  | 
  
    Rosetta
    3.7
    
   | 
 
 
 
  
  
  
  
 
 
- e -
- e1()
: numeric::expression_parser::BinaryExpression
 
- e2()
: numeric::expression_parser::BinaryExpression
 
- editProt()
: app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
 
- eigenvalues()
: numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
 
- eigenvectors()
: numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
 
- element_list()
: utility::tag::XMLSchemaSimpleSubelementList
 
- element_name()
: utility::tag::XMLSchemaAttribute
, utility::tag::XMLSchemaComplexType
, utility::tag::XMLSchemaComplexTypeGenerator
, utility::tag::XMLSchemaComplexTypeGeneratorImpl
, utility::tag::XMLSchemaElement
, utility::tag::XMLSchemaModelGroup
, utility::tag::XMLSchemaRestriction
, utility::tag::XMLSchemaTopLevelElement
 
- element_type_def()
: utility::tag::XMLSchemaElement
 
- else_expression()
: numeric::expression_parser::ITEExpression
 
- emit()
: yaml.emitter.Emitter
 
- Emitter()
: basic::Emitter
 
- empty()
: numeric::expression_parser::TokenSet
, ObjexxFCL::CArray< typename >
, ObjexxFCL::CArrayP< typename >
, ObjexxFCL::Chunk< T >
, ObjexxFCL::ChunkVector< typename >
, ObjexxFCL::Cstring
, ObjexxFCL::Fstring
, ObjexxFCL::internal::ObserverGraph
, utility::BitSet< B >
, utility::BitVector< B >
, utility::file::FileName
, utility::file::PathName
, utility::keys::ClassKeyMap< K, T, C >
, utility::keys::ClassKeyVector< K, T, C >
, utility::keys::KeyLookup< K >
, utility::keys::KeyVector< K, T >
, utility::keys::SmallKeyMap< K, T >
, utility::keys::SmallKeyVector< K, T >
, utility::signals::Link
 
- enable()
: app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
 
- enable_load()
: app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
 
- enable_MPI_reroute()
: utility::io::ozstream
 
- enable_rama2b()
: app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
 
- end()
: basic::datacache::ConstDataMap
, basic::datacache::DataMap
, basic::datacache::WriteableCacheableMap
, basic::Emitter
, numeric::geometry::hashing::xyzStripeHash
, numeric::kdtree::KDPointList
, numeric::MathMatrix< T >
, numeric::MathVector< T >
, numeric::MultiDimensionalHistogram
, ObjexxFCL::CArray< typename >
, ObjexxFCL::CArrayP< typename >
, utility::BitSet< B >
, utility::BitVector< B >
, utility::fixedsizearray0< T, S >
, utility::fixedsizearray1< T, S >
, utility::in_place_list< T >
, utility::keys::ClassKeyMap< K, T, C >
, utility::keys::ClassKeyVector< K, T, C >
, utility::keys::KeyLookup< K >
, utility::keys::KeyVector< K, T >
, utility::keys::lookup::end< K >
, utility::keys::SmallKeyMap< K, T >
, utility::keys::SmallKeyVector< K, T >
, utility::OrderedTuple< T >
 
- end_array()
: utility::json_spirit::Semantic_actions< Value_type, Iter_type >
 
- end_compound()
: utility::json_spirit::Semantic_actions< Value_type, Iter_type >
 
- end_list()
: basic::Emitter
 
- end_map()
: basic::Emitter
 
- end_obj()
: utility::json_spirit::Semantic_actions< Value_type, Iter_type >
 
- end_of_queue()
: utility::recent_history_queue
 
- end_raw()
: basic::Emitter
, basic::JsonEmitter
, basic::YamlEmitter
 
- endpoints()
: numeric::IntervalSet< typename >
 
- energy_comparison()
: supercharge
 
- entry_distance()
: numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
, numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
 
- entry_radius()
: numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
, numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
 
- EnumBinder()
: binder::EnumBinder
 
- eof()
: utility::io::icstream
, utility::io::irstream
, utility::io::izstream
, utility::io::ocstream
, utility::io::orstream
, utility::io::ozstream
 
- equal()
: ObjexxFCL::Fstring
, utility::file::FileName
, utility::file::PathName
 
- equal_dimension()
: ObjexxFCL::FArray1< typename >
, ObjexxFCL::FArray2< typename >
, ObjexxFCL::FArray3< typename >
, ObjexxFCL::FArray4< typename >
, ObjexxFCL::FArray5< typename >
, ObjexxFCL::FArray6< typename >
 
- equal_length()
: numeric::xyzTriple< typename >
, numeric::xyzVector< typename >
 
- equals()
: utility::keys::AutoKey< O, S, C >
, utility::keys::Key
, utility::keys::UserKey< O, S, C >
 
- equals_string()
: utility::options::BooleanOption
, utility::options::Option
, utility::options::ScalarOption_T_< K, T >
, utility::options::VectorOption_T_< K, T >
 
- EqualsExpression()
: numeric::expression_parser::EqualsExpression
 
- erase()
: basic::datacache::WriteableCacheableMap
, utility::file::FileName
, utility::file::PathName
, utility::keys::ClassKeyVector< K, T, C >
, utility::keys::KeyLookup< K >
, utility::keys::KeyVector< K, T >
, utility::keys::SmallKeyVector< K, T >
 
- error_code()
: fmt::SystemError
 
- error_messages()
: utility::tag::XMLValidationOutput
 
- Error_position()
: utility::json_spirit::Error_position
 
- ErrorCode()
: fmt::ErrorCode
 
- errors()
: utility::tag::XMLErrorHandler
, utility::tag::XMLValidationOutput
 
- escape_string()
: basic::Emitter
 
- euler()
: basic::sampling::orientations::Quaternion
, basic::sampling::orientations::QuaternionGrid
 
- euler_angles_deg()
: numeric::HomogeneousTransform< T >
, numeric::xyzTransform< typename >
 
- euler_angles_rad()
: numeric::HomogeneousTransform< T >
, numeric::xyzTransform< typename >
 
- euler_offsets()
: numeric::geometry::hashing::SixDCoordinateBinner
 
- EulerAngles()
: numeric::EulerAngles< typename >
 
- eval()
: numeric::Polynomial_1d
 
- eval_intrares_energy()
: test.T870_SubClassing_EnergyMethods2.CD2B_Method
, test.T870_SubClassing_EnergyMethods2.CI2B_Method
, test.Workshop9_my_shapes.CI2BScoreMethod
 
- ex()
: numeric::expression_parser::UnaryExpression
 
- examine_edge()
: utility::graph::null_bfs_prune_visitor
, utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >
 
- examine_vertex()
: utility::graph::null_bfs_prune_visitor
 
- EXCN_BadInput()
: utility::excn::EXCN_BadInput
 
- EXCN_Base()
: utility::excn::EXCN_Base
 
- EXCN_FileNotFound()
: utility::excn::EXCN_FileNotFound
 
- EXCN_IO()
: utility::excn::EXCN_IO
 
- EXCN_JD2Failure()
: utility::excn::EXCN_JD2Failure
 
- EXCN_KeyError()
: utility::excn::EXCN_KeyError
 
- EXCN_Msg_Exception()
: utility::excn::EXCN_Msg_Exception
 
- EXCN_NullPointer()
: utility::excn::EXCN_NullPointer
 
- EXCN_RangeError()
: utility::excn::EXCN_RangeError
 
- EXCN_RosettaScriptsOption()
: utility::excn::EXCN_RosettaScriptsOption
 
- EXCN_Stop_BFS()
: utility::graph::EXCN_Stop_BFS
 
- EXCN_utility_exit()
: utility::EXCN_utility_exit
 
- execute()
: app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IterableIPShell
, BuildBindings.SubCall
, PerformanceBenchmark
 
- executeAllBenchmarks()
: PerformanceBenchmark
 
- executeOneBenchmark()
: PerformanceBenchmark
 
- ExemplarMover()
: ExemplarMover
 
- exit_callback()
: pyrosetta.PythonPyExitCallback
, src.PythonPyExitCallback
, src.utility.PythonPyExitCallback
, utility::py::PyExitCallback
 
- exp()
: ObjexxFCL::Dimension
 
- exp_clone()
: ObjexxFCL::Dimension
 
- exp_p()
: ObjexxFCL::Dimension
 
- expand()
: numeric::geometry::BoundingBox< typename >
, utility::BitVector< B >
 
- expand_tight()
: utility::BitVector< B >
 
- expect_alias()
: yaml.emitter.Emitter
 
- expect_block_mapping()
: yaml.emitter.Emitter
 
- expect_block_mapping_key()
: yaml.emitter.Emitter
 
- expect_block_mapping_simple_value()
: yaml.emitter.Emitter
 
- expect_block_mapping_value()
: yaml.emitter.Emitter
 
- expect_block_sequence()
: yaml.emitter.Emitter
 
- expect_block_sequence_item()
: yaml.emitter.Emitter
 
- expect_document_end()
: yaml.emitter.Emitter
 
- expect_document_root()
: yaml.emitter.Emitter
 
- expect_document_start()
: yaml.emitter.Emitter
 
- expect_first_block_mapping_key()
: yaml.emitter.Emitter
 
- expect_first_block_sequence_item()
: yaml.emitter.Emitter
 
- expect_first_document_start()
: yaml.emitter.Emitter
 
- expect_first_flow_mapping_key()
: yaml.emitter.Emitter
 
- expect_first_flow_sequence_item()
: yaml.emitter.Emitter
 
- expect_flow_mapping()
: yaml.emitter.Emitter
 
- expect_flow_mapping_key()
: yaml.emitter.Emitter
 
- expect_flow_mapping_simple_value()
: yaml.emitter.Emitter
 
- expect_flow_mapping_value()
: yaml.emitter.Emitter
 
- expect_flow_sequence()
: yaml.emitter.Emitter
 
- expect_flow_sequence_item()
: yaml.emitter.Emitter
 
- expect_node()
: yaml.emitter.Emitter
 
- expect_nothing()
: yaml.emitter.Emitter
 
- expect_scalar()
: yaml.emitter.Emitter
 
- expect_stream_start()
: yaml.emitter.Emitter
 
- ExposedStrandMover()
: ExposedStrandMover
 
- ExpressionCreator()
: numeric::expression_parser::ExpressionCreator
 
- ext()
: utility::file::FileName
 
- extend()
: app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
, numeric::kdtree::HyperRectangle
 
- extend_bounds()
: numeric::kdtree::KDTree
 
- extend_options()
: app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
 
- extension()
: utility::file::FileName
 
- extract()
: utility::in_place_list< T >
 
- extract_eigenvalues()
: numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
 
- extract_eigenvectors()
: numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
 
- extract_real_indices()
: numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
 
- ExtractATD()
: ExtractATD