HBNet.cc File Reference

base class HBNet; to explicitly detect and design h-bond networks More...

#include <protocols/hbnet/HBNet.hh>
#include <protocols/hbnet/HBNetCreator.hh>
#include <protocols/hbnet/HBNet_util.hh>
#include <utility/io/ozstream.hh>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/vector1.hh>
#include <utility>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.fwd.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/thread_manager/RosettaThreadManager.hh>
#include <basic/thread_manager/RosettaThreadAssignmentInfo.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <core/chemical/AtomType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pack/hbonds/HBondGraph_util.hh>
#include <core/pack/hbonds/HBondGraphInitializerIG.hh>
#include <core/pack/interaction_graph/InteractionGraphBase.hh>
#include <core/pack/interaction_graph/InteractionGraphFactory.hh>
#include <core/pack/interaction_graph/PDInteractionGraph.hh>
#include <core/pack/packer_neighbors.hh>
#include <core/pack/rotamer_set/RotamerLinks.fwd.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSets.hh>
#include <core/pack/rotamer_set/symmetry/SymmetricRotamerSets.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/selection.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/func/Func.hh>
#include <core/scoring/func/FuncFactory.hh>
#include <core/scoring/hbonds/HBondDatabase.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/graph/HBondGraph.hh>
#include <core/scoring/rms_util.hh>
#include <core/select/residue_selector/LayerSelector.hh>
#include <core/select/residue_selector/ResiduePDBInfoHasLabelSelector.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/select/util.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverStatus.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/toolbox/pose_manipulation/pose_manipulation.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/jd2/util.hh>
#include <protocols/residue_selectors/StoreResidueSubsetMover.hh>
#include <protocols/moves/mover_schemas.hh>
#include <numeric/random/random.hh>
#include <protocols/hbnet/NetworkState.hh>
#include <core/pack/task/ResidueLevelTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::hbnet

Functions
static basic::Tracer	protocols::hbnet::TR ("protocols.hbnet.HBNet")
bool	protocols::hbnet::one_network_is_subset_of_other (utility::vector1< HBondResStructCOP > const &residues_i, utility::vector1< HBondResStructCOP > const &residues_j)
void	protocols::hbnet::add_network_resids_to_pose (core::pose::Pose &pose, utility::vector1< core::Size > resids, std::string name_of_subset="HBNet")

Detailed Description

base class HBNet; to explicitly detect and design h-bond networks

Author

Scott Boyken (sboyk.nosp@m.en@g.nosp@m.mail..nosp@m.com)