yeates_align.cc File Reference

#include <core/id/AtomID_Map.hh>
#include <devel/init.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/types.hh>
#include <fstream>
#include <numeric/random/random.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>
#include <sstream>
#include <utility/io/ozstream.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/vector1.hh>
#include <core/pose/init_id_map.hh>
#include <apps/pilot/will/will_util.ihh>

Typedefs
typedef numeric::xyzVector< Real >	Vec
typedef numeric::xyzMatrix< Real >	Mat

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("yeates_align")

Typedef Documentation

Mat

typedef numeric::xyzMatrix<Real> Mat

Vec

typedef numeric::xyzVector<Real> Vec

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::ang, numeric::angle_degrees(), argv, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::cross(), numeric::dihedral(), numeric::xyzVector< T >::distance(), basic::options::OptionKeys::in::file::dssp, test.T009_Exceptions::e, ObjexxFCL::format::F(), utility::file_basename(), PREcst::fname, h, create_a3b_hbs::i, test.T110_numeric::I, basic::init(), create_a3b_hbs::j, numeric::xyzVector< T >::length(), min(), basic::options::option, option, erraser_single_res_analysis::out, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::pr, rot_pose(), numeric::rotation_matrix(), in::file::s(), subloop_histogram::size, superimpose_pose(), symm, TR, trans_pose(), utility_exit_with_message, x, numeric::xyzVector< T >::x(), numeric::xyzVector< T >::y(), and numeric::xyzVector< T >::z().

Variable Documentation

TR

basic::Tracer TR("yeates_align") ( "yeates_align"  )

static

Referenced by main().