform() :
core::fragment
grad3() :
core::scoring::electron_density::SplineInterp
grad4() :
core::scoring::electron_density::SplineInterp
guess_torsion_type_of_dof_id() :
core::conformation::symmetry
gzip() :
core::io::silent
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