- w -

• w : protocols::simple_filters::Quat
• W2I_1 : protocols::sparta::ANN
• W2I_2 : protocols::sparta::ANN
• W2I_3 : protocols::sparta::ANN
• W2L1_1 : protocols::sparta::ANN
• W2L1_2 : protocols::sparta::ANN
• W2L1_3 : protocols::sparta::ANN
• W2L2_1 : protocols::sparta::ANN
• W2L2_2 : protocols::sparta::ANN
• W2L2_3 : protocols::sparta::ANN
• wait_time_ : protocols::wum2::WorkUnit_Wait
• was_modified_ : protocols::frag_picker::scores::FragmentScoreMap
• was_successful_ : protocols::loop_modeling::LoopMover
• weight : protocols::md::MDscheduleData
• weight_ : protocols::abinitio::PairingStatEntry , protocols::cryst::SetCrystWeightMover , protocols::fldsgn::potentials::SetAACompositionPotential , protocols::fldsgn::SheetConstraintsRCG , protocols::jumping::JumpSelector::JumpWeightDef , protocols::moves::MoverContainer , protocols::pockets::PocketConstraint , protocols::rbsegment_relax::OptimizeThreadingMover , protocols::scoring::methods::pcs2::PcsDataLanthanide , protocols::scoring::methods::pcs2::PcsInputFile , protocols::scoring::methods::pcs::PCS_data_per_lanthanides , protocols::scoring::methods::pcs::PCS_file_data , protocols::scoring::methods::pcsTs1::PCS_data_per_lanthanides_Ts1 , protocols::scoring::methods::pcsTs1::PCS_file_data_Ts1 , protocols::scoring::methods::pcsTs2::PCS_data_per_lanthanides_Ts2 , protocols::scoring::methods::pcsTs2::PCS_file_data_Ts2 , protocols::scoring::methods::pcsTs3::PCS_data_per_lanthanides_Ts3 , protocols::scoring::methods::pcsTs3::PCS_file_data_Ts3 , protocols::scoring::methods::pcsTs4::PCS_data_per_lanthanides_Ts4 , protocols::scoring::methods::pcsTs4::PCS_file_data_Ts4 , protocols::simple_moves::FavorSequenceProfile , protocols::simple_moves::MSDMover , protocols::topology_broker::weights::ConstAbinitioMoverWeight , protocols::topology_broker::weights::LargeFragWeight , protocols::topology_broker::weights::SmallFragWeight , protocols::topology_broker::weights::SmoothFragWeight
• weight_factor_ : protocols::toolbox::IGLigandDesignEdgeUpweighter , protocols::toolbox::ResidueGroupIGEdgeUpweighter
• weight_map_ : protocols::toolbox::pose_metric_calculators::EnergiesData
• weight_min_ : protocols::cryst::SetCrystWeightMover
• weight_scale_ : protocols::cryst::SetCrystWeightMover
• WEIGHT_Tab : protocols::sparta::Sparta::SpartaLib
• weighted_counts_ : protocols::canonical_sampling::SimulatedTempering
• weighted_sampler_ : protocols::canonical_sampling::MetropolisHastingsMover , protocols::hybridization::WeightedFragmentSmoothTrialMover , protocols::hybridization::WeightedFragmentTrialMover
• weighted_total_ : protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
• weightFileName : protocols::sparta::Sparta::SpartaLib
• weights_ : protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD , protocols::canonical_sampling::SimulatedTempering , protocols::filters::IfThenFilter , protocols::frag_picker::CompareByScoreCombination , protocols::frag_picker::DiversifyCrmsdByClustering , protocols::frag_picker::DiversifyCrmsdSelector , protocols::frag_picker::quota::ABEGO_SS_Pool , protocols::frag_picker::quota::SecondaryStructurePool , protocols::frag_picker::scores::FragmentAllAtomCrmsd , protocols::frag_picker::scores::FragmentChunkCrms , protocols::frag_picker::scores::FragmentCrmsd , protocols::frag_picker::scores::FragmentCrmsdResDepth , protocols::frag_picker::scores::FragmentDME , protocols::moves::SimulatedTempering , protocols::sic_dock::CBScore , protocols::sic_dock::JointScore , protocols::stepwise::sampler::StepWiseSamplerAny , protocols::toolbox::DecoySetEvaluation
• weights_to_scan_ : protocols::electron_density::BfactorFittingMover
• wfa_atr_ : protocols::match::output::MatchCollisionFilter
• wfa_rep_ : protocols::match::output::MatchCollisionFilter
• wfa_sol_ : protocols::match::output::MatchCollisionFilter
• which_cst_being_processed_ : protocols::match::output::UpstreamHitCacher
• which_geom_cst_ : protocols::match::TaskOperationMPM
• which_jump_ : protocols::stepwise::sampler::JumpStepWiseSampler
• which_point_for_atom_ : protocols::match::upstream::UpstreamResTypeGeometry
• which_scratch_res_is_cut_ : protocols::coarse_rna::CoarseRNA_LoopCloser
• which_torsions_ : protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer , protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger , protocols::stepwise::sampler::protein::ProteinMainChainStepWiseSampler
• whole_interface_ : protocols::simple_filters::EnergyPerResidueFilter , protocols::simple_filters::ResidueIEFilter
• whole_pose_ : protocols::enzdes::EnzScoreFilter , protocols::simple_filters::ResidueIEFilter
• whole_protein_ : protocols::simple_filters::EnergyPerResidueFilter
• whole_struct_cluster_radius_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• WholeStructureMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• WI_1 : protocols::sparta::ANN
• WI_2 : protocols::sparta::ANN
• WI_3 : protocols::sparta::ANN
• width_ : protocols::frag_picker::scores::FragmentScoreManager , protocols::membrane::visualize::VisualizeMembraneMover , protocols::qsar::scoring_grid::GridManager , protocols::viewer::ConformationViewer
• wiggle_cdr_h3_ : protocols::antibody::H3RefineCCD
• window_ : protocols::cryst::LoadDensityMapMover , protocols::noesy_assign::FoldResonance
• window_acceptance_ratio_ : protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
• WINDOW_SIZE : protocols::ss_prediction::SS_predictor
• window_size_ : protocols::loophash::LoopHashDiversifier
• winning_address_ : protocols::canonical_sampling::mc_convergence_checks::DataBuffer
• winning_ranks_ : protocols::canonical_sampling::mc_convergence_checks::DataBuffer , protocols::canonical_sampling::mc_convergence_checks::TransferBuffer
• winning_tag_ : protocols::canonical_sampling::mc_convergence_checks::DataBuffer
• WL1_1 : protocols::sparta::ANN
• WL1_2 : protocols::sparta::ANN
• WL1_3 : protocols::sparta::ANN
• WL2_1 : protocols::sparta::ANN
• WL2_2 : protocols::sparta::ANN
• WL2_3 : protocols::sparta::ANN
• work_dir_ : protocols::simple_filters::ExternalEvaluator
• work_unit_list_ : protocols::wum::WorkUnitList , protocols::wum::WorkUnitManager
• worker_initialized_ : protocols::boinc::Boinc
• worker_running_ : protocols::boinc::Boinc
• workers_finished_ : protocols::canonical_sampling::mc_convergence_checks::MPIBPool_RMSD
• working_align_pose_ : protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
• working_align_res : protocols::stepwise::modeler::rna::checker::VDW_RepScreeninfo
• working_best_alignment_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_bridge_res_ : protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer , protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger , protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_calc_rms_res_ : protocols::stepwise::modeler::StepWiseMinimizer , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_extra_minimize_res_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
• working_fixed_res_ : protocols::stepwise::modeler::StepWiseMinimizer , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_force_north_sugar_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_force_south_sugar_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_force_syn_chi_res_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_global_sample_res_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_minimize_res_ : protocols::stepwise::modeler::StepWiseModeler
• working_model_ : protocols::forge::remodel::RemodelAccumulator , protocols::forge::remodel::RemodelDesignMover , protocols::forge::remodel::RemodelGlobalFrame , protocols::forge::remodel::RemodelMover
• working_moving_partition_res_ : protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_moving_res_ : protocols::stepwise::modeler::StepWiseMinimizer , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_moving_res_list_ : protocols::stepwise::modeler::packer::StepWisePacker , protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_moving_suite_ : protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_moving_suite_list_ : protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_native_alignment_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_native_pose : protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
• working_native_pose_ : protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_pack_res_ : protocols::stepwise::modeler::packer::StepWiseMasterPacker , protocols::stepwise::modeler::packer::StepWisePacker , protocols::stepwise::modeler::StepWiseMinimizer
• working_pack_res_was_inputted_ : protocols::stepwise::modeler::packer::StepWisePacker
• working_parameters_ : protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup , protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer , protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer , protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSelection , protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetup , protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup , protocols::stepwise::modeler::packer::StepWiseMasterPacker , protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler , protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker , protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer , protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarJustInTimeInstantiator , protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarSampler , protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarSamplerFromStringList , protocols::stepwise::modeler::StepWiseConnectionSampler , protocols::stepwise::modeler::StepWiseModeler
• working_parameters_exist_ : protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
• working_prepack_res_ : protocols::stepwise::modeler::StepWiseModeler
• working_protonated_H1_adenosine_list_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_sequence_ : protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_set_size_ : protocols::boinc::Boinc
• working_set_size_max_val_ : protocols::boinc::Boinc
• working_superimpose_res_ : protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
• working_terminal_res_ : protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
• working_to_sliced_res_map_ : protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters
• worst_ : protocols::frag_picker::LazySortedVector1< T, StrictWeakOrdering >
• worst_allowed_stub_bonus_ : protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover , protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
• worst_combine_score_ : protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
• wrapped_opt_min_ : protocols::optimize_weights::IterativeOptEDriver
• wrapped_phipsi_bins_ : protocols::match::VoxelSetIterator
• wrapped_phipsi_halfbins_ : protocols::match::VoxelSetIterator
• write2pdb_ : protocols::matdes::OligomericAverageDegreeFilter , protocols::matdes::SymUnsatHbondFilter , protocols::protein_interface_design::filters::SequenceRecoveryFilter , protocols::simple_filters::DdGScan , protocols::simple_filters::MutationsFilter , protocols::simple_filters::RotamerBoltzmannWeight , protocols::simple_filters::TaskAwareScoreTypeFilter
• write_ : protocols::matdes::ClashCheckFilter
• write_AA_kind_files_ : protocols::features::strand_assembly::SandwichFeatures
• write_all_info_files_ : protocols::features::strand_assembly::SandwichFeatures
• write_atom_names_ : protocols::noesy_assign::PeakFileFormat
• write_beta_sheet_capping_info_ : protocols::features::strand_assembly::SandwichFeatures
• write_chain_B_resnum_ : protocols::features::strand_assembly::SandwichFeatures
• write_dynamic_rsr_ : protocols::md::MDBase
• write_electrostatic_interactions_of_all_residues_ : protocols::features::strand_assembly::SandwichFeatures
• write_electrostatic_interactions_of_all_residues_in_a_strand_ : protocols::features::strand_assembly::SandwichFeatures
• write_electrostatic_interactions_of_surface_residues_in_a_strand_ : protocols::features::strand_assembly::SandwichFeatures
• write_empty_voxels_ : protocols::match::Bool3DGridKinemageWriter
• write_facets_ : protocols::match::Bool3DGridKinemageWriter
• write_file_ : protocols::match::output::MatchScoreWriter
• write_heading_directions_of_all_AA_in_a_strand_ : protocols::features::strand_assembly::SandwichFeatures
• write_int_area_ : protocols::simple_filters::ShapeComplementarityFilter
• write_loop_AA_distribution_files_ : protocols::features::strand_assembly::SandwichFeatures
• write_matchres_only_ : protocols::match::output::PDBWriter
• write_only_highest_VC_ : protocols::noesy_assign::PeakFileFormat_Base
• write_p_aa_pp_files_ : protocols::features::strand_assembly::SandwichFeatures
• write_phi_psi_of_all_ : protocols::features::strand_assembly::SandwichFeatures
• write_phi_psi_of_E_ : protocols::features::strand_assembly::SandwichFeatures
• write_rama_at_AA_to_files_ : protocols::features::strand_assembly::SandwichFeatures
• write_resfile_ : protocols::features::strand_assembly::SandwichFeatures
• write_resfile_NOT_FWY_on_surface_ : protocols::features::strand_assembly::SandwichFeatures
• write_resfile_to_minimize_too_many_core_heading_FWY_on_core_strands_ : protocols::features::strand_assembly::SandwichFeatures
• write_resfile_to_minimize_too_many_core_heading_FWY_on_edge_strands_ : protocols::features::strand_assembly::SandwichFeatures
• write_resfile_to_minimize_too_much_hydrophobic_surface_ : protocols::features::strand_assembly::SandwichFeatures
• write_resfile_when_seq_rec_is_bad_ : protocols::features::strand_assembly::SandwichFeatures
• write_scorefile_ : protocols::jd2::FileJobOutputter
• write_separate_scorefile_ : protocols::jd2::SilentFileJobOutputter
• write_strand_AA_distribution_files_ : protocols::features::strand_assembly::SandwichFeatures
• write_to_file_ : protocols::stepwise::modeler::rna::checker::RNA_VDW_BinChecker
• write_virtual_atoms_ : protocols::match::output::ResidueKinemageWriter , protocols::match::output::WriteUpstreamHitKinemage
• writer_ : protocols::match::output::MatchProcessor
• wt_ : protocols::canonical_sampling::PatchOperation , protocols::simple_moves::symmetry::SetupNCSMover
• wt_aa_ : protocols::optimize_weights::DDGMutationOptEData
• wt_adp_ : protocols::electron_density::BfactorFittingMover , protocols::electron_density::BfactorMultifunc
• wt_complexes_ : protocols::optimize_weights::DDGBindOptEData
• wt_components_ : protocols::ddg::ddGMover
• wt_dens_ : protocols::electron_density::BfactorFittingMover , protocols::electron_density::BfactorMultifunc
• wt_residue_ : protocols::pmut_scan::MutationData
• wt_unbound_components_ : protocols::ddg::ddGMover
• wt_unbounds_ : protocols::optimize_weights::DDGBindOptEData
• wt_unfolded_energies_emap_ : protocols::optimize_weights::NestedEnergyTermDDGMutationOptEData
• wtD_ : protocols::simple_moves::symmetry::SetupNCSMover
• wts_ : protocols::optimize_weights::DDGMutationOptEData
• wu_desc_buf : protocols::boinc::BoincSharedMemory
• wu_desc_exists : protocols::boinc::BoincSharedMemory
• wu_type_ : protocols::wum::WorkUnitBase::WU_Header
• wum_ : protocols::wum::WorkUnitQueue_Swapped
• wus_ : protocols::wum::WorkUnitQueue