- a -

• ABS : protocols::simple_filters
• accept : protocols::hotspot_hashing
• accept_reject : protocols::moves
• ADD : protocols::stepwise::monte_carlo
• add_daemon : protocols::pack_daemon
• ADD_NEW : protocols::enzdes
• ADD_PREGENERATED : protocols::enzdes
• ADDED_STRUCTURE_AS_INTENDED : protocols::optimize_weights
• ADDED_STRUCTURE_OPPOSITE_AS_INTENDED : protocols::optimize_weights
• AHO_Scheme : protocols::antibody
• all_chunks : protocols::hybridization
• ALL_STAGES : protocols::abinitio
• all_stats : protocols::moves
• ALWAYS_CLEAR : protocols::forge::components::VLB_VallMemoryUsage
• ANCHOR_SUGAR : protocols::stepwise::screener
• AND : protocols::filters , protocols::toolbox::task_operations
• ANDNOT : protocols::filters , protocols::toolbox::task_operations
• angleA : protocols::jumping
• angleB : protocols::jumping
• AntibodyNumberingSchemeEnum_start : protocols::antibody
• AntibodyNumberingSchemeEnum_total : protocols::antibody
• AntibodyRegionEnum_start : protocols::antibody
• AntibodyRegionEnum_total : protocols::antibody
• antigen_region : protocols::antibody
• ANY : protocols::stepwise::sampler
• append : protocols::cyclic_peptide
• Aroop : protocols::antibody
• atom_pair_distance : protocols::generalized_kinematic_closure::filter
• ATOM_TREE_FILE : protocols::jd2::JobInputterInputSource
• ATR_REP : protocols::stepwise::screener