Here is a list of all class members with links to the classes they belong to:
- w -
- w
: protocols::simple_filters::Quat
- W2I_1
: protocols::sparta::ANN
- W2I_2
: protocols::sparta::ANN
- W2I_3
: protocols::sparta::ANN
- W2L1_1
: protocols::sparta::ANN
- W2L1_2
: protocols::sparta::ANN
- W2L1_3
: protocols::sparta::ANN
- W2L2_1
: protocols::sparta::ANN
- W2L2_2
: protocols::sparta::ANN
- W2L2_3
: protocols::sparta::ANN
- wait_for_remote_vars()
: protocols::optimize_weights::OptEMultifunc
- wait_semaphore()
: protocols::boinc::Boinc
- wait_time()
: protocols::wum2::WorkUnit_Wait
- wait_time_
: protocols::wum2::WorkUnit_Wait
- waiting_on_dependencies()
: protocols::forge::build::BuildInstruction
- WalkingBondAnglePerturber()
: protocols::kinematic_closure::perturbers::WalkingBondAnglePerturber
- WalkingPerturber()
: protocols::kinematic_closure::perturbers::WalkingPerturber
- wall_time()
: protocols::wum::MPI_WorkUnitManager
- was_modified()
: protocols::frag_picker::scores::FragmentScoreMap
- was_modified_
: protocols::frag_picker::scores::FragmentScoreMap
- was_successful()
: protocols::loop_modeling::LoopMover
- was_successful_
: protocols::loop_modeling::LoopMover
- WaterFeatures()
: protocols::features::WaterFeatures
- WaterFeaturesCreator()
: protocols::features::WaterFeaturesCreator
- weight()
: protocols::abinitio::PairingStatEntry
, protocols::abinitio::PairingStatistics
, protocols::antibody::design::CDRGraftDesignOptions
, protocols::md::MDscheduleData
, protocols::simple_moves::MSDMover
, protocols::simple_moves::symmetry::SetupNCSMover
, protocols::topology_broker::weights::AbinitioMoverWeight
, protocols::topology_broker::weights::ConstAbinitioMoverWeight
, protocols::topology_broker::weights::LargeFragWeight
, protocols::topology_broker::weights::SmallFragWeight
, protocols::topology_broker::weights::SmoothFragWeight
- weight_
: protocols::abinitio::PairingStatEntry
, protocols::cryst::SetCrystWeightMover
, protocols::fldsgn::potentials::SetAACompositionPotential
, protocols::fldsgn::SheetConstraintsRCG
, protocols::jumping::JumpSelector::JumpWeightDef
, protocols::moves::MoverContainer
, protocols::pockets::PocketConstraint
, protocols::rbsegment_relax::OptimizeThreadingMover
, protocols::scoring::methods::pcs2::PcsDataLanthanide
, protocols::scoring::methods::pcs2::PcsInputFile
, protocols::scoring::methods::pcs::PCS_data_per_lanthanides
, protocols::scoring::methods::pcs::PCS_file_data
, protocols::scoring::methods::pcsTs1::PCS_data_per_lanthanides_Ts1
, protocols::scoring::methods::pcsTs1::PCS_file_data_Ts1
, protocols::scoring::methods::pcsTs2::PCS_data_per_lanthanides_Ts2
, protocols::scoring::methods::pcsTs2::PCS_file_data_Ts2
, protocols::scoring::methods::pcsTs3::PCS_data_per_lanthanides_Ts3
, protocols::scoring::methods::pcsTs3::PCS_file_data_Ts3
, protocols::scoring::methods::pcsTs4::PCS_data_per_lanthanides_Ts4
, protocols::scoring::methods::pcsTs4::PCS_file_data_Ts4
, protocols::simple_moves::FavorSequenceProfile
, protocols::simple_moves::MSDMover
, protocols::topology_broker::weights::ConstAbinitioMoverWeight
, protocols::topology_broker::weights::LargeFragWeight
, protocols::topology_broker::weights::SmallFragWeight
, protocols::topology_broker::weights::SmoothFragWeight
- weight_factor_
: protocols::toolbox::IGLigandDesignEdgeUpweighter
, protocols::toolbox::ResidueGroupIGEdgeUpweighter
- weight_map()
: protocols::toolbox::pose_metric_calculators::EnergiesData
- weight_map_
: protocols::toolbox::pose_metric_calculators::EnergiesData
- weight_min_
: protocols::cryst::SetCrystWeightMover
- weight_scale_
: protocols::cryst::SetCrystWeightMover
- WEIGHT_Tab
: protocols::sparta::Sparta::SpartaLib
- weighted_average()
: protocols::mpi_refinement::StructAvrgMover
- weighted_counts_
: protocols::canonical_sampling::SimulatedTempering
- weighted_energy_map()
: protocols::toolbox::pose_metric_calculators::EnergiesData
- weighted_energy_map_vector()
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- weighted_sampler_
: protocols::canonical_sampling::MetropolisHastingsMover
, protocols::hybridization::WeightedFragmentSmoothTrialMover
, protocols::hybridization::WeightedFragmentTrialMover
- weighted_total()
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
, protocols::toolbox::pose_metric_calculators::EnergiesData
- weighted_total_
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- weighted_total_no_master()
: protocols::toolbox::pose_metric_calculators::EnergiesData
- weighted_total_no_master_vector()
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- weighted_total_vector()
: protocols::toolbox::pose_metric_calculators::DecomposeAndReweightEnergiesCalculator
- WeightedFragmentSmoothTrialMover()
: protocols::hybridization::WeightedFragmentSmoothTrialMover
- WeightedFragmentTrialMover()
: protocols::hybridization::WeightedFragmentTrialMover
- weightFileName
: protocols::sparta::Sparta::SpartaLib
- WeightMap
: protocols::jd2::archive::EvaluatedArchive
- WeightRangeConstraint()
: protocols::optimize_weights::WeightRangeConstraint
- Weights
: protocols::abinitio::PairingStatistics
- weights()
: protocols::jd2::archive::EvaluatedArchive
, protocols::moves::MoverContainer
- weights_
: protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD
, protocols::canonical_sampling::SimulatedTempering
, protocols::filters::IfThenFilter
, protocols::frag_picker::CompareByScoreCombination
, protocols::frag_picker::DiversifyCrmsdByClustering
, protocols::frag_picker::DiversifyCrmsdSelector
, protocols::frag_picker::quota::ABEGO_SS_Pool
, protocols::frag_picker::quota::SecondaryStructurePool
, protocols::frag_picker::scores::FragmentAllAtomCrmsd
, protocols::frag_picker::scores::FragmentChunkCrms
, protocols::frag_picker::scores::FragmentCrmsd
, protocols::frag_picker::scores::FragmentCrmsdResDepth
, protocols::frag_picker::scores::FragmentDME
, protocols::moves::SimulatedTempering
, protocols::sic_dock::CBScore
, protocols::sic_dock::JointScore
, protocols::stepwise::sampler::StepWiseSamplerAny
, protocols::toolbox::DecoySetEvaluation
- weights_to_scan_
: protocols::electron_density::BfactorFittingMover
- wfa_atr()
: protocols::match::output::MatchCollisionFilter
- wfa_atr_
: protocols::match::output::MatchCollisionFilter
- wfa_rep()
: protocols::match::output::MatchCollisionFilter
- wfa_rep_
: protocols::match::output::MatchCollisionFilter
- wfa_sol()
: protocols::match::output::MatchCollisionFilter
- wfa_sol_
: protocols::match::output::MatchCollisionFilter
- whatIsTooSmall()
: protocols::pockets::PocketGrid
- where_is_line()
: protocols::scoring::methods::pcs2::PcsDataCenter
, protocols::scoring::methods::pcs::PCS_data
, protocols::scoring::methods::pcsTs1::PCS_data_Ts1
, protocols::scoring::methods::pcsTs2::PCS_data_Ts2
, protocols::scoring::methods::pcsTs3::PCS_data_Ts3
, protocols::scoring::methods::pcsTs4::PCS_data_Ts4
- which_chain()
: protocols::fldsgn::CircularPermutation
, protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
- which_cst_being_processed_
: protocols::match::output::UpstreamHitCacher
- which_geom_cst_
: protocols::match::TaskOperationMPM
- which_jump_
: protocols::stepwise::sampler::JumpStepWiseSampler
- which_point_for_atom()
: protocols::match::upstream::UpstreamResTypeGeometry
- which_point_for_atom_
: protocols::match::upstream::UpstreamResTypeGeometry
- which_residue_alternative_set_is_moving_residue()
: protocols::stepwise::modeler::StepWiseConnectionSampler
- which_scratch_res_is_cut_
: protocols::coarse_rna::CoarseRNA_LoopCloser
- which_sheet()
: protocols::fldsgn::topology::SheetSet
- which_side()
: protocols::fldsgn::topology::Sheet
- which_top_entity()
: protocols::pack_daemon::MultistateFitnessFunction
- which_torsions()
: protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer
, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser
, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
, protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler
- which_torsions_
: protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer
, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
, protocols::stepwise::sampler::protein::ProteinMainChainStepWiseSampler
- WhileMover()
: protocols::moves::WhileMover
- whoami()
: protocols::toolbox::GreedyKCenter
, protocols::toolbox::KCluster
, protocols::toolbox::KMedoid
- whole_interface_
: protocols::simple_filters::EnergyPerResidueFilter
, protocols::simple_filters::ResidueIEFilter
- whole_pose_
: protocols::enzdes::EnzScoreFilter
, protocols::simple_filters::ResidueIEFilter
- whole_protein_
: protocols::simple_filters::EnergyPerResidueFilter
- whole_struct_cluster_radius_
: protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
- WholeBodyRotationMover()
: protocols::rigid::WholeBodyRotationMover
- WholeBodyTranslationMover()
: protocols::rigid::WholeBodyTranslationMover
- WholeStructureMoveSet_
: protocols::rbsegment_relax::RBSegmentRelax
- WI_1
: protocols::sparta::ANN
- WI_2
: protocols::sparta::ANN
- WI_3
: protocols::sparta::ANN
- widget_name()
: protocols::genetic_algorithm::EntityElementCreator
, protocols::multistate_design::PosTypeCreator
- width_
: protocols::frag_picker::scores::FragmentScoreManager
, protocols::membrane::visualize::VisualizeMembraneMover
, protocols::qsar::scoring_grid::GridManager
, protocols::viewer::ConformationViewer
- WidthFirstSlidingWindowLoopClosure()
: protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
- wiggle_cdr_h3_
: protocols::antibody::H3RefineCCD
- wind_down_simulation()
: protocols::canonical_sampling::MetropolisHastingsMover
- window()
: protocols::viewer::ConformationViewer
- window_
: protocols::cryst::LoadDensityMapMover
, protocols::noesy_assign::FoldResonance
- window_acceptance_ratio_
: protocols::loops::loop_closure::ccd::WidthFirstSlidingWindowLoopClosure
- WINDOW_SIZE
: protocols::ss_prediction::SS_predictor
- window_size_
: protocols::loophash::LoopHashDiversifier
- WindowList
: protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
- winning_address_
: protocols::canonical_sampling::mc_convergence_checks::DataBuffer
- winning_ranks_
: protocols::canonical_sampling::mc_convergence_checks::DataBuffer
, protocols::canonical_sampling::mc_convergence_checks::TransferBuffer
- winning_tag_
: protocols::canonical_sampling::mc_convergence_checks::DataBuffer
- wipe_out_moving_residues()
: protocols::stepwise::monte_carlo::mover::DeleteMover
- within_reach()
: protocols::match::HitNeighborFinder
- without_my_constraints()
: protocols::ligand_docking::ResidueTorsionRestraints
- WL1_1
: protocols::sparta::ANN
- WL1_2
: protocols::sparta::ANN
- WL1_3
: protocols::sparta::ANN
- WL2_1
: protocols::sparta::ANN
- WL2_2
: protocols::sparta::ANN
- WL2_3
: protocols::sparta::ANN
- WobbleMover()
: protocols::simple_moves::WobbleMover
- work_dir_
: protocols::simple_filters::ExternalEvaluator
- work_unit_list()
: protocols::wum::WorkUnitManager
- work_unit_list_
: protocols::wum::WorkUnitList
, protocols::wum::WorkUnitManager
- worker_finish_summary()
: protocols::boinc::Boinc
- worker_initialized_
: protocols::boinc::Boinc
- worker_is_finished()
: protocols::boinc::Boinc
- worker_running_
: protocols::boinc::Boinc
- worker_shutdown()
: protocols::boinc::Boinc
- worker_startup()
: protocols::boinc::Boinc
- workers_finished()
: protocols::canonical_sampling::mc_convergence_checks::MPIBPool_RMSD
- workers_finished_
: protocols::canonical_sampling::mc_convergence_checks::MPIBPool_RMSD
- working_align_pose_
: protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
- working_align_res
: protocols::stepwise::modeler::rna::checker::VDW_RepScreeninfo
- working_best_alignment()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_best_alignment_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_bridge_res()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_bridge_res_
: protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer
, protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
, protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_calc_rms_res()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_calc_rms_res_
: protocols::stepwise::modeler::StepWiseMinimizer
, protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_extra_minimize_res_
: protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
- working_fixed_res()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_fixed_res_
: protocols::stepwise::modeler::StepWiseMinimizer
, protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_floating_base_anchor_res()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_force_north_sugar_list()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_force_north_sugar_list_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_force_south_sugar_list()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_force_south_sugar_list_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_force_syn_chi_res_list()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_force_syn_chi_res_list_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_global_sample_res_list()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_global_sample_res_list_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_minimize_res_
: protocols::stepwise::modeler::StepWiseModeler
- working_model_
: protocols::forge::remodel::RemodelAccumulator
, protocols::forge::remodel::RemodelDesignMover
, protocols::forge::remodel::RemodelGlobalFrame
, protocols::forge::remodel::RemodelMover
- working_moving_partition_res()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_partition_res_
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_res()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_res_
: protocols::stepwise::modeler::StepWiseMinimizer
, protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_res_list()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_res_list_
: protocols::stepwise::modeler::packer::StepWisePacker
, protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_suite()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_suite_
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_suite_list()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_moving_suite_list_
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_native_alignment()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_native_alignment_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_native_pose
: protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
, protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_native_pose_
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_pack_res()
: protocols::stepwise::modeler::packer::StepWiseMasterPacker
- working_pack_res_
: protocols::stepwise::modeler::packer::StepWiseMasterPacker
, protocols::stepwise::modeler::packer::StepWisePacker
, protocols::stepwise::modeler::StepWiseMinimizer
- working_pack_res_was_inputted()
: protocols::stepwise::modeler::packer::StepWisePacker
- working_pack_res_was_inputted_
: protocols::stepwise::modeler::packer::StepWisePacker
- working_parameters()
: protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
, protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup
, protocols::stepwise::modeler::StepWiseModeler
- working_parameters_
: protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSelection
, protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetup
, protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup
, protocols::stepwise::modeler::packer::StepWiseMasterPacker
, protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler
, protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
, protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
, protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarJustInTimeInstantiator
, protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarSampler
, protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarSamplerFromStringList
, protocols::stepwise::modeler::StepWiseConnectionSampler
, protocols::stepwise::modeler::StepWiseModeler
- working_parameters_exist_
: protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
- working_prepack_res_
: protocols::stepwise::modeler::StepWiseModeler
- working_protonated_H1_adenosine_list()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_protonated_H1_adenosine_list_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_reference_res()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_res_list()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_sequence()
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_sequence_
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_set_size_
: protocols::boinc::Boinc
- working_set_size_max_val_
: protocols::boinc::Boinc
- working_superimpose_res()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_superimpose_res_
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_terminal_res()
: protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
- working_terminal_res_
: protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
- working_to_sliced_res_map_
: protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters
- workingSetGen()
: protocols::forge::remodel::RemodelWorkingSet
- WorkUnit()
: protocols::wum2::WorkUnit
- WorkUnit_BatchRelax()
: protocols::relax::WorkUnit_BatchRelax
- WorkUnit_BatchRelax_and_PostRescore()
: protocols::relax::WorkUnit_BatchRelax_and_PostRescore
- WorkUnit_bbGauss()
: protocols::mpi_refinement::WorkUnit_bbGauss
- WorkUnit_CombinePose()
: protocols::mpi_refinement::WorkUnit_CombinePose
- WorkUnit_ElScripts()
: protocols::wum2::WorkUnit_ElScripts
- WorkUnit_FragInsert()
: protocols::mpi_refinement::WorkUnit_FragInsert
- WorkUnit_KicCloser()
: protocols::mpi_refinement::WorkUnit_KicCloser
- WorkUnit_LoopHash()
: protocols::loophash::WorkUnit_LoopHash
, protocols::mpi_refinement::WorkUnit_LoopHash
- WorkUnit_MD()
: protocols::mpi_refinement::WorkUnit_MD
- WorkUnit_MoverWrapper()
: protocols::wum::WorkUnit_MoverWrapper
- WorkUnit_NormalMode()
: protocols::mpi_refinement::WorkUnit_NormalMode
- WorkUnit_PartialAbinitio()
: protocols::mpi_refinement::WorkUnit_PartialAbinitio
- WorkUnit_RamaPerturber()
: protocols::mpi_refinement::WorkUnit_RamaPerturber
- WorkUnit_Relax()
: protocols::mpi_refinement::WorkUnit_Relax
- WorkUnit_Sampler()
: protocols::mpi_refinement::WorkUnit_Sampler
- WorkUnit_SilentStructStore()
: protocols::wum::WorkUnit_SilentStructStore
- WorkUnit_Wait()
: protocols::wum2::WorkUnit_Wait
, protocols::wum::WorkUnit_Wait
- WorkUnitBase()
: protocols::wum::WorkUnitBase
- WorkUnitList()
: protocols::wum::WorkUnitList
- WorkUnitManager
: protocols::wum::WorkUnitBase
, protocols::wum::WorkUnitManager
- WorkUnitQueue
: protocols::wum::WorkUnitBase
, protocols::wum::WorkUnitQueue
- WorkUnitQueue_Swapped
: protocols::wum::WorkUnitManager
, protocols::wum::WorkUnitQueue_Swapped
- worst_
: protocols::frag_picker::LazySortedVector1< T, StrictWeakOrdering >
- worst_allowed_stub_bonus_
: protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover
, protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
- worst_combine_score_
: protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
- wrap_dof_id()
: protocols::environment::claims::EnvClaim
, protocols::environment::claims::TorsionClaim
, protocols::environment::claims::XYZClaim
- wrapped_opt_min_
: protocols::optimize_weights::IterativeOptEDriver
- wrapped_phipsi_bins_
: protocols::match::VoxelSetIterator
- wrapped_phipsi_halfbins_
: protocols::match::VoxelSetIterator
- WrappedOptEExpressionCreator()
: protocols::optimize_weights::WrappedOptEExpressionCreator
- WrapperOptEMultifunc()
: protocols::optimize_weights::WrapperOptEMultifunc
- write()
: protocols::abinitio::abscript::JumpSampleData
, protocols::environment::AutoCutData
, protocols::frag_picker::CSTalosIO
, protocols::frag_picker::LAMBEGO_IO
, protocols::frag_picker::PhiPsiTalosIO
, protocols::frag_picker::TorsionBinIO
, protocols::matdes::ClashCheckFilter
, protocols::outputter::FormatStringOutputter
, protocols::outputter::Outputter
, protocols::outputter::PDBOutputter
, protocols::outputter::ResFileOutputter
, protocols::outputter::SilentFileOutputter
- write2pdb()
: protocols::matdes::OligomericAverageDegreeFilter
, protocols::matdes::SymUnsatHbondFilter
, protocols::protein_interface_design::filters::SequenceRecoveryFilter
, protocols::simple_filters::DdGScan
, protocols::simple_filters::MutationsFilter
, protocols::simple_filters::RotamerBoltzmannWeight
, protocols::simple_filters::TaskAwareScoreTypeFilter
- write2pdb_
: protocols::matdes::OligomericAverageDegreeFilter
, protocols::matdes::SymUnsatHbondFilter
, protocols::protein_interface_design::filters::SequenceRecoveryFilter
, protocols::simple_filters::DdGScan
, protocols::simple_filters::MutationsFilter
, protocols::simple_filters::RotamerBoltzmannWeight
, protocols::simple_filters::TaskAwareScoreTypeFilter
- write_
: protocols::matdes::ClashCheckFilter
- write_3Dprojection_kinemage()
: protocols::match::OccupiedSpaceHash
- write_AA_kind_files_
: protocols::features::strand_assembly::SandwichFeatures
- write_ab_H3_kink_metrics_schema_to_db()
: protocols::antibody::AntibodyFeatures
- write_ab_metrics_schema_to_db()
: protocols::antibody::AntibodyFeatures
- write_all()
: protocols::hotspot_hashing::HotspotStubSet
- write_all_info_files_
: protocols::features::strand_assembly::SandwichFeatures
- write_all_structs()
: protocols::jd2::SilentFileJobOutputter
- write_assignment()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
- write_assignment_indent()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
- write_assignment_stats()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
- write_assignments()
: protocols::noesy_assign::NoesyModule
, protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Base
- write_atom_in_residue_pairs_table_schema()
: protocols::features::AtomInResidueAtomInResiduePairFeatures
- write_atom_names()
: protocols::noesy_assign::PeakFileFormat
- write_atom_names_
: protocols::noesy_assign::PeakFileFormat
- write_atom_pairs_table_schema()
: protocols::features::AtomAtomPairFeatures
- write_beta_sheet_capping_info_
: protocols::features::strand_assembly::SandwichFeatures
- write_beta_turns_table_schema()
: protocols::features::BetaTurnDetectionFeatures
- write_bond_interres_angles_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_interres_lengths_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_intrares_angles_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_intrares_lengths_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_bond_intrares_torsions_table_schema()
: protocols::features::ProteinBondGeometryFeatures
- write_cache_to_db()
: protocols::canonical_sampling::DbTrajectoryRecorder
, protocols::trajectory::DbTrajectoryWriter
- write_cdr_metrics_schema_to_db()
: protocols::antibody::AntibodyFeatures
- write_cdr_residue_schema_to_db()
: protocols::antibody::AntibodyFeatures
- write_chain_B_resnum_
: protocols::features::strand_assembly::SandwichFeatures
- write_checkpoint()
: protocols::canonical_sampling::MetropolisHastingsMover
, protocols::forge::remodel::RemodelAccumulator
, protocols::frag_picker::nonlocal::NonlocalFrags
, protocols::genetic_algorithm::Entity
, protocols::multistate_design::MultiStateEntity< T >
, protocols::multistate_design::SingleStateEntityData
- write_colors()
: protocols::qsar::RenderGridsToKinemage
- write_connollySurface_to_pdb()
: protocols::pockets::ElectrostaticpotentialGrid
- write_current_state_to_state_array()
: protocols::flexpack::interaction_graph::FlexbbNode
- write_data()
: protocols::toolbox::match_enzdes_util::CstResInteractions
, protocols::toolbox::match_enzdes_util::ResInteractions
- write_database()
: protocols::branch_angle::BranchAngleOptimizer
- write_db()
: protocols::loophash::BackboneDB
, protocols::loophash::LoopHashMap
- write_ddG_table_schema()
: protocols::features::DdGFeatures
- write_decoys_to_hierarchy()
: protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
- write_downstream_coordinates()
: protocols::match::output::DownstreamCoordinateKinemageWriter
, protocols::match::output::SingleDownstreamResidueWriter
- write_dynamic_rsr_
: protocols::md::MDBase
- write_eggshell_to_pdb()
: protocols::pockets::EggshellGrid
- write_eggshell_to_pdb_file()
: protocols::pockets::NonPlaidFingerprint
- write_electrostatic_interactions_of_all_residues_
: protocols::features::strand_assembly::SandwichFeatures
- write_electrostatic_interactions_of_all_residues_in_a_strand_
: protocols::features::strand_assembly::SandwichFeatures
- write_electrostatic_interactions_of_surface_residues_in_a_strand_
: protocols::features::strand_assembly::SandwichFeatures
- write_empty_voxels_
: protocols::match::Bool3DGridKinemageWriter
- write_entities_checkpoint()
: protocols::genetic_algorithm::GeneticAlgorithmBase
- write_espGrid_to_pdb()
: protocols::pockets::ElectrostaticpotentialGrid
- write_facets_
: protocols::match::Bool3DGridKinemageWriter
- write_file_
: protocols::match::output::MatchScoreWriter
- write_full_report()
: protocols::features::ProteinSilentReport
- write_generations_checkpoint()
: protocols::genetic_algorithm::GeneticAlgorithmBase
- write_geometric_solvation_table_schema()
: protocols::features::GeometricSolvationFeatures
- write_grid_to_file()
: protocols::match::Bool3DGridKinemageWriter
- write_grid_to_kinemage()
: protocols::match::Bool3DGridKinemageWriter
- write_Grid_to_pdb()
: protocols::pockets::EggshellGrid
- write_grids()
: protocols::qsar::scoring_grid::GridManager
- write_HARO_orbital_table_schema()
: protocols::features::OrbitalsFeatures
- write_hbond_chem_types_table_schema()
: protocols::features::HBondFeatures
- write_hbond_dehydrons_table_schema()
: protocols::features::HBondFeatures
- write_hbond_geom_coords_table_schema()
: protocols::features::HBondFeatures
- write_hbond_lennard_jones_table_schema()
: protocols::features::HBondFeatures
- write_hbond_site_atoms_table_schema()
: protocols::features::HBondFeatures
- write_hbond_site_environment_table_schema()
: protocols::features::HBondFeatures
- write_hbond_sites_pdb_table_schema()
: protocols::features::HBondFeatures
- write_hbond_sites_table_schema()
: protocols::features::HBondFeatures
- write_hbonds_table_schema()
: protocols::features::HBondFeatures
- write_header()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Base
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
, protocols::qsar::RenderGridsToKinemage
, protocols::rotamer_recovery::RRReporterHuman
- write_headers_to_hierarchy()
: protocols::canonical_sampling::mc_convergence_checks::HierarchicalLevel
, protocols::canonical_sampling::mc_convergence_checks::MPIHPool_RMSD
- write_heading_directions_of_all_AA_in_a_strand_
: protocols::features::strand_assembly::SandwichFeatures
- write_hist_to_file()
: protocols::noesy_assign::FragsToAtomDist
- write_hist_to_stream()
: protocols::noesy_assign::FragsToAtomDist
- write_HPOL_orbital_table_schema()
: protocols::features::OrbitalsFeatures
- write_info_file()
: protocols::jd2::archive::Batch
- write_int_area()
: protocols::simple_filters::ShapeComplementarityFilter
- write_int_area_
: protocols::simple_filters::ShapeComplementarityFilter
- write_interface_residue_data_row_to_db()
: protocols::features::InterfaceFeatures
- write_interface_residues_schema_to_db()
: protocols::features::InterfaceFeatures
- write_interface_schema_to_db()
: protocols::features::InterfaceFeatures
- write_interface_side_schema_to_db()
: protocols::features::InterfaceFeatures
- write_lines()
: protocols::jd2::SingleFileBuffer
, protocols::jd2::WriteFileSFB
- write_loop_AA_distribution_files_
: protocols::features::strand_assembly::SandwichFeatures
- write_loop_anchor_transforms_table_schema()
: protocols::features::LoopAnchorFeatures
- write_loop_anchor_transforms_three_res_table_schema()
: protocols::features::LoopAnchorFeatures
- write_loop_anchors_table_schema()
: protocols::features::LoopAnchorFeatures
- write_loops_to_file()
: protocols::loops::Loops
- write_loops_to_stream()
: protocols::loops::Loops
- write_match_groups()
: protocols::match::output::CloudPDBWriter
- write_match_scores()
: protocols::match::output::MatchScoreWriter
- write_matchres_only_
: protocols::match::output::PDBWriter
- write_model()
: protocols::canonical_sampling::DbTrajectoryRecorder
, protocols::canonical_sampling::PDBTrajectoryRecorder
, protocols::canonical_sampling::SilentTrajectoryRecorder
, protocols::canonical_sampling::TrajectoryRecorder
- write_mse_summary()
: protocols::simple_moves::DOFHistogramRecorder
- write_nchi_table_schema()
: protocols::rotamer_recovery::RRReporterSQLite
- write_new_scorefile()
: protocols::optimize_weights::IterativeOptEDriver
- write_nil_assignment()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
- write_only_highest_VC()
: protocols::noesy_assign::PeakFileFormat_Base
- write_only_highest_VC_
: protocols::noesy_assign::PeakFileFormat_Base
- write_orbital_orbital_table_schema()
: protocols::features::OrbitalsFeatures
- write_out_round_silent_file()
: protocols::stepwise::setup::StepWiseCSA_JobDistributor
- write_out_silent_file()
: protocols::stepwise::setup::StepWiseCSA_JobDistributor
- write_output_from_job()
: protocols::jd2::JobDistributor
- write_p_aa_pp_files_
: protocols::features::strand_assembly::SandwichFeatures
- write_parameters_to_std_out()
: protocols::optimize_weights::IterativeOptEDriver
- write_peak()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Base
, protocols::noesy_assign::PeakFileFormat_Sparky
, protocols::noesy_assign::PeakFileFormat_xpk
- write_peak_files()
: protocols::noesy_assign::CrossPeakList
- write_phi_psi_of_all_
: protocols::features::strand_assembly::SandwichFeatures
- write_phi_psi_of_E_
: protocols::features::strand_assembly::SandwichFeatures
- write_pocketGrid_to_pdb()
: protocols::pockets::PocketGrid
- write_points()
: protocols::qsar::RenderGridsToKinemage
- write_predicted_features_table_schema()
: protocols::rotamer_recovery::RRReporterSQLite
- write_protein_backbone_atom_atom_pairs_table_schema()
: protocols::features::ProteinBackboneAtomAtomPairFeatures
- write_protein_backbone_torsion_angles_table_schema()
: protocols::features::ProteinBackboneTorsionAngleFeatures
- write_protein_rmsd_table_schema()
: protocols::features::ProteinRMSDFeatures
, protocols::features::ProteinRMSDNoSuperpositionFeatures
- write_protocol_report()
: protocols::features::ProteinSilentReport
- write_pymol_script()
: protocols::flxbb::LayerDesignOperation
- write_pymol_string_to_pdb()
: protocols::matdes::ClashCheckFilter
, protocols::matdes::SymUnsatHbondFilter
- write_queue()
: protocols::wum::WorkUnitManager
- write_queues_to_file()
: protocols::wum::WorkUnitManager
- write_radius_of_gyration_table_schema()
: protocols::features::RadiusOfGyrationFeatures
- write_rama_at_AA_to_files_
: protocols::features::strand_assembly::SandwichFeatures
- write_report()
: protocols::helical_bundle::PerturbBundle
- write_resfile()
: protocols::simple_filters::SaveResfileToDiskFilter
- write_resfile_
: protocols::features::strand_assembly::SandwichFeatures
- write_resfile_NOT_FWY_on_surface_
: protocols::features::strand_assembly::SandwichFeatures
- write_resfile_to_minimize_too_many_core_heading_FWY_on_core_strands_
: protocols::features::strand_assembly::SandwichFeatures
- write_resfile_to_minimize_too_many_core_heading_FWY_on_edge_strands_
: protocols::features::strand_assembly::SandwichFeatures
- write_resfile_to_minimize_too_much_hydrophobic_surface_
: protocols::features::strand_assembly::SandwichFeatures
- write_resfile_when_seq_rec_is_bad_
: protocols::features::strand_assembly::SandwichFeatures
- write_residue_burial_table_schema()
: protocols::features::ResidueBurialFeatures
- write_residue_pairs_table_schema()
: protocols::features::PairFeatures
- write_residue_rotamers_table_schema()
: protocols::features::RotamerFeatures
- write_residue_scores_1b_table_schema()
: protocols::features::ResidueScoresFeatures
- write_residue_scores_2b_table_schema()
: protocols::features::ResidueScoresFeatures
- write_residue_scores_lr_2b_table_schema()
: protocols::features::ResidueScoresFeatures
- write_residue_total_scores_table_schema()
: protocols::features::ResidueTotalScoresFeatures
- write_resonances()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Base
- write_rotamer_boltzmann_weight_table_schema()
: protocols::features::RotamerBoltzmannWeightFeatures
- write_rotamer_recovery_features_table_schema()
: protocols::rotamer_recovery::RRReporterSQLite
- write_rotamer_recovery_full_table_schema()
: protocols::rotamer_recovery::RRReporterSQLite
- write_rsd_coords()
: protocols::match::output::ResidueKinemageWriter
- write_salt_bridges_table_schema()
: protocols::features::SaltBridgeFeatures
- write_schema_to_db()
: protocols::antibody::AntibodyFeatures
, protocols::antibody::clusters::CDRClusterFeatures
, protocols::canonical_sampling::DbTrajectoryRecorder
, protocols::features::AtomAtomPairFeatures
, protocols::features::AtomInResidueAtomInResiduePairFeatures
, protocols::features::AtomTypesFeatures
, protocols::features::BatchFeatures
, protocols::features::BetaTurnDetectionFeatures
, protocols::features::ChargeChargeFeatures
, protocols::features::DdGFeatures
, protocols::features::FeaturesReporter
, protocols::features::GeometricSolvationFeatures
, protocols::features::HBondFeatures
, protocols::features::HBondParameterFeatures
, protocols::features::helixAssembly::ConcurrencyTest
, protocols::features::helixAssembly::HelixBundleFeatures
, protocols::features::HelixCapFeatures
, protocols::features::InterfaceFeatures
, protocols::features::JobDataFeatures
, protocols::features::LoopAnchorFeatures
, protocols::features::OrbitalsFeatures
, protocols::features::PairFeatures
, protocols::features::PdbDataFeatures
, protocols::features::PoseCommentsFeatures
, protocols::features::PoseConformationFeatures
, protocols::features::ProteinBackboneAtomAtomPairFeatures
, protocols::features::ProteinBackboneTorsionAngleFeatures
, protocols::features::ProteinBondGeometryFeatures
, protocols::features::ProteinResidueConformationFeatures
, protocols::features::ProteinRMSDFeatures
, protocols::features::ProteinRMSDNoSuperpositionFeatures
, protocols::features::ProteinSilentReport
, protocols::features::ProtocolFeatures
, protocols::features::RadiusOfGyrationFeatures
, protocols::features::ResidueBurialFeatures
, protocols::features::ResidueConformationFeatures
, protocols::features::ResidueFeatures
, protocols::features::ResidueGridScoresFeatures
, protocols::features::ResidueScoresFeatures
, protocols::features::ResidueSecondaryStructureFeatures
, protocols::features::ResidueTotalScoresFeatures
, protocols::features::ResidueTypesFeatures
, protocols::features::RotamerBoltzmannWeightFeatures
, protocols::features::RotamerFeatures
, protocols::features::RotamerRecoveryFeatures
, protocols::features::RuntimeFeatures
, protocols::features::SaltBridgeFeatures
, protocols::features::ScoreFunctionFeatures
, protocols::features::ScoreTypeFeatures
, protocols::features::ScreeningFeatures
, protocols::features::SecondaryStructureSegmentFeatures
, protocols::features::SmotifFeatures
, protocols::features::strand_assembly::SandwichFeatures
, protocols::features::strand_assembly::StrandBundleFeatures
, protocols::features::StructureFeatures
, protocols::features::StructureScoresFeatures
, protocols::features::TaskOperationFeatures
, protocols::features::TotalScoreFeatures
, protocols::features::TrajectoryMapFeatures
, protocols::features::UnrecognizedAtomFeatures
, protocols::features::WaterFeatures
, protocols::rotamer_recovery::RRReporterSQLite
, protocols::trajectory::DbTrajectoryWriter
- write_score_function_weights_table_schema()
: protocols::features::ScoreFunctionFeatures
- write_scorefile()
: protocols::jd2::FileJobOutputter
- write_scorefile_
: protocols::jd2::FileJobOutputter
- write_separate_scorefile_
: protocols::jd2::SilentFileJobOutputter
- write_strand_AA_distribution_files_
: protocols::features::strand_assembly::SandwichFeatures
- write_strength()
: protocols::noesy_assign::PeakFileFormat
, protocols::noesy_assign::PeakFileFormat_Base
- write_stub()
: protocols::hotspot_hashing::HotspotStubSet
- write_summary()
: protocols::frag_picker::QuotaDebug
- write_talos_format()
: protocols::noesy_assign::ResonanceList
- write_task_operation_residue_effects_table_schema()
: protocols::features::TaskOperationFeatures
- write_task_operations_table_schema()
: protocols::features::TaskOperationFeatures
- write_to_binary_file()
: protocols::optimize_weights::ConstraintedOptimizationWeightFunc
, protocols::optimize_weights::DDGBindOptEData
, protocols::optimize_weights::DDGMutationOptEData
, protocols::optimize_weights::DGBindOptEData
, protocols::optimize_weights::NestedEnergyTermPNatAAOptEPositionData
, protocols::optimize_weights::OptEData
, protocols::optimize_weights::OptEPositionData
, protocols::optimize_weights::PNatAAOptEPositionData
, protocols::optimize_weights::PNatRotOptEPositionData
, protocols::optimize_weights::PNatStructureOptEData
, protocols::optimize_weights::PSSMOptEPositionData
- write_to_file()
: protocols::canonical_sampling::MultiTemperatureTrialCounter
, protocols::canonical_sampling::SimulatedTempering
, protocols::canonical_sampling::TemperingBase
, protocols::contact_map::ContactMap
, protocols::noesy_assign::FragsToAtomDist
, protocols::optimize_weights::ConstraintedOptimizationWeightFunc
, protocols::optimize_weights::DDGBindOptEData
, protocols::optimize_weights::DDGMutationOptEData
, protocols::optimize_weights::DGBindOptEData
, protocols::optimize_weights::NestedEnergyTermPNatAAOptEPositionData
, protocols::optimize_weights::OptEData
, protocols::optimize_weights::OptEPositionData
, protocols::optimize_weights::PNatAAOptEPositionData
, protocols::optimize_weights::PNatRotOptEPositionData
, protocols::optimize_weights::PNatStructureOptEData
, protocols::optimize_weights::PSSMOptEPositionData
- write_to_file_
: protocols::stepwise::modeler::rna::checker::RNA_VDW_BinChecker
- write_to_pdb()
: protocols::matdes::ClashCheckFilter
, protocols::matdes::OligomericAverageDegreeFilter
, protocols::matdes::SymUnsatHbondFilter
, protocols::protein_interface_design::filters::SequenceRecoveryFilter
, protocols::simple_filters::DdGScan
, protocols::simple_filters::MutationsFilter
, protocols::simple_filters::RotamerBoltzmannWeight
, protocols::simple_filters::TaskAwareScoreTypeFilter
- write_to_stream()
: protocols::canonical_sampling::BiasEnergy::Histogram< T >
, protocols::contact_map::ContactMap
, protocols::noesy_assign::CrossPeakList
, protocols::noesy_assign::FloatingResonance
, protocols::noesy_assign::FragsToAtomDist
, protocols::noesy_assign::Resonance
, protocols::noesy_assign::ResonanceList
- write_to_string()
: protocols::canonical_sampling::BiasEnergy::Histogram< T >
, protocols::canonical_sampling::BiasEnergy
- write_undefined_coef1()
: protocols::branch_angle::BranchAngleOptimizer
- write_undefined_coef2()
: protocols::branch_angle::BranchAngleOptimizer
- write_unrecognized_atoms_table_schema()
: protocols::features::UnrecognizedAtomFeatures
- write_unrecognized_neighbors_table_schema()
: protocols::features::UnrecognizedAtomFeatures
- write_unrecognized_residues_table_schema()
: protocols::features::UnrecognizedAtomFeatures
- write_virtual_atoms()
: protocols::match::output::ResidueKinemageWriter
, protocols::match::output::WriteUpstreamHitKinemage
- write_virtual_atoms_
: protocols::match::output::ResidueKinemageWriter
, protocols::match::output::WriteUpstreamHitKinemage
- write_water_hbond_geom_table_schema()
: protocols::features::WaterFeatures
- write_work_unit()
: protocols::wum::WorkUnitManager
- WriteableCacheableDataOP
: protocols::abinitio::abscript::JumpSampleDataCreator
, protocols::environment::AutoCutDataCreator
- WriteFileSFB()
: protocols::jd2::WriteFileSFB
- WriteLigandMolFile()
: protocols::ligand_docking::WriteLigandMolFile
- WriteOut_MpiFileBuffer()
: protocols::jd2::WriteOut_MpiFileBuffer
- writer_
: protocols::match::output::MatchProcessor
- WriteUpstreamCoordinateKinemage()
: protocols::match::output::WriteUpstreamCoordinateKinemage
- WriteUpstreamHitKinemage()
: protocols::match::output::WriteUpstreamHitKinemage
- wRMSD()
: protocols::toolbox::DecoySetEvaluation
- wt_
: protocols::canonical_sampling::PatchOperation
, protocols::simple_moves::symmetry::SetupNCSMover
- wt_aa_
: protocols::optimize_weights::DDGMutationOptEData
- wt_adp_
: protocols::electron_density::BfactorFittingMover
, protocols::electron_density::BfactorMultifunc
- wt_complexes_
: protocols::optimize_weights::DDGBindOptEData
- WT_COMPLEXES_LIST_FILE
: protocols::optimize_weights::DDGBindOptEData
- wt_components_
: protocols::ddg::ddGMover
- wt_dens_
: protocols::electron_density::BfactorFittingMover
, protocols::electron_density::BfactorMultifunc
- wt_residue_
: protocols::pmut_scan::MutationData
- wt_score_components()
: protocols::ddg::ddGMover
- wt_unbound_components_
: protocols::ddg::ddGMover
- wt_unbound_score_components()
: protocols::ddg::ddGMover
- wt_unbounds_
: protocols::optimize_weights::DDGBindOptEData
- WT_UNBOUNDS_LIST_FILE
: protocols::optimize_weights::DDGBindOptEData
- wt_unfolded_energies_emap_
: protocols::optimize_weights::NestedEnergyTermDDGMutationOptEData
- wtD_
: protocols::simple_moves::symmetry::SetupNCSMover
- WTEBiasEnergy()
: protocols::canonical_sampling::WTEBiasEnergy
- wts_
: protocols::optimize_weights::DDGMutationOptEData
- wu_desc_buf
: protocols::boinc::BoincSharedMemory
- wu_desc_exists
: protocols::boinc::BoincSharedMemory
- wu_mem_pair
: protocols::wum2::WUQueue
- wu_type_
: protocols::wum::WorkUnitBase::WU_Header
- wum_
: protocols::wum::WorkUnitQueue_Swapped
- WUQueue()
: protocols::wum2::WUQueue
- wus_
: protocols::wum::WorkUnitQueue