- t -

• T() : core::pack::interaction_graph , core::pack::task
• t() : core::scoring::hbonds
• T() : core::scoring
• tag_from_line() : core::chemical
• tag_from_pdb_fname() : core::scoring::motif
• tag_from_pose() : core::pose
• tag_into_pose() : core::pose
• TALARIS_2013() : core::scoring
• theta_torsion_beta_aa() : core::id
• to_string() : core::id , core::pose::full_model_info
• tokenize_line() : core::pack::task
• tors_deriv_to_cartesian() : core::optimization
• torsional_derivative_from_cartesian_derivatives() : core::optimization
• total_energy_from_pose() : core::pose
• ToUpper() : core::scoring::packstat
• tr() : core::chemical::gasteiger
• TR() : core::chemical::gasteiger , core::chemical::orbitals , core::chemical::rna , core::chemical::sdf
• tr() : core::chemical::sdf
• TR() : core::chemical
• tr() : core::chemical
• TR() : core::chemical , core::coarse , core::conformation::parametric , core::conformation::symmetry , core::conformation , core::fragment::picking_old::vall::eval , core::fragment::picking_old::vall
• tr() : core::fragment , core::id , core::import_pose::pose_stream , core::import_pose
• TR() : core::import_pose , core::indexed_structure_store , core::init , core::io::pdb , core::io::raw_data , core::io::rna , core::io::sequence_comparation
• tr() : core::io::silent
• TR() : core::kinematics
• tr() : core::kinematics
• TR() : core::kinematics::tree , core::optimization::symmetry , core::optimization , core::pack::annealer , core::pack::dunbrack::cenrot , core::pack::dunbrack , core::pack::interaction_graph , core::pack::rotamer_set , core::pack::scmin , core::pack::task::operation
• tr() : core::pack::task
• TR() : core::pack::task , core::pack , core::pose::symmetry , core::pose
• tr() : core::pose , core::scoring::constraints
• TR() : core::scoring::constraints
• tr() : core::scoring::constraints
• TR() : core::scoring::constraints
• tr() : core::scoring::constraints
• TR() : core::scoring::cryst
• tr() : core::scoring::custom_pair_distance
• TR() : core::scoring::disulfides , core::scoring::dna
• tr() : core::scoring::dssp
• TR() : core::scoring::electron_density , core::scoring::electron_density_atomwise
• tr() : core::scoring::geometric_solvation , core::scoring::hbonds
• TR() : core::scoring::interface_ , core::scoring::methods::dfire , core::scoring::methods
• tr() : core::scoring::methods
• TR() : core::scoring::mm , core::scoring::nv , core::scoring::orbitals , core::scoring::packing , core::scoring::saxs , core::scoring::symmetry , core::scoring
• tr() : core::scoring
• TR() : core::scoring , core::scoring::vdwaals
• tr() : core::sequence
• TR() : core::util
• TR_BGEDGE() : core::pack::interaction_graph
• TR_BGNODE() : core::pack::interaction_graph
• TR_dump_pdb_dummy() : core::io::pdb
• TR_EDGE() : core::pack::interaction_graph
• TR_HIG() : core::pack::interaction_graph
• TR_NODE() : core::pack::interaction_graph
• TR_PatchOperations() : core::chemical
• TR_STATS() : core::pack::interaction_graph
• traced_dump_pdb() : core::io::pdb
• TRACER() : core::scoring::constraints
• transfer_jumps() : core::pose
• transfer_phi_psi() : core::pose
• transitive_map() : core::sequence
• TRcs() : core::scoring::packstat
• trFormFactor() : core::scoring::saxs
• trFormFactorManager() : core::scoring::saxs
• tricubic_interpolation() : core::pack::dunbrack
• trie_vs_path() : core::scoring::trie
• trie_vs_trie() : core::scoring::trie
• trKillHairpinsIO() : core::scoring
• trMinMultiHarmonicFunc() : core::scoring::func
• trSAXSEnergy() : core::scoring::saxs
• TS() : core::scoring::cryst , core::util
• tt() : core::pack::rotamer_set::symmetry , core::pack::rotamer_set , core::pack
• turn_off_hbonds_to_ester_oxygens() : core::chemical
• tw() : core::chemical
• two_body() : core::scoring
• two_body_sum() : core::scoring
• type_map_add() : core::scoring::packstat