 |
Rosetta
3.7
|
- c -
- c_str()
: fmt::BasicCStringRef< Char >
, fmt::BasicWriter< Char >
, fmt::FormatInt
, ObjexxFCL::Fstring
- Cache()
: Cache
- CacheableString()
: basic::datacache::CacheableString
- CacheableStringFloatMap()
: basic::datacache::CacheableStringFloatMap
- CacheableStringMap()
: basic::datacache::CacheableStringMap
- caclulateDihedral()
: app.pyrosetta_toolkit.modules.Structure.Residue
- calc_bb_E()
: HDdesignMover
- calc_centered_coordinate_rmsd()
: numeric::alignment::QCP_Kernel< Real >
- calc_coordinate_rmsd()
: numeric::alignment::QCP_Kernel< Real >
- calc_rmsd_Theobald_method()
: numeric::alignment::QCP_Kernel< Real >
- calculate()
: HPatchByChainNPDCalculator
, HPatchNPDCalculator
, NBuriedUnsatsCalcultor
- calculate_auc()
: numeric::RocCurve
- calculate_results()
: app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
- calculate_rho()
: Solver
, Solver_NU
- calculate_tracer_level()
: basic::Tracer
- calculate_tracer_visibilities()
: basic::Tracer
- calculate_visibility()
: basic::Tracer
, basic::Tracer::TracerProxy
- Calculator()
: numeric::Calculator
- calculator_name()
: HPatchByChainNPDCalculatorCreator
, HPatchNPDCalculatorCreator
, NBuriedUnsatsCalcultorCreator
- CalculatorParser()
: numeric::CalculatorParser
- call()
: BuildBindings.SubCall
- can_hold_another()
: utility::options::Option
, utility::options::ScalarOption_T_< K, T >
, utility::options::VectorOption_T_< K, T >
- can_wrap()
: tools.CppParser.CppVariable
- can_wrap_type()
: tools.CppParser.CppVariable
- Canonicalize()
: basic::sampling::orientations::Quaternion
- capacity()
: fmt::Buffer< T >
, numeric::random::WeightedReservoirSampler< T >
, ObjexxFCL::Chunk< T >
, utility::heap
, utility::keys::ClassKeyMap< K, T, C >
, utility::keys::ClassKeyVector< K, T, C >
, utility::keys::KeyVector< K, T >
, utility::keys::SmallKeyMap< K, T >
, utility::keys::SmallKeyVector< K, T >
- CArray()
: ObjexxFCL::CArray< typename >
- CArrayP()
: ObjexxFCL::CArrayP< typename >
- cast()
: fmt::internal::BasicCharTraits< Char >
- CaToAllAtom()
: CaToAllAtom
- CAtrace()
: CAtrace
- center()
: ObjexxFCL::Cstring
, ObjexxFCL::Fstring
- centered()
: ObjexxFCL::Cstring
, ObjexxFCL::Fstring
- cfg_nd()
: numeric::fourier::kiss_fftndr_state
- cfg_r()
: numeric::fourier::kiss_fftndr_state
- change_occupancy()
: app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
- changeLine()
: app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.TkConsoleView
- changeWeight()
: app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
- channel()
: basic::Tracer
- channel_color()
: basic::Tracer
- channel_name_color()
: basic::Tracer
- char_msg()
: utility::SimulateMPIMessage
- char_of()
: ObjexxFCL::Fstring
- check_array_scalar()
: array_scalar_converter< T >
- check_block_entry()
: yaml.scanner.Scanner
- check_crc()
: utility::io::izstream
, zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
- check_data()
: yaml.constructor.BaseConstructor
- check_data_size()
: zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
- check_directive()
: yaml.scanner.Scanner
- check_document_end()
: yaml.scanner.Scanner
- check_document_start()
: yaml.scanner.Scanner
- check_empty_document()
: yaml.emitter.Emitter
- check_empty_mapping()
: yaml.emitter.Emitter
- check_empty_sequence()
: yaml.emitter.Emitter
- check_event()
: yaml.parser.Parser
- check_for_residue_existance()
: app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
- check_for_rosetta_off_aa()
: app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
- check_for_unrecognized_aa()
: app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
- check_header()
: zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
- check_if_on_by_default()
: app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.Properties
- check_if_rosetta_resnum_is_part_of_region()
: app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
- check_invariants()
: numeric::Polynomial_1d
- check_key()
: utility::options::OptionCollection
, yaml.scanner.Scanner
- check_no_auto_index()
: fmt::internal::FormatterBase
- check_node()
: yaml.composer.Composer
- check_plain()
: yaml.scanner.Scanner
- check_printable()
: yaml.reader.Reader
- check_region_can_be_added()
: app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
- check_residue_callback()
: app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
- check_resolver_prefix()
: yaml.resolver.BaseResolver
- check_restricted_access()
: utility::options::Option
- check_simple_key()
: yaml.emitter.Emitter
- check_specs()
: utility::options::OptionCollection
- check_table_and_perform_write()
: basic::database::schema_generator::Schema
- check_token()
: yaml.scanner.Scanner
- check_type()
: utility::json_spirit::Value_impl< Config >
- check_value()
: yaml.scanner.Scanner
- check_values()
: utility::options::OptionCollection
- check_zero_dim_array()
: array_scalar_converter< T >
- child()
: numeric::expression_parser::ArithmeticASTFactor
- children_begin()
: numeric::expression_parser::ArithmeticASTExpression
, numeric::expression_parser::ArithmeticASTFunction
, numeric::expression_parser::ArithmeticASTRestExpression
, numeric::expression_parser::ArithmeticASTRestTerm
, numeric::expression_parser::ArithmeticASTTerm
- children_end()
: numeric::expression_parser::ArithmeticASTExpression
, numeric::expression_parser::ArithmeticASTFunction
, numeric::expression_parser::ArithmeticASTRestExpression
, numeric::expression_parser::ArithmeticASTRestTerm
, numeric::expression_parser::ArithmeticASTTerm
- choose_load_pose()
: app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
- choose_scalar_style()
: yaml.emitter.Emitter
- choose_set_output_dir()
: app.pyrosetta_toolkit.window_main.frames.OutputFrame.OutputFrame
- Chunk()
: ObjexxFCL::Chunk< T >
- chunk_exponent()
: ObjexxFCL::ChunkVector< typename >
- chunk_size()
: ObjexxFCL::ChunkVector< typename >
- ChunkExponent()
: ObjexxFCL::ChunkExponent
- ChunkVector()
: ObjexxFCL::ChunkVector< typename >
- cl_value()
: utility::options::Option
, utility::options::ResidueChainVectorOption
, utility::options::ScalarOption
, utility::options::ScalarOption_T_< K, T >
, utility::options::VariantOption< O >
, utility::options::VectorOption
, utility::options::VectorOption_T_< K, T >
- clash()
: numeric::geometry::hashing::xyzStripeHash
- clash_amount()
: numeric::geometry::hashing::xyzStripeHash
- clash_check_ball()
: numeric::geometry::hashing::xyzStripeHash
- clash_check_residue_pairs()
: numeric::geometry::hashing::xyzStripeHash
- clash_not_resid()
: numeric::geometry::hashing::xyzStripeHash
- clash_raw()
: numeric::geometry::hashing::xyzStripeHash
- clash_score()
: ScoreFragmentSetMover
- ClassBinder()
: binder::ClassBinder
- ClassKeyMap()
: utility::keys::ClassKeyMap< K, T, C >
- ClassKeyVector()
: utility::keys::ClassKeyVector< K, T, C >
- ClassVisitor()
: ClassVisitor
- clean_line()
: tools.dox_extract.dox_extract
- clean_PDB()
: app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
- cleaned()
: utility::options::OptionCollection
- clear()
: app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable
, basic::datacache::DataCache< Data >
, basic::resource_manager::LazyResourceManager
, basic::resource_manager::ResourceManager
- Clear()
: basic::sampling::orientations::QuatSet
- clear()
: binder::IncludeSet
, fmt::BasicWriter< Char >
, fmt::Buffer< T >
, Histogram
, numeric::IntervalSet< typename >
, numeric::random::WeightedSampler
, numeric::sphericalVector< typename >
, numeric::xyzMatrix< typename >
, numeric::xyzTriple< typename >
, numeric::xyzVector< typename >
, ObjexxFCL::CArray< typename >
, ObjexxFCL::CArrayP< typename >
, ObjexxFCL::Chunk< T >
, ObjexxFCL::ChunkVector< typename >
, ObjexxFCL::Dimension
, ObjexxFCL::DynamicIndexRange
, ObjexxFCL::FArray1< typename >
, ObjexxFCL::FArray1A< typename >
, ObjexxFCL::FArray1D< typename >
, ObjexxFCL::FArray1P< typename >
, ObjexxFCL::FArray2< typename >
, ObjexxFCL::FArray2A< typename >
, ObjexxFCL::FArray2D< typename >
, ObjexxFCL::FArray2P< typename >
, ObjexxFCL::FArray3< typename >
, ObjexxFCL::FArray3A< typename >
, ObjexxFCL::FArray3D< typename >
, ObjexxFCL::FArray3P< typename >
, ObjexxFCL::FArray4< typename >
, ObjexxFCL::FArray4A< typename >
, ObjexxFCL::FArray4D< typename >
, ObjexxFCL::FArray4P< typename >
, ObjexxFCL::FArray5< typename >
, ObjexxFCL::FArray5A< typename >
, ObjexxFCL::FArray5D< typename >
, ObjexxFCL::FArray5P< typename >
, ObjexxFCL::FArray6< typename >
, ObjexxFCL::FArray6A< typename >
, ObjexxFCL::FArray6D< typename >
, ObjexxFCL::FArray6P< typename >
, ObjexxFCL::FArray< typename >
, ObjexxFCL::FArrayInitializer< typename, class >
, ObjexxFCL::Fstring
, ObjexxFCL::IndexRange
, ObjexxFCL::KeyFArray1D< typename >
, ObjexxFCL::KeyFArray2D< typename >
, ObjexxFCL::KeyFArray3D< typename >
, ObjexxFCL::KeyFArray4D< typename >
, ObjexxFCL::KeyFArray5D< typename >
, ObjexxFCL::KeyFArray6D< typename >
, ObjexxFCL::StaticIndexRange
, utility::Bound< typename >
, utility::file::FileName
, utility::file::PathName
, utility::in_place_list< T >
, utility::io::FileContentsMap
, utility::io::icstream
, utility::io::irstream
, utility::io::izstream
, utility::io::ocstream
, utility::io::orstream
, utility::io::ozstream
, utility::keys::ClassKeyMap< K, T, C >
, utility::keys::ClassKeyVector< K, T, C >
, utility::keys::KeyLookup< K >
, utility::keys::KeyVector< K, T >
, utility::keys::SmallKeyMap< K, T >
, utility::keys::SmallKeyVector< K, T >
, utility::options::Option
, utility::options::ScalarOption
, utility::options::ScalarOption_T_< K, T >
, utility::options::VariantOption< O >
, utility::options::VectorOption
, utility::options::VectorOption_T_< K, T >
, utility::recent_history_queue
, utility::signals::SignalHub< ResultType, Signal >
, utility::tag::Tag
- clear_buffer()
: utility::signals::BufferedSignalHub< ResultType, Signal >
- clear_defaults()
: app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
- clear_input_files()
: utility::Inline_File_Provider
- clear_no_notify()
: ObjexxFCL::Dimension
, ObjexxFCL::DynamicIndexRange
- clear_num_string_on_new_input()
: app.pyrosetta_toolkit.pyrosetta_toolkit.main_window
- clear_processed_msgs()
: utility::SimulateMPIData
- clear_rms()
: numeric::model_quality::RmsData
- clear_rows()
: app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable
- clear_str()
: tools.DoxygenExtractorPyPP.doxygen_doc_extractor
- clear_tokens()
: utility::signals::TokenHub< ResultType, Signal >
- clearCurrentResidue()
: app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
- clearResData()
: app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
- click_restype_callback()
: app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
- cloak_and_setup()
: HDdesignMover
- clone()
: basic::datacache::CacheableData
, basic::datacache::CacheableString
, basic::datacache::CacheableStringFloatMap
, basic::datacache::CacheableStringMap
, basic::datacache::DiagnosticData
, basic::datacache::WriteableCacheableMap
, basic::MetricValue< T >
, basic::MetricValueBase
, CoupledMovesProtocol
, ExemplarMover
, ExposedStrandMover
, HDdesignMover
, HDmakerMover
, LigandDockBench
, Minimize
, MyScoreMover
, NCMinimize
- Clone()
: numeric::interpolation::spline::BicubicSpline
- clone()
: numeric::interpolation::spline::CubicSpline
- Clone()
: numeric::interpolation::spline::PolycubicSpline
, numeric::interpolation::spline::TricubicSpline
, numeric::MathMatrix< T >
- clone()
: numeric::MathVector< T >
, ObjexxFCL::Dimension
, ObjexxFCL::DimensionExpression
, ObjexxFCL::DimensionExpressionCon
, ObjexxFCL::DimensionExpressionCube
, ObjexxFCL::DimensionExpressionDiv
, ObjexxFCL::DimensionExpressionMax
, ObjexxFCL::DimensionExpressionMin
, ObjexxFCL::DimensionExpressionMul
, ObjexxFCL::DimensionExpressionPow
, ObjexxFCL::DimensionExpressionRef
, ObjexxFCL::DimensionExpressionSquare
, ObjexxFCL::DimensionExpressionSub
, ObjexxFCL::DimensionExpressionSum
, test.T850_SubClassing.MyNewCI1B
- Clone()
: utility::graph::RingDetection< Graph >
- clone()
: utility::keys::AutoKey< O, S, C >
, utility::keys::Key
, utility::keys::UserKey< O, S, C >
, utility::options::AnyOption< T >
, utility::options::AnyOptionKey
, utility::options::AnyVectorOption< T >
, utility::options::AnyVectorOptionKey
, utility::options::BooleanOption
, utility::options::BooleanOptionKey
, utility::options::BooleanVectorOption
, utility::options::BooleanVectorOptionKey
, utility::options::FileOption
, utility::options::FileOptionKey
, utility::options::FileVectorOption
, utility::options::FileVectorOptionKey
, utility::options::IntegerOption
, utility::options::IntegerOptionKey
, utility::options::IntegerVectorOption
, utility::options::IntegerVectorOptionKey
, utility::options::Option
, utility::options::OptionKey
, utility::options::PathOption
, utility::options::PathOptionKey
, utility::options::PathVectorOption
, utility::options::PathVectorOptionKey
, utility::options::RealOption
, utility::options::RealOptionKey
, utility::options::RealVectorOption
, utility::options::RealVectorOptionKey
, utility::options::ResidueChainVectorOption
, utility::options::ResidueChainVectorOptionKey
, utility::options::ScalarOption
, utility::options::ScalarOption_T_< K, T >
, utility::options::ScalarOptionKey
, utility::options::StringOption
, utility::options::StringOptionKey
, utility::options::StringVectorOption
, utility::options::StringVectorOptionKey
, utility::options::VectorOption
, utility::options::VectorOption_T_< K, T >
, utility::options::VectorOptionKey
, utility::tag::Tag
- closability_score()
: ScoreFragmentSetMover
- close()
: fmt::BufferedFile
, fmt::File
, options.KeepSameFile
, utility::io::izstream
, utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
, utility::io::ozstream
, yaml.serializer.Serializer
- closest_match()
: numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
- closest_match_subset()
: numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
- cluster()
: numeric::AgglomerativeHierarchicalClusterer
- cluster_frags()
: DockFragmentsMover
- ClusteringTreeNode()
: numeric::ClusteringTreeNode
- ClusterOptions()
: numeric::ClusterOptions
- code()
: binder::Binder
, utility::keys::AutoKey< O, S, C >
, utility::keys::Key
, utility::keys::UserKey< O, S, C >
, utility::keys::VariantKey< K >
, utility::options::Option
, utility::options::ScalarOption_T_< K, T >
, utility::options::VariantOption< O >
, utility::options::VectorOption_T_< K, T >
- coefficients()
: numeric::Polynomial_1d
- coefLoc()
: numeric::fourier::SO3coeffs
- col()
: numeric::xyzMatrix< typename >
- col_x()
: numeric::xyzMatrix< typename >
- col_y()
: numeric::xyzMatrix< typename >
- col_z()
: numeric::xyzMatrix< typename >
- collapse()
: numeric::MultiDimensionalHistogram
- color_region()
: app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL
- color_region_from_entry()
: app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
- color_region_from_listbox()
: app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
- color_regions()
: app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL
- color_residue()
: app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
, app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL
- ColPointers()
: numeric::ColPointers< T >
- cols()
: numeric::xyzMatrix< typename >
- cols_constructor()
: numeric::xyzMatrix< typename >
- ColsPointer()
: numeric::ColsPointer< T >
- Column()
: basic::database::schema_generator::Column
- columns()
: basic::database::schema_generator::ForeignKey
, basic::database::schema_generator::Index
, basic::database::schema_generator::PrimaryKey
- ColVectors()
: numeric::ColVectors< T >
- CombinePaths()
: utility::graph::RingDetection< Graph >
- commit_transaction()
: utility::sql_database::session
- common_option_disable()
: app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
- common_type()
: utility::tag::XMLSchemaType
- comparable()
: utility::keys::AutoKey< O, S, C >
, utility::keys::Key
, utility::keys::UserKey< O, S, C >
- comparator()
: numeric::AgglomerativeHierarchicalClusterer
, numeric::AverageLinkClusterer
, numeric::CompleteLinkClusterer
, numeric::SingleLinkClusterer
- compare()
: fmt::BasicStringRef< Char >
, sidechain_cst_3.Residue
- CompareKDPoints()
: numeric::kdtree::CompareKDPoints
- ComparingTracer()
: basic::ComparingTracer
- compileBindings()
: BuildBindings.ModuleBuilder
, BuildPackagedBindings.ModuleBuilder
- complete()
: app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IterableIPShell
- complex_type_naming_func()
: utility::tag::XMLSchemaComplexTypeGenerator
, utility::tag::XMLSchemaComplexTypeGeneratorImpl
, utility::tag::XMLSchemaSimpleSubelementList
- complex_typename_for_element()
: utility::tag::XMLSchemaSimpleSubelementList
- compose_document()
: yaml.composer.Composer
- compose_mapping_node()
: yaml.composer.Composer
- compose_node()
: yaml.composer.Composer
- compose_scalar_node()
: yaml.composer.Composer
- compose_sequence_node()
: yaml.composer.Composer
- compress()
: ObjexxFCL::Cstring
, ObjexxFCL::Fstring
- compressed()
: ObjexxFCL::Cstring
, ObjexxFCL::Fstring
, utility::io::icstream
, utility::io::irstream
, utility::io::izstream
, utility::io::ocstream
, utility::io::orstream
, utility::io::ozstream
- compute()
: numeric::Calculator
, numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
- compute_in_place()
: numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
- compute_lb_function_solution()
: numeric::interpolation::spline::Interpolator
- compute_ligand_score_bonus()
: CoupledMovesProtocol
- compute_ub_function_solution()
: numeric::interpolation::spline::Interpolator
- computed_last_chunk_size()
: ObjexxFCL::ChunkVector< typename >
- computed_n_chunk()
: ObjexxFCL::ChunkVector< typename >
- condition()
: numeric::expression_parser::ITEExpression
- Config()
: binder::Config
- conjugate()
: numeric::Quaternion< typename >
- conjugated()
: numeric::Quaternion< typename >
- connect()
: utility::signals::SignalHub< ResultType, Signal >
- connect_tokenize()
: utility::signals::TokenHub< ResultType, Signal >
- consider_sample()
: numeric::random::WeightedReservoirSampler< T >
- const_iterator()
: numeric::geometry::hashing::xyzStripeHash::const_iterator
- const_location()
: numeric::kdtree::KDPoint
- constant()
: ObjexxFCL::Dimension
, ObjexxFCL::DimensionExpression
, ObjexxFCL::DimensionExpressionCon
, ObjexxFCL::DimensionExpressionCube
, ObjexxFCL::DimensionExpressionDiv
, ObjexxFCL::DimensionExpressionMax
, ObjexxFCL::DimensionExpressionMin
, ObjexxFCL::DimensionExpressionMul
, ObjexxFCL::DimensionExpressionPow
, ObjexxFCL::DimensionExpressionRef
, ObjexxFCL::DimensionExpressionSquare
, ObjexxFCL::DimensionExpressionSub
, ObjexxFCL::DimensionExpressionSum
- ConstDataMap()
: basic::datacache::ConstDataMap
- Constraint()
: basic::database::schema_generator::Constraint
- construct_document()
: yaml.constructor.BaseConstructor
- construct_mapping()
: yaml.constructor.BaseConstructor
, yaml.constructor.SafeConstructor
- construct_object()
: yaml.constructor.BaseConstructor
- construct_pairs()
: yaml.constructor.BaseConstructor
- construct_python_complex()
: yaml.constructor.Constructor
- construct_python_long()
: yaml.constructor.Constructor
- construct_python_module()
: yaml.constructor.Constructor
- construct_python_name()
: yaml.constructor.Constructor
- construct_python_object()
: yaml.constructor.Constructor
- construct_python_object_apply()
: yaml.constructor.Constructor
- construct_python_object_new()
: yaml.constructor.Constructor
- construct_python_str()
: yaml.constructor.Constructor
- construct_python_tuple()
: yaml.constructor.Constructor
- construct_python_unicode()
: yaml.constructor.Constructor
- construct_scalar()
: yaml.constructor.BaseConstructor
, yaml.constructor.SafeConstructor
- construct_sequence()
: yaml.constructor.BaseConstructor
- construct_undefined()
: yaml.constructor.SafeConstructor
- construct_yaml_binary()
: yaml.constructor.SafeConstructor
- construct_yaml_bool()
: yaml.constructor.SafeConstructor
- construct_yaml_float()
: yaml.constructor.SafeConstructor
- construct_yaml_int()
: yaml.constructor.SafeConstructor
- construct_yaml_map()
: yaml.constructor.SafeConstructor
- construct_yaml_null()
: yaml.constructor.SafeConstructor
- construct_yaml_object()
: yaml.constructor.SafeConstructor
- construct_yaml_omap()
: yaml.constructor.SafeConstructor
- construct_yaml_pairs()
: yaml.constructor.SafeConstructor
- construct_yaml_seq()
: yaml.constructor.SafeConstructor
- construct_yaml_set()
: yaml.constructor.SafeConstructor
- construct_yaml_str()
: yaml.constructor.SafeConstructor
- construct_yaml_timestamp()
: yaml.constructor.SafeConstructor
- contain()
: ObjexxFCL::DynamicIndexRange
, ObjexxFCL::IndexRange
, ObjexxFCL::StaticIndexRange
- contain_nic()
: ObjexxFCL::DynamicIndexRange
- contains()
: numeric::geometry::BoundingBox< typename >
, numeric::geometry::hashing::SixDCoordinateBinner
, ObjexxFCL::DynamicIndexRange
, ObjexxFCL::FArray1< typename >
, ObjexxFCL::FArray1A< typename >
, ObjexxFCL::FArray1D< typename >
, ObjexxFCL::FArray1P< typename >
, ObjexxFCL::FArray2< typename >
, ObjexxFCL::FArray2A< typename >
, ObjexxFCL::FArray2D< typename >
, ObjexxFCL::FArray2P< typename >
, ObjexxFCL::FArray3< typename >
, ObjexxFCL::FArray3A< typename >
, ObjexxFCL::FArray3D< typename >
, ObjexxFCL::FArray3P< typename >
, ObjexxFCL::FArray4< typename >
, ObjexxFCL::FArray4A< typename >
, ObjexxFCL::FArray4D< typename >
, ObjexxFCL::FArray4P< typename >
, ObjexxFCL::FArray5< typename >
, ObjexxFCL::FArray5A< typename >
, ObjexxFCL::FArray5D< typename >
, ObjexxFCL::FArray5P< typename >
, ObjexxFCL::FArray6< typename >
, ObjexxFCL::FArray6A< typename >
, ObjexxFCL::FArray6D< typename >
, ObjexxFCL::FArray6P< typename >
, ObjexxFCL::IndexRange
, ObjexxFCL::KeyFArray1D< typename >
, ObjexxFCL::KeyFArray2D< typename >
, ObjexxFCL::KeyFArray3D< typename >
, ObjexxFCL::KeyFArray4D< typename >
, ObjexxFCL::KeyFArray5D< typename >
, ObjexxFCL::KeyFArray6D< typename >
, utility::vectorL< SSize, T, A >
- contains_composite_elements()
: utility::json_spirit::Generator< Value_type, Ostream_type >
- continue_at_dimension()
: utility::FixedSizeLexicographicalIterator< S >
, utility::LexicographicalIterator
- contract()
: numeric::geometry::BoundingBox< typename >
- convert()
: fmt::internal::CharTraits< char >
, fmt::internal::CharTraits< wchar_t >
, utility::py::COP_to_Python_converter< T >
- convert_array_scalar()
: array_scalar_converter< T >
- convert_to_shell()
: calccontacts.contactProtein
- convert_zero_dim_array()
: array_scalar_converter< T >
- CoordinateArray_RMSD_FlatLookup()
: numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
- copy()
: app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable
, calccontacts.resContact
, loadPDB.PDBres
, loadPDB.Protein
, loadPDB.ProteinChain
, ObjexxFCL::Fstring
- copy_from()
: utility::options::Option
, utility::options::ResidueChainVectorOption
, utility::options::ScalarOption_T_< K, T >
, utility::options::VectorOption_T_< K, T >
- copy_leaf_ids()
: numeric::ClusteringTreeNode
- copy_member_ids()
: numeric::ClusteringTreeNode
- copy_results()
: app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
- copy_results2()
: app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
- could_not_create_resource_error_message()
: basic::resource_manager::fallback_configuration::NativeFallbackConfiguration
, basic::resource_manager::FallbackConfiguration
- count()
: numeric::model_quality::RmsData
- Counter()
: numeric::geometry::hashing::Counter
- counts()
: numeric::MultiDimensionalHistogram
- CoupledMovesProtocol()
: CoupledMovesProtocol
- coval()
: utility::heap
- create()
: utility::factory::Factory< typename >
, utility::tag::Tag
- create_all_nested_namespaces()
: binder::Context
- create_data()
: basic::datacache::WriteableCacheableDataCreator
- create_energy_method()
: test.T850_SubClassing.MyNewCI1B_Creator
- create_expression_tree()
: numeric::expression_parser::ExpressionCreator
- create_fallback_configuration()
: basic::resource_manager::fallback_configuration::NativeFallbackConfigurationCreator
, basic::resource_manager::FallbackConfigurationCreator
, basic::resource_manager::FallbackConfigurationFactory
- create_GUI_objects()
: app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
, app.pyrosetta_toolkit.window_main.frames.OutputFrame.OutputFrame
, app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
, app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
- create_options()
: basic::database::DatabaseSessionOptionsCreator
, basic::resource_manager::ResourceOptionsCreator
- create_resource()
: basic::database::DatabaseSessionLoader
, basic::resource_manager::LazyResourceManager
, basic::resource_manager::ResourceLoader
- create_resource_by_job_tag()
: basic::resource_manager::LazyResourceManager
- create_resource_loader()
: basic::database::DatabaseSessionLoaderCreator
, basic::resource_manager::ResourceLoaderCreator
, basic::resource_manager::ResourceLoaderFactory
- create_resource_locator()
: basic::resource_manager::locator::DatabaseResourceLocatorCreator
, basic::resource_manager::locator::FileListResourceLocatorCreator
, basic::resource_manager::locator::FileSystemResourceLocatorCreator
, basic::resource_manager::locator::NullResourceLocatorCreator
, basic::resource_manager::ResourceLocatorCreator
, basic::resource_manager::ResourceLocatorFactory
- create_resource_manager()
: basic::resource_manager::ResourceManagerCreator
- create_resource_manager_from_options_system()
: basic::resource_manager::ResourceManagerFactory
- create_resource_options()
: basic::resource_manager::ResourceOptionsFactory
- create_resources()
: basic::resource_manager::LazyResourceManager
- create_singleton_instance()
: basic::datacache::WriteableCacheableDataFactory
, basic::mpi::MessageListenerFactory
, basic::resource_manager::FallbackConfigurationFactory
, basic::resource_manager::ResourceLoaderFactory
, basic::resource_manager::ResourceLocatorFactory
, basic::resource_manager::ResourceManagerFactory
, basic::resource_manager::ResourceOptionsFactory
, basic::sampling::orientations::QuaternionGridManager
, utility::Inline_File_Provider
- create_subelement()
: utility::tag::XMLSchemaComplexTypeGeneratorImpl
- CreateASTConsumer()
: BinderFrontendAction
- createAtoms()
: app.pyrosetta_toolkit.modules.Structure.Residue
- createBonds()
: app.pyrosetta_toolkit.modules.Structure.Residue
- creators()
: utility::factory::WidgetFactory< Creator >
- cross()
: numeric::xyzTriple< typename >
, numeric::xyzVector< typename >
- cross_product()
: numeric::xyzTriple< typename >
, numeric::xyzVector< typename >
- CSI_Sequence()
: utility::CSI_Sequence
- Cstring()
: ObjexxFCL::Cstring
- CubicSpline()
: numeric::interpolation::spline::CubicSpline
- curr_num_in_recent_history()
: utility::recent_history_queue
- current_callback_object()
: utility::py::PyExitCallback
- current_links()
: utility::signals::SignalHub< ResultType, Signal >
- custom_type_name()
: utility::tag::XMLSchemaType
- cut_from_map()
: DockFragmentsMover