Here is a list of all class members with links to the classes they belong to:

- h -

• h : protocols::sic_dock::Rose
• h1() : protocols::fldsgn::topology::HelixPairing
• h1_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H1_t_name_ : protocols::antibody::Ab_TemplateInfo
• H1_t_pose_ : protocols::antibody::Ab_TemplateInfo
• h2() : protocols::fldsgn::topology::HelixPairing
• h2_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H2_t_name_ : protocols::antibody::Ab_TemplateInfo
• H2_t_pose_ : protocols::antibody::Ab_TemplateInfo
• H3_base_library : protocols::antibody_legacy::CDRH3Modeler
• H3_base_library_ : protocols::antibody::H3CterInsert , protocols::antibody_legacy::AntibodyModeler
• h3_base_type_enum_to_string() : protocols::antibody::AntibodyEnumManager
• h3_base_type_string_to_enum() : protocols::antibody::AntibodyEnumManager
• h3_base_type_to_enum_ : protocols::antibody::AntibodyEnumManager
• h3_base_type_to_string_ : protocols::antibody::AntibodyEnumManager
• h3_cter_insert_mover_ : protocols::antibody::ModelCDRH3
• h3_filter_ : protocols::antibody::AntibodyModelerProtocol
• H3_filter_ : protocols::antibody::H3PerturbCCD , protocols::antibody::H3RefineCCD , protocols::antibody::RefineOneCDRLoop
• h3_filter_ : protocols::antibody::SnugDock , protocols::antibody::SnugDockProtocol
• H3_filter_ : protocols::antibody_legacy::CDRH3Modeler
• h3_filter_tolerance_ : protocols::antibody::AntibodyModelerProtocol , protocols::antibody::SnugDock , protocols::antibody::SnugDockProtocol
• h3_flank_ : protocols::antibody_legacy::CDRH3Modeler
• h3_fraction_ : protocols::antibody::H3PerturbCCD
• h3_no_stem_graft_ : protocols::antibody::GraftCDRLoopsProtocol
• h3_perturb_ccd_build_ : protocols::antibody::ModelCDRH3
• h3_perturb_type_ : protocols::antibody::AntibodyModelerProtocol
• h3_random_cut_ : protocols::antibody_legacy::CDRH3Modeler
• h3_refine_type_ : protocols::antibody::AntibodyModelerProtocol
• H3_t_name_ : protocols::antibody::Ab_TemplateInfo
• H3_t_pose_ : protocols::antibody::Ab_TemplateInfo
• H3_ter_library_filename_ : protocols::antibody::H3CterInsert
• H3CterInsert() : protocols::antibody::H3CterInsert
• H3PerturbCCD() : protocols::antibody::H3PerturbCCD
• H3RefineCCD() : protocols::antibody::H3RefineCCD
• H_atom_id() : protocols::match::upstream::UpstreamResTypeGeometry
• H_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• H_chain_ : protocols::antibody::AntibodyInfo
• H_mult_ : protocols::frag_picker::scores::TalosSSSimilarity
• H_pos() : protocols::match::upstream::ProteinBackboneBuildPoint
• H_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• HA_atom_id() : protocols::match::upstream::UpstreamResTypeGeometry
• HA_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• HA_pos() : protocols::match::upstream::ProteinBackboneBuildPoint
• HA_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• hack_assemble_next_loop_combination() : protocols::enzdes::EnzdesFlexBBProtocol
• hack_fillup_frag_designabilities() : protocols::enzdes::EnzdesFlexibleRegion
• half_bin_width_root_three_ : protocols::match::Bool3DGrid
• halfdimprods_ : protocols::match::Bool3DGrid
• halfdimsizes_ : protocols::match::Bool3DGrid
• halt_on_error_ : protocols::matdes::SchemePlaceMotifsMover
• HamiltonianExchange() : protocols::canonical_sampling::HamiltonianExchange
• hamiltonians_ : protocols::canonical_sampling::HamiltonianExchange
• handedness_score_ : protocols::simple_filters::SheetFilter
• handle_function_expression() : protocols::optimize_weights::WrappedOptEExpressionCreator , protocols::pack_daemon::EntityFuncExpressionCreator , protocols::pack_daemon::VectorExpressionCreator
• handle_interrupt() : protocols::jd2::archive::MPIArchiveJobDistributor , protocols::jd2::FileSystemJobDistributor , protocols::jd2::JobDistributor , protocols::jd2::MPIFileBufJobDistributor , protocols::jd2::MPIMultiCommJobDistributor , protocols::jd2::MPIWorkPartitionJobDistributor , protocols::jd2::MPIWorkPoolJobDistributor , protocols::jd2::MSDJobDistributor , protocols::jd2::ShuffleFileSystemJobDistributor
• handle_variable_expression() : protocols::optimize_weights::WrappedOptEExpressionCreator , protocols::pack_daemon::EntityFuncExpressionCreator , protocols::pack_daemon::VectorExpressionCreator
• handshake_stub_sets() : protocols::hotspot_hashing::HotspotStubSet
• hard_scorefxn_ : protocols::ligand_docking::LigandBaseProtocol
• harmonic_ca_cst_std_dev : protocols::simple_moves::ShakeStructureMover
• has() : protocols::abinitio::StructureStore , protocols::loops::Loops , protocols::noesy_assign::PeakAssignmentResidueMap
• has_algorithm() : protocols::match::upstream::BuildSet
• has_another_job() : protocols::stepwise::setup::StepWiseCSA_JobDistributor , protocols::stepwise::setup::StepWiseJobDistributor , protocols::stepwise::setup::StepWiseMonteCarloJobDistributor
• has_another_pose() : protocols::stepwise::modeler::protein::InputStreamWithResidueInfo
• has_atom() : protocols::frag_picker::CSTalosIO , protocols::frag_picker::scores::AtomBasedConstraintsScore
• has_bulge() : protocols::fldsgn::topology::StrandPairing
• has_bulge_ : protocols::fldsgn::topology::StrandPairing
• has_C_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• has_CA_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• has_CB_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• has_chainbreaks_to_close() : protocols::topology_broker::TopologyBroker
• has_chemical_shifts() : protocols::frag_picker::VallResidue
• has_child_ : protocols::canonical_sampling::mc_convergence_checks::HPool_RMSD
• has_cluster_for_cdr() : protocols::antibody::AntibodyInfo
• has_connected_resonances() : protocols::noesy_assign::Resonance
• has_constraints() : protocols::abinitio::Template , protocols::forge::remodel::LineObject
• has_dependencies() : protocols::forge::build::BuildInstruction
• has_design_info_ : protocols::forge::remodel::RemodelData
• has_domain() : protocols::toolbox::AllowInsert
• has_empty_ : protocols::stepwise::sampler::StepWiseSamplerAny
• has_entry() : protocols::frag_picker::CSTalosIO , protocols::frag_picker::PhiPsiTalosIO
• has_evaluator() : protocols::jd2::archive::EvaluatedArchive
• has_exclude_residues_vector() : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• has_exclude_residues_vector_changed() : protocols::scoring::methods::pcs::PCS_Energy_parameters_manager , protocols::scoring::methods::pcsTs1::PCS_Energy_parameters_manager_Ts1 , protocols::scoring::methods::pcsTs2::PCS_Energy_parameters_manager_Ts2 , protocols::scoring::methods::pcsTs3::PCS_Energy_parameters_manager_Ts3 , protocols::scoring::methods::pcsTs4::PCS_Energy_parameters_manager_Ts4
• has_finished() : protocols::jd2::archive::Batch
• has_finished_ : protocols::jd2::archive::Batch
• has_geometric_connection() : protocols::generalized_kinematic_closure::GeneralizedKIC
• has_H_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• has_HA_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• has_ideal_geometry() : protocols::simple_moves::MinimalRotamer
• has_key_ : protocols::frag_picker::VallChunk
• has_label() : protocols::noesy_assign::CrossPeak3D , protocols::noesy_assign::CrossPeak4D , protocols::noesy_assign::CrossPeak , protocols::noesy_assign::CrossPeakInfo , protocols::noesy_assign::PeakAssignment
• has_ligand_ : protocols::forge::remodel::RemodelMover::instruction_flags
• has_model() : protocols::abinitio::PairingStatEntry
• has_N_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• has_next_level() : protocols::canonical_sampling::mc_convergence_checks::HierarchicalLevel
• has_nth_pose() : protocols::inputter::FastaInputter , protocols::inputter::Inputter , protocols::inputter::PDBInputter , protocols::inputter::SilentFileInputter
• has_O_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• has_open_slaves() : protocols::jd2::SingleFileBuffer
• has_open_status() : protocols::wum2::EndPoint
• has_option() : protocols::jd2::JD2ResourceManager
• has_orientation_and_pleating() : protocols::jumping::JumpSample
• has_pairings() : protocols::abinitio::Templates
• has_passport() : protocols::environment::ClientMover , protocols::environment::ProtectedConformation
• has_path() : protocols::motifs::Motif
• has_path_ : protocols::motifs::Motif
• has_physical_cut : protocols::environment::claims::JumpElement
• has_pose() : protocols::inputter::InputterStream
• has_precomputed_move() : protocols::stepwise::modeler::precomputed::PrecomputedLibraryMover
• has_profile() : protocols::frag_picker::VallResidue
• has_profile_struct() : protocols::frag_picker::VallResidue
• has_proton() : protocols::noesy_assign::CrossPeak , protocols::noesy_assign::PeakAssignment
• has_remark() : protocols::motifs::Motif
• has_remark_ : protocols::motifs::Motif
• has_residue() : protocols::noesy_assign::ResonanceList
• has_resnum() : protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb
• has_resource_with_description() : protocols::jd2::JD2ResourceManager
• has_restype() : protocols::match::upstream::BuildSet
• has_score() : protocols::mpi_refinement::MultiObjective
• has_segment() : protocols::backrub::BackrubMover
• has_sequence_claimer() : protocols::topology_broker::TopologyBroker
• has_silent_in() : protocols::jd2::archive::Batch
• has_silent_in_ : protocols::jd2::archive::Batch
• has_task() : protocols::toolbox::task_operations::STMStoredTask
• has_task_factory_ : protocols::simple_moves::AddConstraintsToCurrentConformationMover
• has_template() : protocols::abinitio::Templates
• has_type() : protocols::loops::loops_definers::LoopsDefinerFactory
• has_upstream_only_geomcsts() : protocols::match::Matcher
• has_value() : protocols::farna::BasePairStepLibrary
• has_vec_inconsistency() : protocols::antibody::AntibodyDatabaseManager
• hash() : protocols::environment::AutoCutData , protocols::genetic_algorithm::EntityElement , protocols::multistate_design::PosType
• Hash : protocols::sic_dock::Rose
• hash_ : protocols::environment::AutoCutData , protocols::loophash::LoopHashLibrary , protocols::loophash::LoopHashMap , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::MatchOutputTracker , protocols::match::OccupiedSpaceHash
• hash_file_names_ : protocols::ligand_docking::WriteLigandMolFile
• hash_hits() : protocols::match::HitNeighborFinder
• hash_index() : protocols::loophash::LoopHashMap
• hash_pose1_ : protocols::sic_dock::CBScore , protocols::sic_dock::scores::MotifHashRigidScore
• hash_sizes() : protocols::loophash::LoopHashLibrary
• hash_sizes_ : protocols::loophash::LoopHashLibrary
• HashCOP : protocols::sic_dock::Rose
• hasher : protocols::abinitio::IterativeBase
• hashin_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• HashOP : protocols::sic_dock::Rose
• hashout_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hasInsertion : protocols::forge::remodel::RemodelWorkingSet
• hasNext() : protocols::viewer::triangleIterator
• have_edges_copy_alternate_to_current() : protocols::flexpack::interaction_graph::FlexbbNode
• have_edges_copy_alternate_to_current_following_flexbb_accept() : protocols::flexpack::interaction_graph::FlexbbNode
• have_mutated_residue() : protocols::simple_moves::sidechain_moves::SidechainMoverBase
• hb_database : protocols::toolbox::pose_metric_calculators::NumberHBondsCalculator
• hb_database_ : protocols::dna::RotamerDNAHBondFilter , protocols::toolbox::pose_metric_calculators::SemiExplicitWaterUnsatisfiedPolarsCalculator
• HB_DHO_AngleList : protocols::sparta::PDB
• hb_eval_tuples_ : protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hb_filter : protocols::flexpep_docking::FlexPepDockingFlags
• HB_HOA_AngleList : protocols::sparta::PDB
• HbaGrid() : protocols::qsar::scoring_grid::HbaGrid
• HbdGrid() : protocols::qsar::scoring_grid::HbdGrid
• HBDistList : protocols::sparta::PDB
• HBEnergyList : protocols::sparta::PDB
• hbond_acceptor_limit_ : protocols::ligand_docking::HBondAcceptorFilter
• hbond_database_ : protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hbond_donor_limit_ : protocols::ligand_docking::HBondDonorFilter
• hbond_E_fraction : protocols::analysis::InterfaceData
• hbond_energy_threshold_ : protocols::protein_interface_design::movers::DesignMinimizeHbonds
• hbond_options_ : protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hbond_set_ : protocols::ligand_docking::rdf::RDFHbondFunction
• HBondAcceptorFilter() : protocols::ligand_docking::HBondAcceptorFilter
• HBondDonorFilter() : protocols::ligand_docking::HBondDonorFilter
• HBondFeatures() : protocols::features::HBondFeatures
• HBondFeaturesCreator() : protocols::features::HBondFeaturesCreator
• HBondMap : protocols::sparta::PDB
• hbondoptions_ : protocols::dna::RotamerDNAHBondFilter
• HBondParameterFeatures() : protocols::features::HBondParameterFeatures
• HBondParameterFeaturesCreator() : protocols::features::HBondParameterFeaturesCreator
• HbondsToAtomFilter() : protocols::protein_interface_design::filters::HbondsToAtomFilter
• HbondsToResidueFilter() : protocols::protein_interface_design::filters::HbondsToResidueFilter
• hbs_post_pos_ : protocols::simple_moves::hbs::HbsPatcher
• hbs_pre_pos_ : protocols::simple_moves::hbs::HbsPatcher
• HbsPatcher() : protocols::simple_moves::hbs::HbsPatcher
• hConvergenceCheck() : protocols::abinitio::hConvergenceCheck , protocols::hybridization::hConvergenceCheck
• hcut_ : protocols::hybridization::DDomainParse , protocols::hybridization::HybridizeProtocol , protocols::hybridization::HybridizeSetup
• he : protocols::sic_dock::XfoxmScore
• header : protocols::wum::WorkUnitBase
• header_ : protocols::analysis::PeptideDeriverMarkdownStreamOutputter
• heat_after_cycles() : protocols::moves::MonteCarlo
• heat_after_cycles_ : protocols::moves::MonteCarlo
• heat_structure_ : protocols::farna::RNA_DeNovoProtocol
• heavy_atom_limit_ : protocols::ligand_docking::HeavyAtomFilter
• heavy_chain : protocols::toolbox::task_operations::RestrictToCDRH3Loop
• HeavyAtomFilter() : protocols::ligand_docking::HeavyAtomFilter
• HeavyAtomNormalization() : protocols::qsar::scoring_grid::HeavyAtomNormalization
• hedge_archive_ : protocols::abinitio::IterativeBase
• HedgeArchive() : protocols::abinitio::HedgeArchive
• helical_sigOffAxisR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigOffAxisT : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigT : protocols::rbsegment_relax::RBSegmentRelax
• HelicalFragment() : protocols::features::helixAssembly::HelicalFragment
• HelicalGaussianMover() : protocols::rbsegment_relax::HelicalGaussianMover
• helices() : protocols::fldsgn::topology::SS_Info2
• helices_ : protocols::fldsgn::topology::SS_Info2 , protocols::rbsegment_relax::IdealizeHelicesMover
• helix() : protocols::fldsgn::topology::BetaAlphaBetaMotif
• Helix() : protocols::fldsgn::topology::Helix
• helix() : protocols::fldsgn::topology::HSSTriplet , protocols::fldsgn::topology::SS_Info2 , protocols::helical_bundle::MakeBundle
• helix2hss_ : protocols::fldsgn::topology::HSSTripletSet
• helix_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet , protocols::nonlocal::HelixRotate
• helix_cap_dist_cutoff_ : protocols::features::helixAssembly::HelixBundleFeatures
• helix_cop() : protocols::helical_bundle::MakeBundle
• helix_cycle() : protocols::fldsgn::topology::BetaAlphaBetaMotif
• helix_cycle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• helix_cycle_as_string() : protocols::fldsgn::topology::BetaAlphaBetaMotif
• helix_end() : protocols::fldsgn::potentials::sspot::HSPairPotential
• helix_end_ : protocols::fldsgn::filters::HelixKinkFilter
• helix_id() : protocols::fldsgn::topology::SS_Info2
• helix_id_ : protocols::fldsgn::topology::SS_Info2
• helix_index() : protocols::helical_bundle::PerturbBundleOptions
• helix_index_ : protocols::helical_bundle::PerturbBundleOptions
• helix_length() : protocols::helical_bundle::MakeBundleHelix
• helix_length_ : protocols::helical_bundle::MakeBundleHelix
• helix_not_defined() : protocols::helical_bundle::PerturbBundle
• helix_pairing() : protocols::fldsgn::topology::HelixPairingSet
• helix_pairings() : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::topology::HelixPairingSet , protocols::jd2::parser::BluePrint
• helix_pairings_ : protocols::abinitio::TemplateJumpSetup , protocols::fldsgn::topology::HelixPairingSet , protocols::jd2::parser::BluePrint
• helix_size_ : protocols::features::helixAssembly::HelixBundleFeatures
• helix_start_ : protocols::fldsgn::filters::HelixKinkFilter
• helix_start_positions_ : protocols::helix_capper::HelixNCapperMover
• HelixBundleFeatures() : protocols::features::helixAssembly::HelixBundleFeatures
• HelixBundleFeaturesCreator() : protocols::features::helixAssembly::HelixBundleFeaturesCreator
• HelixCapFeatures() : protocols::features::HelixCapFeatures
• HelixCapFeaturesCreator() : protocols::features::HelixCapFeaturesCreator
• helixjump_pick_list_ : protocols::abinitio::Templates
• helixjump_picks() : protocols::abinitio::Templates
• HelixKinkFilter() : protocols::fldsgn::filters::HelixKinkFilter
• HelixMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• HelixNCapperMover() : protocols::helix_capper::HelixNCapperMover
• HelixPairing : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential , protocols::fldsgn::topology::HelixPairing
• HelixPairingFilter() : protocols::fldsgn::filters::HelixPairingFilter
• HelixPairings : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• HelixPairingSet : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::HelixPairingSet
• HelixPairingSetOP : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• HelixRotate() : protocols::nonlocal::HelixRotate
• HelixScore() : protocols::sic_dock::HelixScore
• help_ : protocols::forge::remodel::RemodelMover::instruction_flags
• hetatm_prot_cst_weight() : protocols::hybridization::HybridizeSetup
• hetatm_prot_cst_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol , protocols::hybridization::HybridizeSetup
• hetatm_self_cst_weight() : protocols::hybridization::HybridizeSetup
• hetatm_self_cst_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol , protocols::hybridization::HybridizeSetup
• hfr_ : protocols::antibody_legacy::Antibody
• hfr_pose_ : protocols::antibody::ModelCDRH3
• Hfr_t_name_ : protocols::antibody::Ab_TemplateInfo
• hh : protocols::sic_dock::XfoxmScore
• hh_align_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• hh_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hhpot_ : protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• HI_AMBIG : protocols::noesy_assign::CrossPeak
• HI_NEAR_UNAMBIG : protocols::noesy_assign::CrossPeak
• HI_UNAMBIG : protocols::noesy_assign::CrossPeak
• HierarchicalLevel() : protocols::canonical_sampling::mc_convergence_checks::HierarchicalLevel
• high : protocols::make_rot_lib::TorsionRange
• high_color_ : protocols::qsar::RenderGridsToKinemage
• high_cst_ : protocols::antibody::AntibodyModelerProtocol , protocols::antibody::H3RefineCCD , protocols::antibody::RefineOneCDRLoop , protocols::antibody_legacy::CDRH3Modeler
• high_entropy_rms_cutoff_ : protocols::optimize_weights::PNatStructureOptEData
• high_move_temp_ : protocols::antibody::H3RefineCCD
• high_res_angstroms_ : protocols::ligand_docking::LigandArea
• high_res_degrees_ : protocols::ligand_docking::LigandArea
• high_res_dock_inner_cycles_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• high_res_dock_outer_cycles_ : protocols::antibody::design::AntibodyDesignMoverGenerator
• high_resolution_step_ : protocols::antibody::SnugDock
• high_temp_ : protocols::toolbox::task_operations::ModifyAnnealer
• higher_d77_pert_mode_ : protocols::ub_e2c::ubi_e2c_modeler
• highest_probability() : protocols::frag_picker::quota::ABEGO_SS_Config
• highest_tmpl_resnum_ : protocols::hybridization::ChunkTrialMover
• highres_filter_ : protocols::docking::DockingProtocol
• highres_reference_energies_ : protocols::docking::DockingEnsemble
• highres_reference_energy() : protocols::docking::DockingEnsemble
• highres_scorefxn_ : protocols::antibody::H3RefineCCD , protocols::antibody_legacy::CDRH3Modeler , protocols::antibody_legacy::LoopRlxMover , protocols::docking::membrane::MPDockingMover , protocols::seeded_abinitio::SegmentHybridizer
• HighResDocker() : protocols::ligand_docking::HighResDocker
• highval() : protocols::match::downstream::AtomGeometrySecMatchRPE
• highval_ : protocols::match::downstream::AtomGeometrySecMatchRPE
• hijack_loop_reading_code_set_loop_line_begin_token() : protocols::loops::PoseNumberedLoopFileReader
• hires_fpdock_protocol() : protocols::flexpep_docking::FlexPepDockingProtocol
• hires_score_ : protocols::protein_interface_design::movers::LoopMoverFromCommandLine , protocols::protein_interface_design::movers::LoopRemodel
• hires_scorefxn_ : protocols::farna::RNA_DeNovoProtocol , protocols::protein_interface_design::movers::PlaceOnLoop
• Histogram() : protocols::canonical_sampling::BiasEnergy::Histogram< T >
• HistogramFloatOP : protocols::canonical_sampling::BiasEnergy
• HistogramIntOP : protocols::canonical_sampling::BiasEnergy
• histograms() : protocols::simple_moves::DOFHistogramRecorder
• histograms_ : protocols::simple_moves::DOFHistogramRecorder
• history_ : protocols::hybridization::TemplateHistory
• hit() : protocols::match::downstream::TargetRotamerCoords
• hit_cacher_ : protocols::match::output::SameChiBinComboGrouper , protocols::match::output::SameSequenceGrouper
• hit_data_ : protocols::match::downstream::TargetRotamerCoords
• hit_hash_begin() : protocols::match::HitHasher
• hit_hash_end() : protocols::match::HitHasher
• hit_hashes_ : protocols::match::HitHasher
• hit_list_begin() : protocols::match::Matcher
• hit_list_end() : protocols::match::Matcher
• hit_score_cutoff_ : protocols::stepwise::modeler::align::StepWiseLegacyClusterer , protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
• HitCounts : protocols::match::MatchCounter
• HitHash : protocols::match::HitHasher , protocols::match::HitNeighborFinder , protocols::match::MatchCounter
• HitHasher() : protocols::match::HitHasher
• HitIndexList : protocols::match::HitNeighborFinder
• HitList : protocols::match::Matcher
• HitListConstIterator : protocols::match::Matcher
• HitListIterator : protocols::match::Matcher
• HitNeighborFinder() : protocols::match::HitNeighborFinder
• HitPtrList : protocols::match::HitNeighborFinder
• hits() : protocols::match::Matcher
• hits_ : protocols::match::Matcher
• hits_for_focused_geomcst_and_build_point_begin_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_and_build_point_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_potentially_incompatible() : protocols::match::downstream::DownstreamBuilder , protocols::match::downstream::LigandConformerBuilder , protocols::match::downstream::RigidLigandBuilder
• hits_to_include_with_partial_match() : protocols::match::downstream::ClassicMatchAlgorithm , protocols::match::downstream::DownstreamAlgorithm , protocols::match::downstream::SecondaryMatcherToDownstreamResidue , protocols::match::downstream::SecondaryMatcherToUpstreamResidue , protocols::match::output::WriteUpstreamCoordinateKinemage
• hl : protocols::sic_dock::XfoxmScore
• hlevel_ : protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
• HN_S2 : protocols::sparta::PDB
• HolesFilter() : protocols::simple_filters::HolesFilter
• HOMO_Tab : protocols::sparta::Sparta::SpartaLib
• homoFileName : protocols::sparta::Sparta::SpartaLib
• homologs_ : protocols::loophash::BackboneDB
• host_chain() : protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::protein_interface_design::movers::PlacementMinimizationMover , protocols::protein_interface_design::movers::PlaceSimultaneouslyMover
• host_chain_ : protocols::protein_interface_design::filters::StubScoreFilter , protocols::protein_interface_design::movers::BestHotspotCstMover , protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::protein_interface_design::movers::PlacementMinimizationMover , protocols::protein_interface_design::movers::PlaceOnLoop , protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover , protocols::protein_interface_design::movers::SetAtomTree
• hotspot_distcb_weight_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_filenames_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_filter : protocols::flexpep_docking::FlexPepDockingFlags
• hotspot_filter_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hotspot_length() : protocols::hotspot_hashing::HotspotStubSet
• hotspot_length_ : protocols::hotspot_hashing::HotspotStubSet
• hotspot_score_weight_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_stub_set_ : protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover , protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
• hotspotcst_filter_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• HotspotDisjointedFoldTreeMover() : protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover
• HotspotHasherMover() : protocols::protein_interface_design::movers::HotspotHasherMover
• Hotspots : protocols::hotspot_hashing::HotspotStubSet
• HotspotStub() : protocols::hotspot_hashing::HotspotStub , protocols::hotspot_hashing::HotspotStubSet
• HotspotStubSet : protocols::hotspot_hashing::HotspotStub , protocols::hotspot_hashing::HotspotStubSet
• hpairpot_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hpairset() : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hpairset_ : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• hpairset_name_ : protocols::fldsgn::topology::HelixPairingSet
• HPatchCalculator() : protocols::toolbox::pose_metric_calculators::HPatchCalculator
• HPool_RMSD() : protocols::canonical_sampling::mc_convergence_checks::HPool_RMSD
• hs1_dist() : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs1_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs1_orient() : protocols::fldsgn::topology::HSSTriplet
• hs1_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs2_dist() : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs2_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs2_orient() : protocols::fldsgn::topology::HSSTriplet
• hs2_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs_angle() : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• Hs_data : protocols::hotspot_hashing::HotspotStubSet
• hs_dist_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::BetaAlphaBetaMotif
• hs_dist_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• Hs_map : protocols::hotspot_hashing::HotspotStubSet
• hs_pair_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hs_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• Hs_vec : protocols::hotspot_hashing::HotspotStubSet
• hs_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hsheet_dist() : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hsheet_dist_ : protocols::fldsgn::topology::HSSTriplet
• hsheet_dist_repulsive_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hsheet_elev_angle() : protocols::fldsgn::topology::BetaAlphaBetaMotif
• hsheet_elev_angle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• HSPairPotential() : protocols::fldsgn::potentials::sspot::HSPairPotential
• hspot_ : protocols::fldsgn::potentials::SetSecStructEnergies , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• hss3set_ : protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hss_triplet() : protocols::fldsgn::topology::HSSTripletSet
• hss_triplet_set() : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hss_triplets() : protocols::fldsgn::topology::HSSTripletSet , protocols::jd2::parser::BluePrint
• hss_triplets_ : protocols::fldsgn::topology::HSSTripletSet , protocols::jd2::parser::BluePrint
• HSSConstIterator : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• HSSTriplet : protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::topology::HSSTriplet
• HSSTripletFilter() : protocols::fldsgn::filters::HSSTripletFilter
• HSSTripletOP : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• HSSTriplets : protocols::fldsgn::filters::HSSTripletFilter
• HSSTripletSet : protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::topology::HSSTripletSet
• HSSTripletSetOP : protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• HSURFACE : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• ht_for_chitip_atom() : protocols::match::upstream::UpstreamResTypeGeometry
• ht_for_chitip_atoms() : protocols::match::upstream::UpstreamResTypeGeometry
• ht_for_chitip_atoms_ : protocols::match::upstream::UpstreamResTypeGeometry
• HTReal : protocols::match::downstream::ClassicMatchAlgorithm , protocols::match::downstream::DownstreamBuilder , protocols::match::upstream::FullChiSampleSet , protocols::match::upstream::ProteinUpstreamBuilder , protocols::match::upstream::UpstreamResTypeGeometry , protocols::toolbox::match_enzdes_util::ExternalGeomSampler , protocols::toolbox::match_enzdes_util::LigandConformer , protocols::toolbox::match_enzdes_util::MatchConstraintFileInfo
• hurry() : protocols::protein_interface_design::movers::LoopRemodel , protocols::symmetric_docking::SymDockProtocol
• hurry_ : protocols::protein_interface_design::movers::LoopRemodel , protocols::protein_interface_design::movers::PlaceStubMover , protocols::symmetric_docking::SymDockProtocol
• hybridize() : protocols::seeded_abinitio::SegmentHybridizer
• hybridize_setup_ : protocols::hybridization::CartesianHybridize , protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeSetupMover
• HybridizeFoldtreeDynamic() : protocols::hybridization::HybridizeFoldtreeDynamic
• HybridizeProtocol() : protocols::hybridization::HybridizeProtocol
• HybridizeSetup() : protocols::hybridization::HybridizeSetup
• HybridizeSetupMover() : protocols::hybridization::HybridizeSetupMover
• hydrophobic_ : protocols::simple_filters::InterfaceSasaFilter , protocols::simple_filters::TotalSasaFilter
• hydrophobic_residues_ : protocols::denovo_design::filters::ExposedHydrophobicsFilter
• HydrophobicityProfileSimilarity() : protocols::frag_picker::scores::HydrophobicityProfileSimilarity
• HydrophobicitySimilarity() : protocols::frag_picker::scores::HydrophobicitySimilarity