Here is a list of all class members with links to the classes they belong to:
- q -
- q1
: protocols::frag_picker::scores::GunnTuple
, protocols::simple_moves::GunnTuple
- q2
: protocols::frag_picker::scores::GunnTuple
, protocols::simple_moves::GunnTuple
- q3
: protocols::frag_picker::scores::GunnTuple
, protocols::simple_moves::GunnTuple
- q4
: protocols::frag_picker::scores::GunnTuple
, protocols::simple_moves::GunnTuple
- q5
: protocols::frag_picker::scores::GunnTuple
, protocols::simple_moves::GunnTuple
- q6
: protocols::frag_picker::scores::GunnTuple
, protocols::simple_moves::GunnTuple
- q_pos_
: protocols::frag_picker::quota::QuotaSelector
- Qs
: protocols::simple_filters::SymmetricMotifFilter
- qsar_map_
: protocols::qsar::qsarMap
, protocols::qsar::qsarMover
, protocols::qsar::scoring_grid::GridManager
- qsarMap()
: protocols::qsar::qsarMap
- qsarMover()
: protocols::qsar::qsarMover
- qsarOptFunc()
: protocols::qsar::qsarOptFunc
- qsarPoint()
: protocols::qsar::qsarPoint
- quality()
: protocols::frag_picker::PhiPsiTalosIO
- quality_class()
: protocols::noesy_assign::CrossPeak
- quality_class_str()
: protocols::noesy_assign::CrossPeak
- QualityClass
: protocols::noesy_assign::CrossPeak
- quench_temp_
: protocols::moves::MonteCarlo
- query_
: protocols::frag_picker::scores::DisulfideIdentity
, protocols::frag_picker::scores::HydrophobicityProfileSimilarity
, protocols::frag_picker::scores::HydrophobicitySimilarity
, protocols::frag_picker::scores::Phi
, protocols::frag_picker::scores::ProlinePhiScore
, protocols::frag_picker::scores::Psi
, protocols::frag_picker::scores::RamaScore
, protocols::frag_picker::scores::SecondaryIdentity
, protocols::frag_picker::scores::SequenceIdentity
, protocols::frag_picker::scores::SolventAccessibility
- query_bin_probs_
: protocols::frag_picker::scores::LAMBEGO_Similarity
, protocols::frag_picker::scores::TorsionBinSimilarity
- query_class_
: protocols::frag_picker::scores::PhiPsiSquareWell
- query_cnt_
: protocols::frag_picker::scores::PhiPsiSquareWell
- query_d_phi_
: protocols::frag_picker::scores::PhiPsiSquareWell
- query_d_psi_
: protocols::frag_picker::scores::PhiPsiSquareWell
- query_dist_
: protocols::frag_picker::scores::PhiPsiSquareWell
- query_end_
: protocols::antibody_legacy::GraftOneMover
- query_index()
: protocols::comparative_modeling::ExtraThreadingMover
, protocols::comparative_modeling::ThreadingMover
- query_index_
: protocols::comparative_modeling::ExtraThreadingMover
, protocols::comparative_modeling::ThreadingMover
- query_len_
: protocols::frag_picker::scores::ABEGO_SS_Score
, protocols::frag_picker::scores::LAMBEGO_Similarity
, protocols::frag_picker::scores::PartialSecondarySimilarity
, protocols::frag_picker::scores::Psi
, protocols::frag_picker::scores::SecondarySimilarity
, protocols::frag_picker::scores::TalosSSSimilarity
, protocols::frag_picker::scores::TorsionBinSimilarity
- query_length()
: protocols::frag_picker::BoundedCollector< StrictWeakOrdering >
, protocols::frag_picker::CandidatesCollector
, protocols::frag_picker::GrabAllCollector
, protocols::frag_picker::quota::ABEGO_SS_Pool
, protocols::frag_picker::quota::QuotaCollector
, protocols::frag_picker::quota::SecondaryStructurePool
- query_name()
: protocols::toolbox::task_operations::AlignedThreadOperation
- query_name_
: protocols::toolbox::task_operations::AlignedThreadOperation
- query_phi_
: protocols::frag_picker::scores::PhiPsiRmsd
, protocols::frag_picker::scores::PhiPsiSquareWell
- query_phi_prediction_
: protocols::frag_picker::FragmentPicker
, protocols::frag_picker::scores::Phi
- query_phi_prediction_conf_
: protocols::frag_picker::FragmentPicker
, protocols::frag_picker::scores::Phi
- query_position_i_
: protocols::frag_picker::nonlocal::NonlocalPair
- query_position_j_
: protocols::frag_picker::nonlocal::NonlocalPair
- query_positions_
: protocols::frag_picker::FragmentPicker
- query_profile_
: protocols::frag_picker::FragmentPicker
, protocols::frag_picker::scores::HydrophobicityProfileSimilarity
, protocols::frag_picker::scores::ProfileScore
, protocols::frag_picker::scores::ProfileScoreBlosum62
, protocols::frag_picker::scores::ProfileScoreDistWeight
, protocols::frag_picker::scores::ProfileScoreL1
, protocols::frag_picker::scores::ProfileScoreStructL1
- query_psi_
: protocols::frag_picker::scores::PhiPsiRmsd
, protocols::frag_picker::scores::PhiPsiSquareWell
- query_psi_prediction_
: protocols::frag_picker::FragmentPicker
, protocols::frag_picker::scores::Psi
- query_psi_prediction_conf_
: protocols::frag_picker::FragmentPicker
, protocols::frag_picker::scores::Psi
- query_region()
: protocols::simple_filters::DomainInterfaceFilter
- query_region_
: protocols::simple_filters::DomainInterfaceFilter
- query_region_str_
: protocols::simple_filters::DomainInterfaceFilter
- query_region_string()
: protocols::simple_filters::DomainInterfaceFilter
- query_residue_depth_
: protocols::frag_picker::FragmentPicker
, protocols::frag_picker::scores::FragmentCrmsdResDepth
- query_s2_
: protocols::frag_picker::scores::PhiPsiSquareWell
- query_sa_prediction_
: protocols::frag_picker::FragmentPicker
- query_seq_as_string_
: protocols::frag_picker::FragmentPicker
- query_sequence()
: protocols::abinitio::Template
- query_sequence_
: protocols::frag_picker::scores::FragmentAllAtomCrmsd
, protocols::frag_picker::scores::ProfileScoreDistWeight
- query_size_
: protocols::frag_picker::scores::AtomBasedConstraintsScore
- query_ss_
: protocols::frag_picker::scores::ProfileScoreDistWeight
, protocols::frag_picker::scores::RamaScore
, protocols::frag_picker::scores::SecondarySimilarity
, protocols::frag_picker::scores::TalosSSSimilarity
- query_ss_as_string_
: protocols::frag_picker::FragmentPicker
- query_ss_profile_
: protocols::frag_picker::FragmentPicker
- query_start_
: protocols::antibody_legacy::GraftOneMover
- queryResidueIndex_
: protocols::frag_picker::FragmentCandidate
- querytag_
: protocols::jd2::CompareTags
- queue_batch()
: protocols::jd2::archive::ArchiveManager
, protocols::jd2::archive::BaseArchiveManager
- queue_for_annotation()
: protocols::environment::claims::EnvClaim
- queue_head_
: protocols::match::output::UpstreamHitCacher
- quick()
: protocols::simple_filters::ShapeComplementarityFilter
- quick_
: protocols::simple_filters::ShapeComplementarityFilter
- quick_alignment_
: protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
- quick_alignment_pose_
: protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
- quick_alignment_pose_is_intialized_
: protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
- quick_alignment_tag_
: protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
- quick_and_dirty_
: protocols::motifs::LigandMotifSearch
, protocols::motifs::MotifSearch
- quick_closure()
: protocols::seeded_abinitio::CloseFold
- QuickRepacker()
: protocols::pack_daemon::QuickRepacker
- quota_fraction_
: protocols::frag_picker::quota::QuotaPool
- quota_protocol()
: protocols::frag_picker::FragmentPicker
- quota_score()
: protocols::frag_picker::quota::ABEGO_SS_Pool
, protocols::frag_picker::quota::QuotaPool
, protocols::frag_picker::quota::SecondaryStructurePool
- QuotaCollector()
: protocols::frag_picker::quota::QuotaCollector
- QuotaConfig()
: protocols::frag_picker::quota::QuotaConfig
- QuotaDebug()
: protocols::frag_picker::QuotaDebug
- QuotaPool()
: protocols::frag_picker::quota::QuotaPool
- QuotaSelector()
: protocols::frag_picker::quota::QuotaSelector