cluster.cc File Reference

#include <protocols/simple_moves/ScoreMover.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/cluster/cluster.hh>
#include <protocols/loops/Loops.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <basic/options/option.hh>
#include <devel/init.hh>
#include <iostream>
#include <string>
#include <deque>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>

Functions
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::cluster::cluster, utility::io::oc::cout, basic::options::OptionKeys::cluster::exclude_res, basic::options::OptionKeys::cluster::export_only_low, basic::options::OptionKeys::in::file::file, in::file::fullatom(), pyrosetta::get_score_function, devel::init(), app.surface_docking.surface_docking::input, basic::options::OptionKeys::cluster::input_score_filter, basic::options::OptionKeys::frags::j, basic::options::OptionKeys::cluster::limit_cluster_size, basic::options::OptionKeys::cluster::limit_cluster_size_percent, basic::options::OptionKeys::cluster::limit_clusters, basic::options::OptionKeys::cluster::limit_dist_matrix, basic::options::OptionKeys::cluster::limit_total_structures, basic::options::OptionKeys::cluster::loops, basic::options::OptionKeys::cluster::make_ensemble_cst, basic::options::OptionKeys::cluster::max_total_cluster, utility::excn::EXCN_Base::msg(), out::nooutput(), option, options, out::output(), basic::options::OptionKeys::cluster::output_score_filter, basic::options::OptionKeys::cluster::population_weight, app.surface_docking.surface_docking::pose, out::prefix(), basic::options::OptionKeys::cluster::radius, basic::options::OptionKeys::cluster::random_limit_cluster_size_percent, register_options(), basic::options::OptionKeys::cluster::remove_highest_energy_member, basic::options::OptionKeys::cluster::remove_singletons, basic::options::OptionKeys::frags::scoring::scoring, test.T220_AtomAtomPairEnergies::sfxn, basic::options::OptionKeys::out::file::silent, amino_acids::size, basic::options::OptionKeys::cluster::sort_groups_by_energy, basic::options::OptionKeys::symmetry::symmetric_rmsd, basic::options::OptionKeys::cluster::thinout_factor, app.surface_docking.surface_docking::time_start, and basic::options::OptionKeys::inout::dbms::user.