Here is a list of all namespace members with links to the namespace documentation for each member:

- n -

• N : core::chemical::element , protocols::forge::build::SegmentInsertConnectionScheme , protocols::sic_dock::scores
• n2c : protocols::rigid
• N5() : protocols::sic_dock::scores
• N6() : protocols::sic_dock::scores
• N_ACETYLATION : core::chemical
• n_ali8_ : protocols::hybridization
• N_ATOM_PROPERTIES : core::chemical
• n_cacheable_types : core::conformation::residue_datacache
• n_chain_directions : protocols::loops::loop_closure::ccd
• n_ci_2b_score_types : core::scoring
• n_correctly_aligned_positions() : core::sequence
• n_daemon_set_messages : protocols::pack_daemon
• n_DOF_Type() : core::id
• n_energy_method_types : core::scoring::methods
• n_energy_methods : core::scoring::methods
• n_external_transforms : protocols::toolbox::match_enzdes_util
• n_fold_types : protocols::fldsgn::topology
• n_inner_iterations() : core::pack
• N_LINK_TYPES : core::chemical::carbohydrates
• n_long_range_types : core::scoring::methods
• n_min_pair_data : core::scoring
• n_min_single_data : core::scoring
• n_optE_data_types : protocols::optimize_weights
• N_p_sp2 : core::chemical::orbitals
• N_pi_sp2 : core::chemical::orbitals
• n_ppo_torsion_bins : core::conformation
• n_probe_radii : protocols::match
• N_PROBES : core::scoring::packstat
• N_PROPERTIES : core::chemical
• N_RECORD_TYPES : core::io::pdb
• n_score_types : core::scoring
• n_secondary_structure_types : protocols::loops::loop_closure::ccd
• n_shortranged_2b_score_types : core::scoring
• n_ss_types : protocols::comparative_modeling::features
• n_torsion_bins : protocols::comparative_modeling::features
• N_VARIANTS : core::chemical
• Na : core::chemical::element
• NA : protocols::antibody::clusters
• na_ade : core::chemical
• NA_ChemicalShiftEnergyCreator_registrator : core::init
• na_cyt : core::chemical
• NA_GREEK_DISTANCE : core::chemical
• na_gua : core::chemical
• na_rad : core::chemical
• na_rcy : core::chemical
• na_rgu : core::chemical
• na_thy : core::chemical
• na_ura : core::chemical
• naccess : core::scoring::sasa
• NAIVE : core::conformation
• name2aa() : core::chemical
• name2element() : core::chemical::element
• name2type() : protocols::frag_picker
• name3_from_oneletter() : protocols::motifs
• name_from_aa() : core::chemical
• name_from_elements() : core::chemical::element
• name_from_score_type() : core::scoring
• NameBimap : core::io::pose_from_sfr
• named_atom_id_to_atom_id() : core::conformation , core::pose
• named_stub_id_to_stub_id() : core::conformation , core::pose
• NamedAngleConstraintCOP : core::scoring::constraints
• NamedAngleConstraintCreator_registrator : core::init
• NamedAngleConstraintOP : core::scoring::constraints
• NamedAtomID_Mask : core::id
• NamedAtomPairConstraintCOP : core::scoring::constraints
• NamedAtomPairConstraintOP : core::scoring::constraints
• NamedAtoms : core::scoring::constraints
• NamedDihedralConstraintCOP : core::scoring::constraints
• NamedDihedralConstraintOP : core::scoring::constraints
• NamedMoverAP : protocols::denovo_design::components
• NamedMoverCAP : protocols::denovo_design::components
• NamedMoverCOP : protocols::denovo_design::components
• NamedMoverOP : protocols::denovo_design::components
• NamedNodeSet : protocols::denovo_design::components
• NamedSolution : protocols::denovo_design::components
• NamePosMap : core::pack::rotamers
• NAMESPACE_CLOSING : update_ResidueType_enum_files
• NAMESPACE_OPENING : update_ResidueType_enum_files
• NameVDInserted : core::chemical
• NameVDMap : core::chemical
• NameVDPair : core::chemical
• NAND : protocols::filters , protocols::toolbox::task_operations
• natbias_hh : core::scoring
• natbias_hs : core::scoring
• natbias_ss : core::scoring
• natbias_stwist : core::scoring
• NatbiasHelicesSheetPotentialOP : protocols::fldsgn::potentials::sspot
• NatbiasHelixPairPotentialOP : protocols::fldsgn::potentials::sspot
• NatbiasStrandPairPotentialOP : protocols::fldsgn::potentials::sspot
• native_CA_gdtmm() : core::scoring
• native_CA_rmsd() : core::scoring
• native_loop_core_CA_rmsd() : protocols::loops
• NativeAntibodySeqCOP : protocols::antibody::design
• NativeAntibodySeqOP : protocols::antibody::design
• NativeRotamersMap : protocols::sewing
• natom_aligned() : protocols::hybridization
• Nb : core::chemical::element
• nbr : protocols::sic_dock::scores
• nbr1() : protocols::sic_dock::scores
• nbr2() : protocols::sic_dock::scores
• nbr_atom_rmsd() : core::scoring
• nbytes : core::scoring::packstat::old
• NCAARotamerLibrarySpecificationCOP : core::chemical::rotamers
• NCAARotamerLibrarySpecificationCreator_registrator : core::init
• NCAARotamerLibrarySpecificationOP : core::chemical::rotamers
• NCaCaC_Dihedral_FuncAP : core::scoring::disulfides
• NCaCaC_Dihedral_FuncCAP : core::scoring::disulfides
• NCaCaC_Dihedral_FuncCOP : core::scoring::disulfides
• NCaCaC_Dihedral_FuncOP : core::scoring::disulfides
• ncbb_design_main_loop() : protocols::ncbb
• NcbbDockDesignProtocolCOP : protocols::ncbb
• NcbbDockDesignProtocolCreatorCOP : protocols::ncbb
• NcbbDockDesignProtocolCreatorOP : protocols::ncbb
• NcbbDockDesignProtocolOP : protocols::ncbb
• NcontactsFilterCOP : protocols::fldsgn::filters
• NcontactsFilterOP : protocols::fldsgn::filters
• nCPCrossoverBehaviors : core::scoring::etable::count_pair
• nCPResidueConnectionTypes : core::scoring::etable::count_pair
• NCSResMappingCOP : protocols::simple_moves::symmetry
• NCSResMappingOP : protocols::simple_moves::symmetry
• Nd : core::chemical::element
• ndft() : core::scoring::fiber_diffraction
• ndft_1d() : core::scoring::fiber_diffraction
• Ne : core::chemical::element
• NE2_CONNECT : core::chemical
• nearest_atom_for_constraint() : protocols::protein_interface_design::movers
• NearNativeLoopCloserCOP : protocols::pose_length_moves
• NearNativeLoopCloserOP : protocols::pose_length_moves
• neg_space_element_allocation_error_message() : core::graph
• NEGATIVE_CHARGE : core::chemical
• neigh_count : core::scoring
• neigh_vect : core::scoring
• neigh_vect_raw : core::scoring
• neighbor_count() : protocols::sic_dock
• neighbor_type_filter_tracer() : protocols::simple_filters
• NeighborDependentTabooSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• NeighborDependentTabooSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• NeighborDependentTorsionSamplingKinematicPerturberCOP : protocols::loops::loop_closure::kinematic_closure
• NeighborDependentTorsionSamplingKinematicPerturberOP : protocols::loops::loop_closure::kinematic_closure
• NEIGHBORHOOD_CALC() : protocols::anchored_design
• NeighborhoodByDistanceCalculatorCOP : protocols::toolbox::pose_metric_calculators
• NeighborhoodByDistanceCalculatorOP : protocols::toolbox::pose_metric_calculators
• NeighborhoodResidueSelectorCOP : core::select::residue_selector
• NeighborhoodResidueSelectorOP : core::select::residue_selector
• NeighborListCOP : core::scoring
• NeighborListDataCOP : core::scoring::methods
• NeighborListDataOP : core::scoring::methods
• NeighborListOP : core::scoring
• NeighborsByDistanceCalculatorCOP : protocols::toolbox::pose_metric_calculators
• NeighborsByDistanceCalculatorOP : protocols::toolbox::pose_metric_calculators
• NEITHER : core::chemical::rings
• NestedEnergyTermDDGMutationOptEDataOP : protocols::optimize_weights
• NestedEnergyTermPNatAAOptEPositionDataOP : protocols::optimize_weights
• Neutral : protocols::antibody
• NEW_JOB_ID : protocols::jd2
• NEW_JOB_ID_TAG : protocols::jd2
• NGB_FUN_PTR : protocols::neighbor
• Ni : core::chemical::element
• NIT : protocols::match
• nma_tr() : protocols::normalmode
• nmer_pssm : core::scoring
• nmer_ref : core::scoring
• nmer_svm : core::scoring
• NMerPSSMEnergyCOP : core::scoring::methods
• NMerPSSMEnergyCreator_registrator : core::init
• NMerPSSMEnergyOP : core::scoring::methods
• NMerRefEnergyCOP : core::scoring::methods
• NMerRefEnergyCreator_registrator : core::init
• NMerRefEnergyOP : core::scoring::methods
• NMerSVMEnergyCOP : core::scoring::methods
• NMerSVMEnergyCreator_registrator : core::init
• NMerSVMEnergyOP : core::scoring::methods
• No : core::chemical::element
• NO_ATOM_PROPERTY : core::chemical
• NO_ATTACHMENT : protocols::stepwise::monte_carlo::mover
• NO_CHI : core::chemical::rna
• NO_DERIVATIVES_FOR_ATOM : core::scoring::disulfides
• no_effect : protocols::generalized_kinematic_closure::perturber
• NO_EXTRA_CHI_SAMPLES : core::pack::task
• no_filter : protocols::generalized_kinematic_closure::filter
• NO_JUMP : protocols::rigid
• NO_LIGAND : protocols::motifs
• no_min : protocols::antibody::design
• NO_MOVE : protocols::stepwise::monte_carlo::mover
• NO_OP : protocols::stepwise::sampler
• NO_OVERLAP : core::scoring::motif
• NO_POSITION : core::environment
• NO_PROPERTY : core::chemical
• NO_PUCKER : core::chemical::rna
• NO_REACTIVITY : core::scoring::rna::data
• NO_ROTAMER_TYPE : protocols::stepwise::sampler
• no_samples : protocols::match::upstream
• no_selector : protocols::generalized_kinematic_closure::selector
• no_stats : protocols::moves
• NO_STRANDS : protocols::fldsgn::topology
• NO_SYMMETRIZATION_REQUEST : core::pack::task
• NO_TYPE : core::pose::full_model_info
• NO_VARIANT : core::chemical
• NoBondIsometry : core::chemical
• NodeConstraintAssemblyMoverCOP : protocols::sewing
• NodeConstraintAssemblyMoverOP : protocols::sewing
• NodeCOP : protocols::toolbox
• NodeOP : protocols::toolbox
• NodeSet : protocols::denovo_design::components
• noe_stage() : protocols::abinitio
• NoesyModuleAP : protocols::noesy_assign
• NoesyModuleCAP : protocols::noesy_assign
• NoesyModuleCOP : protocols::noesy_assign
• NoesyModuleOP : protocols::noesy_assign
• nolp : core::scoring::packstat::old
• non_base_atoms : core::chemical::rna
• non_main_chain_sugar_atoms : core::chemical::rna
• non_peptide_heavy_atom_RMSD() : core::scoring
• non_residue_type_constraint_tracer() : core::scoring::constraints
• nonadduct_variants_match() : core::chemical
• NonaromaticBond : core::chemical
• noncanonical_atom_count() : core::pose
• noncanonical_chi_count() : core::pose
• noncanonical_residue_count() : core::pose
• nonconst_full_model_info() : core::pose::full_model_info
• nonconst_Membrane_FAEmbed_from_pose() : core::scoring
• nonconst_MembraneEmbed_from_pose() : core::scoring
• nonconst_MembraneTopology_from_pose() : core::scoring
• nonconst_rna_scoring_info_from_pose() : core::scoring::rna
• nonconst_vdw_cached_rep_screen_info_from_pose() : protocols::stepwise::modeler::rna::checker
• NonContinuousFrameCOP : core::fragment
• NonContinuousFrameOP : core::fragment
• none : core::scoring
• NONE : protocols::antibody , protocols::jd2::JobInputterInputSource , protocols::stepwise::modeler::rna::phosphate , protocols::stepwise::screener
• NonlocalFrags_main() : protocols::frag_picker::nonlocal
• NonlocalFragsCOP : protocols::frag_picker::nonlocal
• NonlocalFragsOP : protocols::frag_picker::nonlocal
• NonlocalPairCOP : protocols::frag_picker::nonlocal
• NonlocalPairOP : protocols::frag_picker::nonlocal
• nonmatching_residues() : core::io::external
• NONOSE : core::chemical
• NonPlaidFingerprintCOP : protocols::pockets
• NonPlaidFingerprintOP : protocols::pockets
• NonResidueTypeConstraintCOP : core::scoring::constraints
• NonResidueTypeConstraintOP : core::scoring::constraints
• nonrotameric_chi_sample_wi_nrchi_bin : protocols::match::upstream
• nonrotameric_chi_sample_wi_nrchi_bin_to_lower_boundary : protocols::match::upstream
• nonzero_hbond_weight() : core::scoring::hbonds
• NoOpStepWiseSamplerCOP : protocols::stepwise::sampler
• NoOpStepWiseSamplerOP : protocols::stepwise::sampler
• NOPARENT : core::conformation::symmetry
• NOR : protocols::filters , protocols::toolbox::task_operations
• NoRepackDisulfidesAP : core::pack::task::operation
• NoRepackDisulfidesCAP : core::pack::task::operation
• NoRepackDisulfidesCOP : core::pack::task::operation
• NoRepackDisulfidesCreator_registrator : core::init
• NoRepackDisulfidesOP : core::pack::task::operation
• NoResFilterCreator_registrator : core::init
• nori : core::scoring::packstat::old
• normal : core::conformation::membrane
• Normal : protocols::nonlocal
• NORMALIZED_SUM : protocols::simple_filters
• normalizing_area() : core::scoring
• NormalModeMinimizerCOP : protocols::normalmode
• NormalModeMinimizerOP : protocols::normalmode
• NormalModeRelaxMoverCOP : protocols::normalmode
• NormalModeRelaxMoverOP : protocols::normalmode
• NORTH : core::chemical::rna
• North : protocols::antibody
• NOSETTING : protocols::cryst
• NOT : protocols::filters , protocols::toolbox::task_operations
• not_already_connected() : protocols::dna
• NOT_SET : protocols::environment
• not_universal_main() : protocols::jobdist
• NotConjugableBond : core::chemical
• note_fwd_element_extensions() : protocols::denovo_design::connection
• note_rev_element_extensions() : protocols::denovo_design::connection
• NotResidueSelectorCOP : core::select::residue_selector
• NotResidueSelectorOP : core::select::residue_selector
• Np : core::chemical::element
• NPDPropCalculatorCOP : protocols::pack_daemon
• NPDPropCalculatorCreatorCOP : protocols::pack_daemon
• NPDPropCalculatorCreatorOP : protocols::pack_daemon
• NPDPropCalculatorOP : protocols::pack_daemon
• nphi : core::scoring::packstat::old
• NRbisafe() : core::scoring::fiber_diffraction
• nres_protein() : core::pose
• NTERM_CONNECT : core::chemical
• ntheta : core::scoring::packstat::old
• NtoCConstraintGeneratorOP : protocols::forge::constraints
• NU : core::id
• NU0 : core::scoring::dna
• NU1 : core::chemical::rna , core::scoring::dna
• NU2 : core::chemical::rna , core::scoring::dna
• NU3 : core::scoring::dna
• NU4 : core::scoring::dna
• NU_ATOM : core::chemical
• NullMoverCOP : protocols::moves
• NullMoverOP : protocols::moves
• num_aa_types : core::chemical
• num_atoms() : core::pose
• Num_BBdisplayState : protocols::viewer::graphics_states_param
• num_bump_filter_fails : protocols::kinematic_closure
• num_bytes : core::scoring , core::scoring::sasa
• num_cacheable_data_types : core::conformation::RotamerSetCacheableDataType , core::scoring::EnergiesCacheableDataType
• num_canonical_aas : core::chemical
• num_cdr_loops : protocols::antibody
• num_chi_angles() : core::pose
• Num_ColorModes : protocols::viewer::graphics_states_param
• num_contact_types : protocols::frag_picker
• num_context_graph_types : core::scoring
• num_cstType : protocols::jumping
• num_dofType : protocols::jumping
• NUM_EDGES() : core::chemical::rna
• num_hbond_acceptors() : core::pose
• num_hbond_donors() : core::pose
• num_heavy_atoms() : core::pose
• num_orbital_types : core::chemical::orbitals
• num_orientations : core::scoring , core::scoring::sasa
• num_overlaps : core::scoring , core::scoring::sasa
• num_phi : core::scoring , core::scoring::sasa
• num_rama_filter_fails : protocols::kinematic_closure
• NUM_RM_TYPES : core::scoring::motif
• NUM_RNA_CHI_TORSIONS() : core::chemical::rna
• NUM_RNA_MAINCHAIN_TORSIONS() : core::chemical::rna
• NUM_RNA_TORSIONS() : core::chemical::rna
• NUM_RPM_TYPES : core::scoring::motif
• Num_SCdisplayState : protocols::viewer::graphics_states_param
• Num_ShowHState : protocols::viewer::graphics_states_param
• num_theta : core::scoring , core::scoring::sasa
• Num_TrajectoryState : protocols::viewer::graphics_states_param
• number_of_configuration_keywords : protocols::loops
• number_of_loop_refine_inner_cycle_names : protocols::loops::loop_mover::refine
• number_of_ramachandran_hashes : protocols::features
• number_of_residue_identifiers : protocols::loops
• numbers : core::io::rna
• NumDerivCheckDataCOP : core::optimization
• NumDerivCheckDataOP : core::optimization
• numerical_derivative_check() : core::optimization , core::optimization::symmetry
• NumericalDerivCheckResultCOP : core::optimization
• NumericalDerivCheckResultOP : core::optimization
• NUMMD : core::io::pdb
• NumNeighborsSelectorCOP : core::select::residue_selector
• NumNeighborsSelectorOP : core::select::residue_selector
• NVlookupCOP : core::scoring::nv
• NVlookupOP : core::scoring::nv
• NVscoreCOP : core::scoring::nv
• NVscoreCreator_registrator : core::init
• NVscoreOP : core::scoring::nv
• NWAlignerCOP : core::sequence
• NWAlignerOP : core::sequence