- h -

• h : protocols::sic_dock::Rose
• h1_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H1_t_name_ : protocols::antibody::Ab_TemplateInfo
• H1_t_pose_ : protocols::antibody::Ab_TemplateInfo
• h2_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H2_t_name_ : protocols::antibody::Ab_TemplateInfo
• H2_t_pose_ : protocols::antibody::Ab_TemplateInfo
• H3_base_library : protocols::antibody_legacy::CDRH3Modeler
• H3_base_library_ : protocols::antibody::H3CterInsert , protocols::antibody_legacy::AntibodyModeler
• h3_base_type_to_enum_ : protocols::antibody::AntibodyEnumManager
• h3_base_type_to_string_ : protocols::antibody::AntibodyEnumManager
• h3_cter_insert_mover_ : protocols::antibody::ModelCDRH3
• h3_filter_ : protocols::antibody::AntibodyModelerProtocol
• H3_filter_ : protocols::antibody::H3PerturbCCD , protocols::antibody::H3RefineCCD , protocols::antibody::RefineOneCDRLoop
• h3_filter_ : protocols::antibody::SnugDock , protocols::antibody::SnugDockProtocol
• H3_filter_ : protocols::antibody_legacy::CDRH3Modeler
• h3_filter_tolerance_ : protocols::antibody::AntibodyModelerProtocol , protocols::antibody::SnugDock , protocols::antibody::SnugDockProtocol
• h3_flank_ : protocols::antibody_legacy::CDRH3Modeler
• h3_fraction_ : protocols::antibody::H3PerturbCCD
• h3_no_stem_graft_ : protocols::antibody::GraftCDRLoopsProtocol
• h3_perturb_ccd_build_ : protocols::antibody::ModelCDRH3
• h3_perturb_type_ : protocols::antibody::AntibodyModelerProtocol
• h3_random_cut_ : protocols::antibody_legacy::CDRH3Modeler
• h3_refine_type_ : protocols::antibody::AntibodyModelerProtocol
• H3_t_name_ : protocols::antibody::Ab_TemplateInfo
• H3_t_pose_ : protocols::antibody::Ab_TemplateInfo
• H3_ter_library_filename_ : protocols::antibody::H3CterInsert
• H_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• H_chain_ : protocols::antibody::AntibodyInfo
• H_mult_ : protocols::frag_picker::scores::TalosSSSimilarity
• H_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• HA_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• HA_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• half_bin_width_root_three_ : protocols::match::Bool3DGrid
• halfdimprods_ : protocols::match::Bool3DGrid
• halfdimsizes_ : protocols::match::Bool3DGrid
• halt_on_error_ : protocols::matdes::SchemePlaceMotifsMover
• hamiltonians_ : protocols::canonical_sampling::HamiltonianExchange
• handedness_score_ : protocols::simple_filters::SheetFilter
• hard_scorefxn_ : protocols::ligand_docking::LigandBaseProtocol
• harmonic_ca_cst_std_dev : protocols::simple_moves::ShakeStructureMover
• has_bulge_ : protocols::fldsgn::topology::StrandPairing
• has_child_ : protocols::canonical_sampling::mc_convergence_checks::HPool_RMSD
• has_constraints : protocols::forge::remodel::LineObject
• has_design_info_ : protocols::forge::remodel::RemodelData
• has_empty_ : protocols::stepwise::sampler::StepWiseSamplerAny
• has_finished_ : protocols::jd2::archive::Batch
• has_key_ : protocols::frag_picker::VallChunk
• has_ligand_ : protocols::forge::remodel::RemodelMover::instruction_flags
• has_path_ : protocols::motifs::Motif
• has_physical_cut : protocols::environment::claims::JumpElement
• has_remark_ : protocols::motifs::Motif
• has_silent_in_ : protocols::jd2::archive::Batch
• has_task_factory_ : protocols::simple_moves::AddConstraintsToCurrentConformationMover
• hash_ : protocols::environment::AutoCutData , protocols::loophash::LoopHashLibrary , protocols::loophash::LoopHashMap , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::MatchOutputTracker , protocols::match::OccupiedSpaceHash
• hash_file_names_ : protocols::ligand_docking::WriteLigandMolFile
• hash_pose1_ : protocols::sic_dock::CBScore , protocols::sic_dock::scores::MotifHashRigidScore
• hash_sizes_ : protocols::loophash::LoopHashLibrary
• hasher : protocols::abinitio::IterativeBase
• hashin_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hashout_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hasInsertion : protocols::forge::remodel::RemodelWorkingSet
• hb_database : protocols::toolbox::pose_metric_calculators::NumberHBondsCalculator
• hb_database_ : protocols::dna::RotamerDNAHBondFilter , protocols::toolbox::pose_metric_calculators::SemiExplicitWaterUnsatisfiedPolarsCalculator
• HB_DHO_AngleList : protocols::sparta::PDB
• hb_eval_tuples_ : protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hb_filter : protocols::flexpep_docking::FlexPepDockingFlags
• HB_HOA_AngleList : protocols::sparta::PDB
• HBDistList : protocols::sparta::PDB
• HBEnergyList : protocols::sparta::PDB
• hbond_acceptor_limit_ : protocols::ligand_docking::HBondAcceptorFilter
• hbond_database_ : protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hbond_donor_limit_ : protocols::ligand_docking::HBondDonorFilter
• hbond_E_fraction : protocols::analysis::InterfaceData
• hbond_energy_threshold_ : protocols::protein_interface_design::movers::DesignMinimizeHbonds
• hbond_options_ : protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hbond_set_ : protocols::ligand_docking::rdf::RDFHbondFunction
• hbondoptions_ : protocols::dna::RotamerDNAHBondFilter
• hbs_post_pos_ : protocols::simple_moves::hbs::HbsPatcher
• hbs_pre_pos_ : protocols::simple_moves::hbs::HbsPatcher
• hcut_ : protocols::hybridization::DDomainParse , protocols::hybridization::HybridizeProtocol , protocols::hybridization::HybridizeSetup
• he : protocols::sic_dock::XfoxmScore
• header : protocols::wum::WorkUnitBase
• header_ : protocols::analysis::PeptideDeriverMarkdownStreamOutputter
• heat_after_cycles_ : protocols::moves::MonteCarlo
• heat_structure_ : protocols::farna::RNA_DeNovoProtocol
• heavy_atom_limit_ : protocols::ligand_docking::HeavyAtomFilter
• heavy_chain : protocols::toolbox::task_operations::RestrictToCDRH3Loop
• hedge_archive_ : protocols::abinitio::IterativeBase
• helical_sigOffAxisR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigOffAxisT : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigT : protocols::rbsegment_relax::RBSegmentRelax
• helices_ : protocols::fldsgn::topology::SS_Info2 , protocols::rbsegment_relax::IdealizeHelicesMover
• helix2hss_ : protocols::fldsgn::topology::HSSTripletSet
• helix_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet , protocols::nonlocal::HelixRotate
• helix_cap_dist_cutoff_ : protocols::features::helixAssembly::HelixBundleFeatures
• helix_cycle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• helix_end_ : protocols::fldsgn::filters::HelixKinkFilter
• helix_id_ : protocols::fldsgn::topology::SS_Info2
• helix_index_ : protocols::helical_bundle::PerturbBundleOptions
• helix_length_ : protocols::helical_bundle::MakeBundleHelix
• helix_pairings_ : protocols::abinitio::TemplateJumpSetup , protocols::fldsgn::topology::HelixPairingSet , protocols::jd2::parser::BluePrint
• helix_size_ : protocols::features::helixAssembly::HelixBundleFeatures
• helix_start_ : protocols::fldsgn::filters::HelixKinkFilter
• helix_start_positions_ : protocols::helix_capper::HelixNCapperMover
• helixjump_pick_list_ : protocols::abinitio::Templates
• HelixMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• help_ : protocols::forge::remodel::RemodelMover::instruction_flags
• hetatm_prot_cst_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol , protocols::hybridization::HybridizeSetup
• hetatm_self_cst_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol , protocols::hybridization::HybridizeSetup
• hfr_ : protocols::antibody_legacy::Antibody
• hfr_pose_ : protocols::antibody::ModelCDRH3
• Hfr_t_name_ : protocols::antibody::Ab_TemplateInfo
• hh : protocols::sic_dock::XfoxmScore
• hh_align_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• hh_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hhpot_ : protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• high : protocols::make_rot_lib::TorsionRange
• high_color_ : protocols::qsar::RenderGridsToKinemage
• high_cst_ : protocols::antibody::AntibodyModelerProtocol , protocols::antibody::H3RefineCCD , protocols::antibody::RefineOneCDRLoop , protocols::antibody_legacy::CDRH3Modeler
• high_entropy_rms_cutoff_ : protocols::optimize_weights::PNatStructureOptEData
• high_move_temp_ : protocols::antibody::H3RefineCCD
• high_res_angstroms_ : protocols::ligand_docking::LigandArea
• high_res_degrees_ : protocols::ligand_docking::LigandArea
• high_res_dock_inner_cycles_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• high_res_dock_outer_cycles_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• high_resolution_step_ : protocols::antibody::SnugDock
• high_temp_ : protocols::toolbox::task_operations::ModifyAnnealer
• higher_d77_pert_mode_ : protocols::ub_e2c::ubi_e2c_modeler
• highest_tmpl_resnum_ : protocols::hybridization::ChunkTrialMover
• highres_filter_ : protocols::docking::DockingProtocol
• highres_reference_energies_ : protocols::docking::DockingEnsemble
• highres_scorefxn_ : protocols::antibody::H3RefineCCD , protocols::antibody_legacy::CDRH3Modeler , protocols::antibody_legacy::LoopRlxMover , protocols::docking::membrane::MPDockingMover , protocols::seeded_abinitio::SegmentHybridizer
• highval_ : protocols::match::downstream::AtomGeometrySecMatchRPE
• hires_score_ : protocols::protein_interface_design::movers::LoopMoverFromCommandLine , protocols::protein_interface_design::movers::LoopRemodel
• hires_scorefxn_ : protocols::farna::RNA_DeNovoProtocol , protocols::protein_interface_design::movers::PlaceOnLoop
• histograms_ : protocols::simple_moves::DOFHistogramRecorder
• history_ : protocols::hybridization::TemplateHistory
• hit_cacher_ : protocols::match::output::SameChiBinComboGrouper , protocols::match::output::SameSequenceGrouper
• hit_data_ : protocols::match::downstream::TargetRotamerCoords
• hit_hashes_ : protocols::match::HitHasher
• hit_score_cutoff_ : protocols::stepwise::modeler::align::StepWiseLegacyClusterer , protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
• hits_ : protocols::match::Matcher
• hits_for_focused_geomcst_and_build_point_begin_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_and_build_point_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hl : protocols::sic_dock::XfoxmScore
• hlevel_ : protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
• HN_S2 : protocols::sparta::PDB
• HOMO_Tab : protocols::sparta::Sparta::SpartaLib
• homoFileName : protocols::sparta::Sparta::SpartaLib
• homologs_ : protocols::loophash::BackboneDB
• host_chain_ : protocols::protein_interface_design::filters::StubScoreFilter , protocols::protein_interface_design::movers::BestHotspotCstMover , protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::protein_interface_design::movers::PlacementMinimizationMover , protocols::protein_interface_design::movers::PlaceOnLoop , protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover , protocols::protein_interface_design::movers::SetAtomTree
• hotspot_distcb_weight_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_filenames_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_filter : protocols::flexpep_docking::FlexPepDockingFlags
• hotspot_filter_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hotspot_length_ : protocols::hotspot_hashing::HotspotStubSet
• hotspot_score_weight_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_stub_set_ : protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover , protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
• hotspotcst_filter_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hpairpot_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hpairset_ : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• hpairset_name_ : protocols::fldsgn::topology::HelixPairingSet
• hs1_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs1_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs2_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs2_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::BetaAlphaBetaMotif
• hs_dist_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_pair_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hs_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hsheet_dist_ : protocols::fldsgn::topology::HSSTriplet
• hsheet_dist_repulsive_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hsheet_elev_angle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• hspot_ : protocols::fldsgn::potentials::SetSecStructEnergies , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• hss3set_ : protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hss_triplets_ : protocols::fldsgn::topology::HSSTripletSet , protocols::jd2::parser::BluePrint
• ht_for_chitip_atoms_ : protocols::match::upstream::UpstreamResTypeGeometry
• hurry_ : protocols::protein_interface_design::movers::LoopRemodel , protocols::protein_interface_design::movers::PlaceStubMover , protocols::symmetric_docking::SymDockProtocol
• hybridize_setup_ : protocols::hybridization::CartesianHybridize , protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeSetupMover
• hydrophobic_ : protocols::simple_filters::InterfaceSasaFilter , protocols::simple_filters::TotalSasaFilter
• hydrophobic_residues_ : protocols::denovo_design::filters::ExposedHydrophobicsFilter