Rosetta Protocols
2015.09
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~
Here is a list of all class members with links to the classes they belong to:
- ~ -
~AACompositionEnergy() :
protocols::fldsgn::potentials::AACompositionEnergy
~ABEGO_SS_Map() :
protocols::frag_picker::quota::ABEGO_SS_Map
~ABEGO_SS_Pool() :
protocols::frag_picker::quota::ABEGO_SS_Pool
~ABEGO_SS_Score() :
protocols::frag_picker::scores::ABEGO_SS_Score
~AbinitioBaseFilter() :
protocols::simple_filters::AbinitioBaseFilter
~AbinitioMoverWeight() :
protocols::topology_broker::weights::AbinitioMoverWeight
~AbrelaxApplication() :
protocols::abinitio::AbrelaxApplication
~AbrelaxMover() :
protocols::abinitio::AbrelaxMover
~AbscriptLoopCloserCM() :
protocols::abinitio::abscript::AbscriptLoopCloserCM
~AbstractArchiveBase() :
protocols::jd2::archive::AbstractArchiveBase
~ActiveSiteGrid() :
protocols::match::downstream::ActiveSiteGrid
~AdaptiveScoreHistogram() :
protocols::frag_picker::scores::AdaptiveScoreHistogram
~AddAllPositionsMPM() :
protocols::match::AddAllPositionsMPM
~AddChainBreak() :
protocols::protein_interface_design::movers::AddChainBreak
~AddConstraintsToCurrentConformationMover() :
protocols::simple_moves::AddConstraintsToCurrentConformationMover
~AddGood2BPairEnergyRotamers() :
protocols::toolbox::rotamer_set_operations::AddGood2BPairEnergyRotamers
~AddHydrogen() :
protocols::ligand_docking::AddHydrogen
~AddHydrogens() :
protocols::ligand_docking::AddHydrogens
~AdditionalOutputWrapper() :
protocols::rosetta_scripts::AdditionalOutputWrapper
~AddJobPairData() :
protocols::simple_moves::AddJobPairData
~AddLigandMotifRotamers() :
protocols::enzdes::AddLigandMotifRotamers
~AddMembraneMover() :
protocols::membrane::AddMembraneMover
~AddMover() :
protocols::stepwise::monte_carlo::mover::AddMover
~AddOrDeleteMover() :
protocols::stepwise::monte_carlo::mover::AddOrDeleteMover
~AddOrRemoveMatchCsts() :
protocols::enzdes::AddOrRemoveMatchCsts
~AddRigidBodyLigandConfs() :
protocols::enzdes::AddRigidBodyLigandConfs
~AddSearchPatternRotSetOp() :
protocols::hotspot_hashing::AddSearchPatternRotSetOp
~AddSidechainConstraintsToHotspots() :
protocols::protein_interface_design::movers::AddSidechainConstraintsToHotspots
~AddZincSiteConstraints() :
protocols::metal_interface::AddZincSiteConstraints
~AlaScan() :
protocols::simple_filters::AlaScan
~Align_RmsdEvaluator() :
protocols::comparative_modeling::Align_RmsdEvaluator
~Align_RotamerEvaluator() :
protocols::comparative_modeling::Align_RotamerEvaluator
~AlignedThreadOperation() :
protocols::toolbox::task_operations::AlignedThreadOperation
~AlignEvaluator() :
protocols::evaluation::AlignEvaluator
~AlignmentCluster() :
protocols::comparative_modeling::AlignmentCluster
~AlignmentClustering() :
protocols::comparative_modeling::AlignmentClustering
~AlignmentSet() :
protocols::comparative_modeling::AlignmentSet
~AlignPoseToInvrotTreeMover() :
protocols::toolbox::match_enzdes_util::AlignPoseToInvrotTreeMover
~AlignRmsdTargetEvaluatorCreator() :
protocols::comparative_modeling::AlignRmsdTargetEvaluatorCreator
~AllAtomNormalization() :
protocols::qsar::scoring_grid::AllAtomNormalization
~AllowedSeqposForGeomCst() :
protocols::toolbox::match_enzdes_util::AllowedSeqposForGeomCst
~AllowInsert() :
protocols::toolbox::AllowInsert
~AlterSpecDisruptionDriver() :
protocols::pmut_scan::AlterSpecDisruptionDriver
~Anchor() :
protocols::anchored_design::Anchor
~AnchoredDesignMover() :
protocols::anchored_design::AnchoredDesignMover
~AnchoredGraftMover() :
protocols::grafting::AnchoredGraftMover
~AnchoredPerturbMover() :
protocols::anchored_design::AnchoredPerturbMover
~AnchoredRefineMover() :
protocols::anchored_design::AnchoredRefineMover
~AnchorMoversData() :
protocols::anchored_design::AnchorMoversData
~AnchorSugarScreener() :
protocols::stepwise::screener::AnchorSugarScreener
~AndSelector() :
protocols::pose_selectors::AndSelector
~AngleToVector() :
protocols::simple_filters::AngleToVector
~AntibodyDatabaseManager() :
protocols::antibody::AntibodyDatabaseManager
~AntibodyDesignModeler() :
protocols::antibody::design::AntibodyDesignModeler
~AntibodyDesignMover() :
protocols::antibody::design::AntibodyDesignMover
~AntibodyDesignMoverGenerator() :
protocols::antibody::design::AntibodyDesignMoverGenerator
~AntibodyEnumManager() :
protocols::antibody::AntibodyEnumManager
~AntibodyFeaturesCreator() :
protocols::antibody::AntibodyFeaturesCreator
~AntibodyGraftDesignMover() :
protocols::antibody::design::AntibodyGraftDesignMover
~AntibodyInfo() :
protocols::antibody::AntibodyInfo
~AntibodyModeler() :
protocols::antibody_legacy::AntibodyModeler
~AntibodyModelerProtocol() :
protocols::antibody::AntibodyModelerProtocol
~AntibodyNumberingParser() :
protocols::antibody::AntibodyNumberingParser
~AntibodySeqDesignMover() :
protocols::antibody::design::AntibodySeqDesignMover
~AntibodySeqDesignTFCreator() :
protocols::antibody::design::AntibodySeqDesignTFCreator
~APCluster() :
protocols::cluster::APCluster
~ApplyRandomStoredRBConf() :
protocols::enzdes::ApplyRandomStoredRBConf
~ArchiveBase() :
protocols::jd2::archive::ArchiveBase
~ArchiveManager() :
protocols::jd2::archive::ArchiveManager
~AsymFoldandDockMoveRbJumpMover() :
protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockMoveRbJumpMover
~AsymFoldandDockRbTrialMover() :
protocols::simple_moves::asym_fold_and_dock::AsymFoldandDockRbTrialMover
~AsyncMPITemperingBase() :
protocols::canonical_sampling::AsyncMPITemperingBase
~AtomAtomPairFeatures() :
protocols::features::AtomAtomPairFeatures
~AtomAtomPairFeaturesCreator() :
protocols::features::AtomAtomPairFeaturesCreator
~AtomCoordinateCstMover() :
protocols::relax::AtomCoordinateCstMover
~AtomCountFilter() :
protocols::ligand_docking::AtomCountFilter
~AtomGeometrySecMatchRPE() :
protocols::match::downstream::AtomGeometrySecMatchRPE
~AtomicContactCountFilter() :
protocols::protein_interface_design::filters::AtomicContactCountFilter
~AtomicContactFilter() :
protocols::simple_filters::AtomicContactFilter
~AtomicDistanceFilter() :
protocols::simple_filters::AtomicDistanceFilter
~AtomInResidueAtomInResiduePairFeatures() :
protocols::features::AtomInResidueAtomInResiduePairFeatures
~AtomInResidueAtomInResiduePairFeaturesCreator() :
protocols::features::AtomInResidueAtomInResiduePairFeaturesCreator
~AtomPairConstraintsData() :
protocols::frag_picker::scores::AtomPairConstraintsData
~AtomTreeDiffJobDistributor() :
protocols::jobdist::AtomTreeDiffJobDistributor
~AtomTreeDiffJobInputter() :
protocols::jd2::AtomTreeDiffJobInputter
~AtomTreeDiffJobOutputter() :
protocols::jd2::AtomTreeDiffJobOutputter
~AtomTypesFeatures() :
protocols::features::AtomTypesFeatures
~AtomTypesFeaturesCreator() :
protocols::features::AtomTypesFeaturesCreator
~Attachment() :
protocols::stepwise::monte_carlo::Attachment
~AverageDegreeFilter() :
protocols::protein_interface_design::filters::AverageDegreeFilter
~AveragePathLengthFilter() :
protocols::simple_filters::AveragePathLengthFilter
~BackboneMover() :
protocols::simple_moves::BackboneMover
~BackboneSampler() :
protocols::enzdes::BackboneSampler
~BackboneTorsionPerturbation() :
protocols::hybridization::BackboneTorsionPerturbation
~BackboneTorsionSampler() :
protocols::hybridization::BackboneTorsionSampler
~BackrubDDMover() :
protocols::protein_interface_design::movers::BackrubDDMover
~BackrubSidechainMover() :
protocols::backrub::BackrubSidechainMover
~BalancedKicMover() :
protocols::kinematic_closure::BalancedKicMover
~BaseArchiveManager() :
protocols::jd2::archive::BaseArchiveManager
~BaseBinMapUpdater() :
protocols::stepwise::screener::BaseBinMapUpdater
~BaseCentroidScreener() :
protocols::stepwise::screener::BaseCentroidScreener
~BaseDisulfPairingLibrary() :
protocols::jumping::BaseDisulfPairingLibrary
~BaseJobDistributor() :
protocols::jobdist::BaseJobDistributor
~BaseJumpSetup() :
protocols::jumping::BaseJumpSetup
~BasePairingLibrary() :
protocols::jumping::BasePairingLibrary
~BasePairStep() :
protocols::farna::BasePairStep
~BasePairStepLibrary() :
protocols::farna::BasePairStepLibrary
~BasePairStepSequence() :
protocols::farna::BasePairStepSequence
~BaseTabooPerturber() :
protocols::loops::loop_closure::kinematic_closure::BaseTabooPerturber
~BasicCDRClusterSet() :
protocols::antibody::clusters::BasicCDRClusterSet
~BasicInit() :
protocols::rpc::BasicInit
~BasicJob() :
protocols::jobdist::BasicJob
~BasicJumpClaimer() :
protocols::topology_broker::BasicJumpClaimer
~BasicSimAnnealerRepacker() :
protocols::pack_daemon::BasicSimAnnealerRepacker
~BatchFeatures() :
protocols::features::BatchFeatures
~BatchJobInputter() :
protocols::jd2::BatchJobInputter
~BBConRotMover() :
protocols::simple_moves::BBConRotMover
~BBG8T3AMover() :
protocols::simple_moves::BBG8T3AMover
~BBGaussianMover() :
protocols::simple_moves::BBGaussianMover
~BDR() :
protocols::forge::components::BDR
~BestHotspotCstMover() :
protocols::protein_interface_design::movers::BestHotspotCstMover
~BestMatchesCollection() :
protocols::match::output::BestMatchesCollection
~BestTotalScoreSelector() :
protocols::frag_picker::BestTotalScoreSelector
~BetaAlphaBetaMotif() :
protocols::fldsgn::topology::BetaAlphaBetaMotif
~BetaAlphaBetaMotifSet() :
protocols::fldsgn::topology::BetaAlphaBetaMotifSet
~BetaTurnDetection() :
protocols::features::BetaTurnDetection
~BetaTurnDetectionFeatures() :
protocols::features::BetaTurnDetectionFeatures
~BetaTurnDetectionFeaturesCreator() :
protocols::features::BetaTurnDetectionFeaturesCreator
~BfactorFittingMover() :
protocols::electron_density::BfactorFittingMover
~BfactorMPM() :
protocols::match::BfactorMPM
~BfactorMultifunc() :
protocols::electron_density::BfactorMultifunc
~BiasedFragmentMover() :
protocols::nonlocal::BiasedFragmentMover
~BiasEnergy() :
protocols::canonical_sampling::BiasEnergy
~BindingSiteConstraintCreator() :
protocols::constraints_additional::BindingSiteConstraintCreator
~BindingStrainFilter() :
protocols::protein_interface_design::filters::BindingStrainFilter
~BluePrint() :
protocols::jd2::parser::BluePrint
~BluePrintBDR() :
protocols::fldsgn::BluePrintBDR
~BoincCurrentPoseObserver() :
protocols::boinc::BoincCurrentPoseObserver
~BOINCJobDistributor() :
protocols::jd2::BOINCJobDistributor
~BoltzmannFilter() :
protocols::protein_interface_design::filters::BoltzmannFilter
~BoltzmannRotamerMover() :
protocols::simple_moves::BoltzmannRotamerMover
~Bool3DGrid() :
protocols::match::Bool3DGrid
~Bool3DGridKinemageWriter() :
protocols::match::Bool3DGridKinemageWriter
~BranchAngleOptimizer() :
protocols::branch_angle::BranchAngleOptimizer
~Bridge() :
protocols::forge::build::Bridge
~BuildAlaPose() :
protocols::protein_interface_design::movers::BuildAlaPose
~BuildingBlockInterfaceOperation() :
protocols::matdes::BuildingBlockInterfaceOperation
~BuildInstruction() :
protocols::forge::build::BuildInstruction
~BuildManager() :
protocols::forge::build::BuildManager
~BuildPosition() :
protocols::motifs::BuildPosition
~BuildSet() :
protocols::match::upstream::BuildSet
~BulgeApplier() :
protocols::stepwise::screener::BulgeApplier
~BulgeApplyMover() :
protocols::stepwise::modeler::rna::bulge::BulgeApplyMover
~BulgeUnApplyMover() :
protocols::stepwise::modeler::rna::bulge::BulgeUnApplyMover
~BumpGrid() :
protocols::match::BumpGrid
~BundleGridSampler() :
protocols::helical_bundle::BundleGridSampler
~BundleGridSamplerHelper() :
protocols::helical_bundle::BundleGridSamplerHelper
~BundleParameters() :
protocols::helical_bundle::parameters::BundleParameters
~BundleParametersSet() :
protocols::helical_bundle::parameters::BundleParametersSet
~BuriedPolarScore() :
protocols::sic_dock::BuriedPolarScore
~BuriedUnsatHbondFilter() :
protocols::simple_filters::BuriedUnsatHbondFilter
~CAcstGenerator() :
protocols::seeded_abinitio::CAcstGenerator
~CalculatorFilter() :
protocols::filters::CalculatorFilter
~CamShiftEvaluatorCreator() :
protocols::simple_filters::CamShiftEvaluatorCreator
~CartesianMD() :
protocols::md::CartesianMD
~CartesianNormalModeMover() :
protocols::normalmode::CartesianNormalModeMover
~CBScore() :
protocols::sic_dock::CBScore
~CCDEndsGraftMover() :
protocols::grafting::CCDEndsGraftMover
~CCDLoopClosureMover() :
protocols::loops::loop_closure::ccd::CCDLoopClosureMover
~CCluster() :
protocols::pockets::CCluster
~CDRCluster() :
protocols::antibody::clusters::CDRCluster
~CDRClusterEnumManager() :
protocols::antibody::clusters::CDRClusterEnumManager
~CDRClusterFeatures() :
protocols::antibody::clusters::CDRClusterFeatures
~CDRClusterFeaturesCreator() :
protocols::antibody::clusters::CDRClusterFeaturesCreator
~CDRClusterMatcher() :
protocols::antibody::clusters::CDRClusterMatcher
~CDRClusterSet() :
protocols::antibody::clusters::CDRClusterSet
~CDRGraftDesignOptions() :
protocols::antibody::design::CDRGraftDesignOptions
~CDRGraftDesignOptionsParser() :
protocols::antibody::design::CDRGraftDesignOptionsParser
~CDRH3Modeler() :
protocols::antibody_legacy::CDRH3Modeler
~CDRSeqDesignOptions() :
protocols::antibody::design::CDRSeqDesignOptions
~CDRSeqDesignOptionsParser() :
protocols::antibody::design::CDRSeqDesignOptionsParser
~CDRSetOptions() :
protocols::antibody::CDRSetOptions
~CDRSetOptionsParser() :
protocols::antibody::CDRSetOptionsParser
~CDRsMinPackMin() :
protocols::antibody::CDRsMinPackMin
~CentroidDistanceScreener() :
protocols::stepwise::screener::CentroidDistanceScreener
~CentroidRelax() :
protocols::relax::CentroidRelax
~CentroidRelaxMover() :
protocols::surface_docking::CentroidRelaxMover
~ChainExistsFilter() :
protocols::ligand_docking::ChainExistsFilter
~ChainGroupDiscriminator() :
protocols::simple_moves::ChainGroupDiscriminator
~ChainSplitMover() :
protocols::simple_moves::ChainSplitMover
~ChangeAndResetFoldTreeMover() :
protocols::simple_moves::ChangeAndResetFoldTreeMover
~ChargeCalculator() :
protocols::toolbox::pose_metric_calculators::ChargeCalculator
~ChargeChargeFeatures() :
protocols::features::ChargeChargeFeatures
~ChargeChargeFeaturesCreator() :
protocols::features::ChargeChargeFeaturesCreator
~CheckPointer() :
protocols::checkpoint::CheckPointer
~ChemicalShiftEvaluatorCreator() :
protocols::sparta::ChemicalShiftEvaluatorCreator
~ChiAngleNormalization() :
protocols::qsar::scoring_grid::ChiAngleNormalization
~ChiralMover() :
protocols::simple_moves::chiral::ChiralMover
~ChiWellRmsdEvaluatorCreator() :
protocols::simple_filters::ChiWellRmsdEvaluatorCreator
~Chunk() :
protocols::nonlocal::Chunk
~ChunkSet() :
protocols::farna::ChunkSet
~CircularPermutation() :
protocols::fldsgn::CircularPermutation
~ClaimerMessage() :
protocols::topology_broker::ClaimerMessage
~ClashCheckFilter() :
protocols::matdes::ClashCheckFilter
~ClashWithTargetFilter() :
protocols::protein_interface_design::filters::ClashWithTargetFilter
~ClassicAbinitio() :
protocols::abinitio::ClassicAbinitio
~ClassicFragmentMover() :
protocols::simple_moves::ClassicFragmentMover
~ClassicMatchAlgorithm() :
protocols::match::downstream::ClassicMatchAlgorithm
~ClassicRelax() :
protocols::relax::ClassicRelax
~ClearConstraintsMover() :
protocols::simple_moves::ClearConstraintsMover
~ClientMover() :
protocols::environment::ClientMover
~CloseFold() :
protocols::seeded_abinitio::CloseFold
~CloseOneCDRLoop() :
protocols::antibody::CloseOneCDRLoop
~ClosureProblem() :
protocols::kinematic_closure::ClosureProblem
~CloudPDBWriter() :
protocols::match::output::CloudPDBWriter
~Cluster_Member() :
protocols::stepwise::legacy::modeler::rna::Cluster_Member
~Clusterer() :
protocols::mpi_refinement::Clusterer
~ClusterPhilStyle() :
protocols::cluster::ClusterPhilStyle
~ClusterPhilStyle_Loop() :
protocols::cluster::ClusterPhilStyle_Loop
~ClusterPhilStyle_PoseReporter() :
protocols::cluster::ClusterPhilStyle_PoseReporter
~ClusterPoseSelector() :
protocols::pose_selectors::ClusterPoseSelector
~CoarseRNA_DeNovoProtocol() :
protocols::coarse_rna::CoarseRNA_DeNovoProtocol
~CoarseRNA_Fragments() :
protocols::coarse_rna::CoarseRNA_Fragments
~COFilter() :
protocols::simple_filters::COFilter
~Combine_Tags_Info() :
protocols::stepwise::modeler::rna::Combine_Tags_Info
~CombinedConstraintEvaluatorCreator() :
protocols::constraints_additional::CombinedConstraintEvaluatorCreator
~CombinedFilter() :
protocols::filters::CombinedFilter
~CombinePoseMover() :
protocols::simple_moves::CombinePoseMover
~CompareByScoreCombination() :
protocols::frag_picker::CompareByScoreCombination
~CompareTotalScore() :
protocols::frag_picker::CompareTotalScore
~CompleteConnectionsFilter() :
protocols::ligand_docking::CompleteConnectionsFilter
~CompositeFragmentSelector() :
protocols::frag_picker::CompositeFragmentSelector
~CompoundFilter() :
protocols::filters::CompoundFilter
~CompoundTranslate() :
protocols::ligand_docking::CompoundTranslate
~ComputeLigandRDF() :
protocols::ligand_docking::ComputeLigandRDF
~CoMTrackerCM() :
protocols::environment::CoMTrackerCM
~ConcurrencyTestCreator() :
protocols::features::helixAssembly::ConcurrencyTestCreator
~ConformationViewer() :
protocols::viewer::ConformationViewer
~ConnectRight() :
protocols::forge::build::ConnectRight
~ConsensusDesignMover() :
protocols::simple_moves::ConsensusDesignMover
~ConservativeDesignOperation() :
protocols::antibody::design::ConservativeDesignOperation
~ConservedPosMutationFilter() :
protocols::simple_filters::ConservedPosMutationFilter
~ConstantScoreBase() :
protocols::qsar::scoring_grid::ConstantScoreBase
~ConstraintedOptimizationWeightFunc() :
protocols::optimize_weights::ConstraintedOptimizationWeightFunc
~ConstraintEvaluatorCreator() :
protocols::constraints_additional::ConstraintEvaluatorCreator
~ConstraintEvaluatorWrapperCreator() :
protocols::topology_broker::ConstraintEvaluatorWrapperCreator
~ConstraintFileRCG() :
protocols::forge::constraints::ConstraintFileRCG
~ConstrainToIdealMover() :
protocols::simple_moves::ConstrainToIdealMover
~ConstraintSetMover() :
protocols::simple_moves::ConstraintSetMover
~ConstraintSetScore() :
protocols::sic_dock::ConstraintSetScore
~Contact() :
protocols::frag_picker::Contact
~ContactCounts() :
protocols::frag_picker::ContactCounts
~ContactMap() :
protocols::contact_map::ContactMap
~ContactMapEvaluator() :
protocols::simple_filters::ContactMapEvaluator
~ContactMapEvaluatorCreator() :
protocols::simple_filters::ContactMapEvaluatorCreator
~ContingentFilter() :
protocols::filters::ContingentFilter
~CoordConstraintClaimer() :
protocols::topology_broker::CoordConstraintClaimer
~CoordinateCst() :
protocols::seeded_abinitio::CoordinateCst
~CopyDofMover() :
protocols::simple_moves::CopyDofMover
~CoreDunbrackFilter() :
protocols::fldsgn::filters::CoreDunbrackFilter
~CoupledMover() :
protocols::simple_moves::CoupledMover
~CovalentConnectionReplaceInfo() :
protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo
~CreateAngleConstraint() :
protocols::cyclic_peptide::CreateAngleConstraint
~CreateDistanceConstraint() :
protocols::cyclic_peptide::CreateDistanceConstraint
~CreateTorsionConstraint() :
protocols::cyclic_peptide::CreateTorsionConstraint
~CrossPeak() :
protocols::noesy_assign::CrossPeak
~CrossPeak3D() :
protocols::noesy_assign::CrossPeak3D
~CrossPeak4D() :
protocols::noesy_assign::CrossPeak4D
~CrossPeakInfo() :
protocols::noesy_assign::CrossPeakInfo
~CrossPeakList() :
protocols::noesy_assign::CrossPeakList
~CrystalContactsOperation() :
protocols::toolbox::task_operations::CrystalContactsOperation
~CstResInteractions() :
protocols::toolbox::match_enzdes_util::CstResInteractions
~CustomScoreSelector() :
protocols::frag_picker::CustomScoreSelector
~CutChainMover() :
protocols::simple_moves::CutChainMover
~CyclizationMover() :
protocols::simple_moves::CyclizationMover
~DaemonSet() :
protocols::pack_daemon::DaemonSet
~DarcParticleSwarmMinimizer() :
protocols::pockets::DarcParticleSwarmMinimizer
~DatabaseEntryWorkUnit() :
protocols::wum::DatabaseEntryWorkUnit
~DatabaseFilter() :
protocols::features::DatabaseFilter
~DatabaseJobInputter() :
protocols::features::DatabaseJobInputter
~DatabaseJobOutputter() :
protocols::features::DatabaseJobOutputter
~DatabaseThread() :
protocols::toolbox::task_operations::DatabaseThread
~DataBuffer() :
protocols::canonical_sampling::mc_convergence_checks::DataBuffer
~DataLoader() :
protocols::jd2::parser::DataLoader
~DataLoaderCreator() :
protocols::jd2::parser::DataLoaderCreator
~DataLoaderFactory() :
protocols::jd2::parser::DataLoaderFactory
~DataPoint() :
protocols::cluster::DataPoint
~ddG() :
protocols::simple_moves::ddG
~DDGBindOptEData() :
protocols::optimize_weights::DDGBindOptEData
~DdGFeatures() :
protocols::features::DdGFeatures
~DdGFeaturesCreator() :
protocols::features::DdGFeaturesCreator
~DdgFilter() :
protocols::simple_filters::DdgFilter
~ddGMover() :
protocols::ddg::ddGMover
~DDGMutationOptEData() :
protocols::optimize_weights::DDGMutationOptEData
~DdGScan() :
protocols::simple_filters::DdGScan
~DeclareBond() :
protocols::cyclic_peptide::DeclareBond
~DecoySetEvaluation() :
protocols::toolbox::DecoySetEvaluation
~DefineMovableLoops() :
protocols::seeded_abinitio::DefineMovableLoops
~DeleteMover() :
protocols::stepwise::monte_carlo::mover::DeleteMover
~DeleteRegionMover() :
protocols::grafting::simple_movers::DeleteRegionMover
~DeltaFilter() :
protocols::simple_filters::DeltaFilter
~DenseIGRepacker() :
protocols::pack_daemon::DenseIGRepacker
~DensityMorphingMover() :
protocols::electron_density::DensityMorphingMover
~DesignableResiduesFilter() :
protocols::protein_interface_design::filters::DesignableResiduesFilter
~DesignAroundOperation() :
protocols::toolbox::task_operations::DesignAroundOperation
~DesignMinimizeHbonds() :
protocols::protein_interface_design::movers::DesignMinimizeHbonds
~DesignProteinBackboneAroundDNA() :
protocols::dna::DesignProteinBackboneAroundDNA
~DesignRepackMover() :
protocols::simple_moves::DesignRepackMover
~DesignTask() :
protocols::flxbb::DesignTask
~DesignTask_Layer() :
protocols::flxbb::DesignTask_Layer
~DesignTask_Normal() :
protocols::flxbb::DesignTask_Normal
~DesignVsNativeComparison() :
protocols::enzdes::DesignVsNativeComparison
~DetectProteinLigandInterface() :
protocols::enzdes::DetectProteinLigandInterface
~DGBindOptEData() :
protocols::optimize_weights::DGBindOptEData
~DiffAtomSasaFilter() :
protocols::enzdes::DiffAtomSasaFilter
~DimerPairing() :
protocols::fldsgn::topology::DimerPairing
~DiscreteRandomizer() :
protocols::genetic_algorithm::DiscreteRandomizer
~DisulfideEntropyFilter() :
protocols::simple_filters::DisulfideEntropyFilter
~DisulfideFilter() :
protocols::protein_interface_design::filters::DisulfideFilter
~DisulfideInsertionMover() :
protocols::simple_moves::DisulfideInsertionMover
~DisulfideMover() :
protocols::protein_interface_design::movers::DisulfideMover
~DisulfJumpClaimer() :
protocols::topology_broker::DisulfJumpClaimer
~DiversifyCrmsdByClustering() :
protocols::frag_picker::DiversifyCrmsdByClustering
~DiversifyCrmsdSelector() :
protocols::frag_picker::DiversifyCrmsdSelector
~DiversifyDihedralsSelector() :
protocols::frag_picker::DiversifyDihedralsSelector
~DiversifyStoredRBConfs() :
protocols::enzdes::DiversifyStoredRBConfs
~DnaChains() :
protocols::dna::DnaChains
~DnaDesignDef() :
protocols::dna::DnaDesignDef
~DnaInterfaceFinder() :
protocols::dna::DnaInterfaceFinder
~DnaInterfaceMinMover() :
protocols::dna::DnaInterfaceMinMover
~DnaInterfaceMultiStateDesign() :
protocols::dna::DnaInterfaceMultiStateDesign
~DnaInterfacePacker() :
protocols::dna::DnaInterfacePacker
~DNAParameters() :
protocols::dna::DNAParameters
~DnaPosition() :
protocols::dna::DnaPosition
~DockAndRetrieveSidechains() :
protocols::protein_interface_design::movers::DockAndRetrieveSidechains
~DockDesignFilterFactory() :
protocols::protein_interface_design::DockDesignFilterFactory
~DockingEnsemble() :
protocols::docking::DockingEnsemble
~DockingEnsemblePrepackProtocol() :
protocols::docking::DockingEnsemblePrepackProtocol
~DockingHighRes() :
protocols::docking::DockingHighRes
~DockingHighResFilter() :
protocols::docking::DockingHighResFilter
~DockingHighResLegacy() :
protocols::docking::DockingHighResLegacy
~DockingInitialPerturbation() :
protocols::docking::DockingInitialPerturbation
~DockingLowRes() :
protocols::docking::DockingLowRes
~DockingLowResEnsemble() :
protocols::docking::DockingLowResEnsemble
~DockingLowResFilter() :
protocols::docking::DockingLowResFilter
~DockingNoRepack1() :
protocols::toolbox::task_operations::DockingNoRepack1
~DockingNoRepack2() :
protocols::toolbox::task_operations::DockingNoRepack2
~DockingPrepackProtocol() :
protocols::docking::DockingPrepackProtocol
~DockingProtocol() :
protocols::docking::DockingProtocol
~DockingSlideIntoContact() :
protocols::docking::DockingSlideIntoContact
~DockMCMCycle() :
protocols::docking::DockMCMCycle
~DockMCMProtocol() :
protocols::docking::DockMCMProtocol
~DockMinMover() :
protocols::docking::DockMinMover
~DockTaskFactory() :
protocols::docking::DockTaskFactory
~DockWithHotspotMover() :
protocols::protein_interface_design::movers::DockWithHotspotMover
~DofClaim() :
protocols::topology_broker::claims::DofClaim
~DOFHistogramRecorder() :
protocols::simple_moves::DOFHistogramRecorder
~DofUnlock() :
protocols::environment::DofUnlock
~DomainAssembly() :
protocols::abinitio::DomainAssembly
~DomainInterfaceFilter() :
protocols::simple_filters::DomainInterfaceFilter
~DoubleDenseIGRepacker() :
protocols::pack_daemon::DoubleDenseIGRepacker
~DoubleLayerKinematicAbinitio() :
protocols::abinitio::DoubleLayerKinematicAbinitio
~DownstreamAlgorithm() :
protocols::match::downstream::DownstreamAlgorithm
~DownstreamBuilder() :
protocols::match::downstream::DownstreamBuilder
~DownstreamCoordinateKinemageWriter() :
protocols::match::output::DownstreamCoordinateKinemageWriter
~DownstreamRMSEvaluator() :
protocols::match::output::DownstreamRMSEvaluator
~DsspDesignOperation() :
protocols::toolbox::task_operations::DsspDesignOperation
~DsspMover() :
protocols::moves::DsspMover
~DualMonteCarlo() :
protocols::moves::DualMonteCarlo
~DummyClass() :
protocols::toolbox::DummyClass
~DumpPdb() :
protocols::simple_moves::DumpPdb
~DynamicAggregateFunction() :
protocols::pack_daemon::DynamicAggregateFunction
~EdgeStandScore() :
protocols::sic_dock::EdgeStandScore
~EllipsoidalRandomizationMover() :
protocols::docking::EllipsoidalRandomizationMover
~Embedding() :
protocols::membrane::geometry::Embedding
~EmbeddingDef() :
protocols::membrane::geometry::EmbeddingDef
~EndPoint() :
protocols::wum2::EndPoint
~EnergyCutRotamerTrialsMinMover() :
protocols::simple_moves::EnergyCutRotamerTrialsMinMover
~EnergyCutRotamerTrialsMover() :
protocols::simple_moves::EnergyCutRotamerTrialsMover
~EnergyPerResidueFilter() :
protocols::simple_filters::EnergyPerResidueFilter
~Entity() :
protocols::genetic_algorithm::Entity
~EntityCorrespondence() :
protocols::pack_daemon::EntityCorrespondence
~EntityElement() :
protocols::genetic_algorithm::EntityElement
~EntityElementCreator() :
protocols::genetic_algorithm::EntityElementCreator
~EntityElementFactory() :
protocols::genetic_algorithm::EntityElementFactory
~EntityFunc() :
protocols::pack_daemon::EntityFunc
~EntityFuncExpressionCreator() :
protocols::pack_daemon::EntityFuncExpressionCreator
~EntityRandomizer() :
protocols::genetic_algorithm::EntityRandomizer
~EnvClaim() :
protocols::environment::claims::EnvClaim
~EnvClaimBroker() :
protocols::environment::EnvClaimBroker
~Environment() :
protocols::environment::Environment
~EnvLabelSelector() :
protocols::environment::claims::EnvLabelSelector
~EnvMover() :
protocols::environment::EnvMover
~EnzConstraintIO() :
protocols::toolbox::match_enzdes_util::EnzConstraintIO
~EnzConstraintParameters() :
protocols::toolbox::match_enzdes_util::EnzConstraintParameters
~EnzCstTemplateRes() :
protocols::toolbox::match_enzdes_util::EnzCstTemplateRes
~EnzCstTemplateResAtoms() :
protocols::toolbox::match_enzdes_util::EnzCstTemplateResAtoms
~EnzCstTemplateResCache() :
protocols::toolbox::match_enzdes_util::EnzCstTemplateResCache
~EnzdesCacheableObserver() :
protocols::toolbox::match_enzdes_util::EnzdesCacheableObserver
~EnzdesConstraintReporter() :
protocols::enzdes::EnzdesConstraintReporter
~EnzdesCstCache() :
protocols::toolbox::match_enzdes_util::EnzdesCstCache
~EnzdesCstParamCache() :
protocols::toolbox::match_enzdes_util::EnzdesCstParamCache
~EnzdesFixBBProtocol() :
protocols::enzdes::EnzdesFixBBProtocol
~EnzdesFlexBBProtocol() :
protocols::enzdes::EnzdesFlexBBProtocol
~EnzdesFlexibleRegion() :
protocols::enzdes::EnzdesFlexibleRegion
~EnzdesJobInputter() :
protocols::enzdes::EnzdesJobInputter
~EnzdesJobOutputter() :
protocols::enzdes::EnzdesJobOutputter
~EnzdesLoopInfo() :
protocols::toolbox::match_enzdes_util::EnzdesLoopInfo
~EnzdesLoopsFile() :
protocols::toolbox::match_enzdes_util::EnzdesLoopsFile
~EnzdesScorefileFilter() :
protocols::enzdes::EnzdesScorefileFilter
~EnzdesSeqRecoveryCache() :
protocols::toolbox::match_enzdes_util::EnzdesSeqRecoveryCache
~EnzRepackMinimize() :
protocols::enzdes::EnzRepackMinimize
~EnzScoreFilter() :
protocols::enzdes::EnzScoreFilter
~EulerAngles() :
protocols::stepwise::sampler::rigid_body::EulerAngles
~EvaluatedArchive() :
protocols::jd2::archive::EvaluatedArchive
~EvaluatedTrialMover() :
protocols::simple_filters::EvaluatedTrialMover
~EvaluatorCreator() :
protocols::evaluation::EvaluatorCreator
~EvaluatorFactory() :
protocols::evaluation::EvaluatorFactory
~Exemplar() :
protocols::cluster::Exemplar
~ExpExpression() :
protocols::pack_daemon::ExpExpression
~ExpiryFilter() :
protocols::simple_filters::ExpiryFilter
~ExposedHydrophobicsFilter() :
protocols::denovo_design::filters::ExposedHydrophobicsFilter
~ExternalEvaluator() :
protocols::simple_filters::ExternalEvaluator
~ExternalGeomSampler() :
protocols::toolbox::match_enzdes_util::ExternalGeomSampler
~ExtractAsymmetricPoseMover() :
protocols::simple_moves::symmetry::ExtractAsymmetricPoseMover
~ExtractAsymmetricUnitMover() :
protocols::simple_moves::symmetry::ExtractAsymmetricUnitMover
~ExtraScoreEvaluatorCreator() :
protocols::simple_filters::ExtraScoreEvaluatorCreator
~ExtraThreadingMover() :
protocols::comparative_modeling::ExtraThreadingMover
~FaDockingSlideIntoContact() :
protocols::docking::FaDockingSlideIntoContact
~FASelectSlidingWindowLoopClosure() :
protocols::loops::loop_closure::ccd::FASelectSlidingWindowLoopClosure
~FastaInputter() :
protocols::inputter::FastaInputter
~FASTER_IG_Repacker() :
protocols::pack_daemon::FASTER_IG_Repacker
~FastForwardToNextResidueAlternative() :
protocols::stepwise::screener::FastForwardToNextResidueAlternative
~FastForwardToNextRigidBody() :
protocols::stepwise::screener::FastForwardToNextRigidBody
~FastLinearFunc() :
protocols::moves::FastLinearFunc
~FastRelax() :
protocols::relax::FastRelax
~FaSymDockingSlideTogether() :
protocols::simple_moves::symmetry::FaSymDockingSlideTogether
~FavorNativeResidue() :
protocols::protein_interface_design::FavorNativeResidue
~FavorNativeResiduePreCycle() :
protocols::protein_interface_design::movers::FavorNativeResiduePreCycle
~FavorNonNativeResidue() :
protocols::protein_interface_design::FavorNonNativeResidue
~FavorNonNativeResiduePreCycle() :
protocols::protein_interface_design::movers::FavorNonNativeResiduePreCycle
~FavorSequenceProfile() :
protocols::simple_moves::FavorSequenceProfile
~FavorSymmetricSequence() :
protocols::simple_moves::FavorSymmetricSequence
~FeaturesReporter() :
protocols::features::FeaturesReporter
~FeaturesReporterCreator() :
protocols::features::FeaturesReporterCreator
~FeaturesReporterFactory() :
protocols::features::FeaturesReporterFactory
~FileExistFilter() :
protocols::simple_filters::FileExistFilter
~FileJobOutputter() :
protocols::jd2::FileJobOutputter
~FileRemoveFilter() :
protocols::simple_filters::FileRemoveFilter
~FileSystemJobDistributor() :
protocols::jd2::FileSystemJobDistributor
~Filter() :
protocols::filters::Filter
,
protocols::pose_selectors::Filter
~FilterCollection() :
protocols::filters::FilterCollection
~FilterCreator() :
protocols::filters::FilterCreator
~Filterer_Count() :
protocols::stepwise::modeler::rna::Filterer_Count
~FilterFactory() :
protocols::filters::FilterFactory
~FilterMover() :
protocols::moves::FilterMover
~FilterReporterMover() :
protocols::moves::FilterReporterMover
~FilterScanFilter() :
protocols::protein_interface_design::filters::FilterScanFilter
~FilterStructs() :
protocols::flxbb::FilterStructs
~FilterStructs_Packstat() :
protocols::flxbb::FilterStructs_Packstat
~FilterStructs_TotalCharge() :
protocols::flxbb::FilterStructs_TotalCharge
~FinalMinimizer() :
protocols::ligand_docking::FinalMinimizer
~FindConsensusSequence() :
protocols::simple_moves::FindConsensusSequence
~FingerprintBase() :
protocols::pockets::FingerprintBase
~FingerprintMultifunc() :
protocols::pockets::FingerprintMultifunc
~FitnessFunction() :
protocols::genetic_algorithm::FitnessFunction
~FitSimpleHelix() :
protocols::helical_bundle::FitSimpleHelix
~FitSimpleHelixMultiFunc() :
protocols::helical_bundle::FitSimpleHelixMultiFunc
~FixTemplateJumpSetup() :
protocols::abinitio::FixTemplateJumpSetup
~FlexbbEdge() :
protocols::flexpack::interaction_graph::FlexbbEdge
~FlexbbInteractionGraph() :
protocols::flexpack::interaction_graph::FlexbbInteractionGraph
~FlexbbNode() :
protocols::flexpack::interaction_graph::FlexbbNode
~FlexbbRotamerSet() :
protocols::flexpack::rotamer_set::FlexbbRotamerSet
~FlexbbRotamerSets() :
protocols::flexpack::rotamer_set::FlexbbRotamerSets
~FlexbbSimAnnealer() :
protocols::flexpack::annealer::FlexbbSimAnnealer
~FlexPacker() :
protocols::flexpack::FlexPacker
~FlexPepDockingAbInitio() :
protocols::flexpep_docking::FlexPepDockingAbInitio
~FlexPepDockingLowRes() :
protocols::flexpep_docking::FlexPepDockingLowRes
~FlexPepDockingProtocol() :
protocols::flexpep_docking::FlexPepDockingProtocol
~FlipMover() :
protocols::membrane::FlipMover
~FloatingResonance() :
protocols::noesy_assign::FloatingResonance
~FloppyTailMover() :
protocols::floppy_tail::FloppyTailMover
~FlxbbDesign() :
protocols::flxbb::FlxbbDesign
~FlxbbDesignPack() :
protocols::flxbb::FlxbbDesignPack
~FNatFilter() :
protocols::protein_interface_design::filters::FNatFilter
~FoldConstraints() :
protocols::abinitio::FoldConstraints
~FoldTreeFromLoops() :
protocols::loops::FoldTreeFromLoops
~ForceDisulfidesMover() :
protocols::simple_moves::ForceDisulfidesMover
~FormatStringOutputter() :
protocols::outputter::FormatStringOutputter
~FourAtomsConstraintData() :
protocols::frag_picker::scores::FourAtomsConstraintData
~FragInsertAndAlignMover() :
protocols::rbsegment_relax::FragInsertAndAlignMover
~FragmentAllAtomCrmsd() :
protocols::frag_picker::scores::FragmentAllAtomCrmsd
~FragmentCandidate() :
protocols::frag_picker::FragmentCandidate
~FragmentChunkCrms() :
protocols::frag_picker::scores::FragmentChunkCrms
~FragmentClaimer() :
protocols::topology_broker::FragmentClaimer
~FragmentCM() :
protocols::abinitio::abscript::FragmentCM
~FragmentCost() :
protocols::simple_moves::FragmentCost
~FragmentCrmsd() :
protocols::frag_picker::scores::FragmentCrmsd
~FragmentCrmsdResDepth() :
protocols::frag_picker::scores::FragmentCrmsdResDepth
~FragmentDME() :
protocols::frag_picker::scores::FragmentDME
~FragmentJumpClaimer() :
protocols::topology_broker::FragmentJumpClaimer
~FragmentJumpCM() :
protocols::abinitio::abscript::FragmentJumpCM
~FragmentLibrary() :
protocols::farna::FragmentLibrary
~FragmentLookupFilter() :
protocols::indexed_structure_store::filters::FragmentLookupFilter
~FragmentMover() :
protocols::simple_moves::FragmentMover
~FragmentPicker() :
protocols::frag_picker::FragmentPicker
~FragmentReader() :
protocols::jd2::parser::FragmentReader
~FragmentSampler() :
protocols::abinitio::FragmentSampler
~FragmentScoreManager() :
protocols::frag_picker::scores::FragmentScoreManager
~FragmentSelectingRule() :
protocols::frag_picker::FragmentSelectingRule
~FragQualCalculator() :
protocols::toolbox::pose_metric_calculators::FragQualCalculator
~FragQualFilter() :
protocols::fldsgn::filters::FragQualFilter
~FragSetLoader() :
protocols::jd2::parser::FragSetLoader
~FromScratchMover() :
protocols::stepwise::monte_carlo::mover::FromScratchMover
~FullatomRelaxMover() :
protocols::surface_docking::FullatomRelaxMover
~FullAtomRNA_Fragments() :
protocols::farna::FullAtomRNA_Fragments
~FullChiSampleSet() :
protocols::match::upstream::FullChiSampleSet
~FunGroupTK() :
protocols::kinmatch::FunGroupTK
~GeneralizedKIC() :
protocols::generalized_kinematic_closure::GeneralizedKIC
~GeneralizedKICfilter() :
protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter
~GeneralizedKICperturber() :
protocols::generalized_kinematic_closure::perturber::GeneralizedKICperturber
~GeneralizedKICselector() :
protocols::generalized_kinematic_closure::selector::GeneralizedKICselector
~GenerateStoredRBConfs() :
protocols::enzdes::GenerateStoredRBConfs
~GenericMonteCarloMover() :
protocols::simple_moves::GenericMonteCarloMover
~GeneticAlgorithm() :
protocols::genetic_algorithm::GeneticAlgorithm
~GeneticAlgorithmBase() :
protocols::genetic_algorithm::GeneticAlgorithmBase
~GeometricFunc() :
protocols::moves::GeometricFunc
~GeometricSolvationFeatures() :
protocols::features::GeometricSolvationFeatures
~GeometricSolvationFeaturesCreator() :
protocols::features::GeometricSolvationFeaturesCreator
~GeometryFilter() :
protocols::simple_filters::GeometryFilter
~GeomSampleInfo() :
protocols::toolbox::match_enzdes_util::GeomSampleInfo
~GetRBDOFValues() :
protocols::matdes::GetRBDOFValues
~GraftCDRLoopsProtocol() :
protocols::antibody::GraftCDRLoopsProtocol
~GraftedStemOptimizer() :
protocols::antibody::GraftedStemOptimizer
~GraftMover() :
protocols::antibody_legacy::GraftMover
~GraftMoverBase() :
protocols::grafting::GraftMoverBase
~GraftOneCDRLoop() :
protocols::antibody::GraftOneCDRLoop
~GreedyOptMutationMover() :
protocols::design_opt::GreedyOptMutationMover
~GreenPacker() :
protocols::simple_moves::GreenPacker
~GridBase() :
protocols::qsar::scoring_grid::GridBase
~GridCreator() :
protocols::qsar::scoring_grid::GridCreator
~GridFactory() :
protocols::qsar::scoring_grid::GridFactory
~GridInitMover() :
protocols::qsar::scoring_grid::GridInitMover
~GridSearchIterator() :
protocols::scoring::methods::pcs2::GridSearchIterator
,
protocols::scoring::methods::pcs::GridSearchIterator
~GridSearchIterator_Ts1() :
protocols::scoring::methods::pcsTs1::GridSearchIterator_Ts1
~GridSearchIterator_Ts2() :
protocols::scoring::methods::pcsTs2::GridSearchIterator_Ts2
~GridSearchIterator_Ts3() :
protocols::scoring::methods::pcsTs3::GridSearchIterator_Ts3
~GridSearchIterator_Ts4() :
protocols::scoring::methods::pcsTs4::GridSearchIterator_Ts4
~GridSearchIteratorCA() :
protocols::scoring::methods::pcs2::GridSearchIteratorCA
~GroupDiscriminator() :
protocols::simple_moves::GroupDiscriminator
~GrowLeft() :
protocols::forge::build::GrowLeft
~GrowLigand() :
protocols::ligand_docking::GrowLigand
~GrowPeptides() :
protocols::seeded_abinitio::GrowPeptides
~GrowRight() :
protocols::forge::build::GrowRight
~GuardedLoopsFromFile() :
protocols::loops::GuardedLoopsFromFile
~GunnCost() :
protocols::frag_picker::scores::GunnCost
,
protocols::simple_moves::GunnCost
~GunnCostScore() :
protocols::frag_picker::scores::GunnCostScore
~H3CterInsert() :
protocols::antibody::H3CterInsert
~H3PerturbCCD() :
protocols::antibody::H3PerturbCCD
~H3RefineCCD() :
protocols::antibody::H3RefineCCD
~HamiltonianExchange() :
protocols::canonical_sampling::HamiltonianExchange
~HbaGrid() :
protocols::qsar::scoring_grid::HbaGrid
~HbdGrid() :
protocols::qsar::scoring_grid::HbdGrid
~HBondAcceptorFilter() :
protocols::ligand_docking::HBondAcceptorFilter
~HBondDonorFilter() :
protocols::ligand_docking::HBondDonorFilter
~HBondFeatures() :
protocols::features::HBondFeatures
~HBondFeaturesCreator() :
protocols::features::HBondFeaturesCreator
~HBondParameterFeatures() :
protocols::features::HBondParameterFeatures
~HBondParameterFeaturesCreator() :
protocols::features::HBondParameterFeaturesCreator
~HbondsToAtomFilter() :
protocols::protein_interface_design::filters::HbondsToAtomFilter
~HbondsToResidueFilter() :
protocols::protein_interface_design::filters::HbondsToResidueFilter
~HbsPatcher() :
protocols::simple_moves::hbs::HbsPatcher
~HeavyAtomFilter() :
protocols::ligand_docking::HeavyAtomFilter
~HeavyAtomNormalization() :
protocols::qsar::scoring_grid::HeavyAtomNormalization
~HelicalFragment() :
protocols::features::helixAssembly::HelicalFragment
~Helix() :
protocols::fldsgn::topology::Helix
~HelixBundleFeaturesCreator() :
protocols::features::helixAssembly::HelixBundleFeaturesCreator
~HelixCapFeatures() :
protocols::features::HelixCapFeatures
~HelixCapFeaturesCreator() :
protocols::features::HelixCapFeaturesCreator
~HelixKinkFilter() :
protocols::fldsgn::filters::HelixKinkFilter
~HelixNCapperMover() :
protocols::helix_capper::HelixNCapperMover
~HelixPairing() :
protocols::fldsgn::topology::HelixPairing
~HelixPairingFilter() :
protocols::fldsgn::filters::HelixPairingFilter
~HelixPairingSet() :
protocols::fldsgn::topology::HelixPairingSet
~HelixScore() :
protocols::sic_dock::HelixScore
~HighResDocker() :
protocols::ligand_docking::HighResDocker
~Histogram() :
protocols::canonical_sampling::BiasEnergy::Histogram< T >
~HitHasher() :
protocols::match::HitHasher
~HitNeighborFinder() :
protocols::match::HitNeighborFinder
~HolesFilter() :
protocols::simple_filters::HolesFilter
~HotspotDisjointedFoldTreeMover() :
protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover
~HotspotHasherMover() :
protocols::protein_interface_design::movers::HotspotHasherMover
~HotspotStub() :
protocols::hotspot_hashing::HotspotStub
~HotspotStubSet() :
protocols::hotspot_hashing::HotspotStubSet
~HPatchCalculator() :
protocols::toolbox::pose_metric_calculators::HPatchCalculator
~HSPairPotential() :
protocols::fldsgn::potentials::sspot::HSPairPotential
~HSSTriplet() :
protocols::fldsgn::topology::HSSTriplet
~HSSTripletFilter() :
protocols::fldsgn::filters::HSSTripletFilter
~HSSTripletSet() :
protocols::fldsgn::topology::HSSTripletSet
~HydrophobicityProfileSimilarity() :
protocols::frag_picker::scores::HydrophobicityProfileSimilarity
~HydrophobicitySimilarity() :
protocols::frag_picker::scores::HydrophobicitySimilarity
~IfMover() :
protocols::moves::IfMover
~IfThenFilter() :
protocols::filters::IfThenFilter
~ImplicitFastClashCheck() :
protocols::scoring::ImplicitFastClashCheck
~ImportUnboundRotamersOperation() :
protocols::toolbox::task_operations::ImportUnboundRotamersOperation
~IndependentLoopMover() :
protocols::loops::loop_mover::IndependentLoopMover
~InitializeByBins() :
protocols::simple_moves::bin_transitions::InitializeByBins
~InnerJob() :
protocols::jd2::InnerJob
~InnerMultiThreadingJob() :
protocols::jd2::InnerMultiThreadingJob
~InputStreamStepWiseSampler() :
protocols::stepwise::sampler::input_streams::InputStreamStepWiseSampler
~InputStreamWithResidueInfo() :
protocols::stepwise::modeler::protein::InputStreamWithResidueInfo
~Inputter() :
protocols::inputter::Inputter
~InputterStream() :
protocols::inputter::InputterStream
~InsertChunkMover() :
protocols::hybridization::InsertChunkMover
~InsertPoseIntoPoseMover() :
protocols::grafting::simple_movers::InsertPoseIntoPoseMover
~InSetExpression() :
protocols::pack_daemon::InSetExpression
~IntegrationTestBreaker() :
protocols::stepwise::screener::IntegrationTestBreaker
~InteractingRotamerExplosion() :
protocols::toolbox::task_operations::InteractingRotamerExplosion
~InterfaceAnalyzerMover() :
protocols::analysis::InterfaceAnalyzerMover
~InterfaceBindingEnergyDensityFilter() :
protocols::simple_filters::InterfaceBindingEnergyDensityFilter
~InterfaceBuilder() :
protocols::ligand_docking::InterfaceBuilder
~InterfaceBuilderLoader() :
protocols::ligand_docking::InterfaceBuilderLoader
~InterfaceFeatures() :
protocols::features::InterfaceFeatures
~InterfaceFeaturesCreator() :
protocols::features::InterfaceFeaturesCreator
~InterfaceHolesFilter() :
protocols::protein_interface_design::filters::InterfaceHolesFilter
~InterfacePackingFilter() :
protocols::matdes::InterfacePackingFilter
~InterfaceRecapitulationMover() :
protocols::protein_interface_design::movers::InterfaceRecapitulationMover
~InterfaceSasaFilter() :
protocols::simple_filters::InterfaceSasaFilter
~InterfaceScoreCalculator() :
protocols::ligand_docking::InterfaceScoreCalculator
~InterfaceSidechainMinMover() :
protocols::docking::InterfaceSidechainMinMover
~InterfaceTaskOperation() :
protocols::toolbox::task_operations::InterfaceTaskOperation
~InterGroupNeighborsCalculator() :
protocols::toolbox::pose_metric_calculators::InterGroupNeighborsCalculator
~InterlockAroma() :
protocols::flxbb::InterlockAroma
~InterlockingAromaFilter() :
protocols::fldsgn::filters::InterlockingAromaFilter
~InternalWorkingResidueParameter() :
protocols::stepwise::modeler::rna::InternalWorkingResidueParameter
~InterRepeatContactFilter() :
protocols::simple_filters::InterRepeatContactFilter
~Interval() :
protocols::forge::build::Interval
~IntraRepeatContactFilter() :
protocols::simple_filters::IntraRepeatContactFilter
~InverseRotamersRCG() :
protocols::forge::constraints::InverseRotamersRCG
~InvGeometricFunc() :
protocols::moves::InvGeometricFunc
~InvrotCollector() :
protocols::toolbox::match_enzdes_util::InvrotCollector
~InvrotTarget() :
protocols::toolbox::match_enzdes_util::InvrotTarget
~InvrotTree() :
protocols::toolbox::match_enzdes_util::InvrotTree
~InvrotTreeNode() :
protocols::toolbox::match_enzdes_util::InvrotTreeNode
~InvrotTreeNodeBase() :
protocols::toolbox::match_enzdes_util::InvrotTreeNodeBase
~InvrotTreeRCG() :
protocols::forge::constraints::InvrotTreeRCG
~IRmsdFilter() :
protocols::protein_interface_design::filters::IRmsdFilter
~IteratedConvergenceMover() :
protocols::moves::IteratedConvergenceMover
~IterativeBase() :
protocols::abinitio::IterativeBase
~IterativeOptEDriver() :
protocols::optimize_weights::IterativeOptEDriver
~IterativeVectorExpression() :
protocols::pack_daemon::IterativeVectorExpression
~JD2ResourceManager() :
protocols::jd2::JD2ResourceManager
~JD2ResourceManagerCreator() :
protocols::jd2::JD2ResourceManagerCreator
~JD2ResourceManagerJobInputter() :
protocols::jd2::JD2ResourceManagerJobInputter
~Job() :
protocols::jd2::Job
~JobDataFeatures() :
protocols::features::JobDataFeatures
~JobDataFeaturesCreator() :
protocols::features::JobDataFeaturesCreator
~JobDistributor() :
protocols::jd2::JobDistributor
~JobInputter() :
protocols::jd2::JobInputter
~JobInputterCreator() :
protocols::jd2::JobInputterCreator
~JobInputterFactory() :
protocols::jd2::JobInputterFactory
~JobOutputter() :
protocols::jd2::JobOutputter
~JobOutputterCreator() :
protocols::jd2::JobOutputterCreator
~JobOutputterFactory() :
protocols::jd2::JobOutputterFactory
~JointScore() :
protocols::sic_dock::JointScore
~JointSequenceOperation() :
protocols::toolbox::task_operations::JointSequenceOperation
~JScoreEvaluator() :
protocols::simple_filters::JScoreEvaluator
~JScoreEvaluatorCreator() :
protocols::simple_filters::JScoreEvaluatorCreator
~JSON_RPC() :
protocols::rpc::JSON_RPC
~Jump_point() :
protocols::stepwise::modeler::rna::Jump_point
~JumpNrEvaluatorCreator() :
protocols::simple_filters::JumpNrEvaluatorCreator
~JumpOutMover() :
protocols::moves::JumpOutMover
~JumpSample() :
protocols::jumping::JumpSample
~JumpSelector() :
protocols::jumping::JumpSelector
~JumpStepWiseSampler() :
protocols::stepwise::sampler::JumpStepWiseSampler
~KCluster() :
protocols::toolbox::KCluster
~KClusterData() :
protocols::toolbox::KClusterData
~KClusterElement() :
protocols::toolbox::KClusterElement
~KeepRegionMover() :
protocols::grafting::simple_movers::KeepRegionMover
~KicMover() :
protocols::kinematic_closure::KicMover
~KinematicAbinitio() :
protocols::abinitio::KinematicAbinitio
~KinematicControl() :
protocols::abinitio::KinematicControl
~KinematicMover() :
protocols::loops::loop_closure::kinematic_closure::KinematicMover
~KinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::KinematicPerturber
~KinematicTaskControl() :
protocols::abinitio::KinematicTaskControl
~KinematicWrapper() :
protocols::loops::loop_closure::kinematic_closure::KinematicWrapper
~LabelResonance() :
protocols::noesy_assign::LabelResonance
~LayerDesignOperation() :
protocols::flxbb::LayerDesignOperation
~LazySilentFileJobInputter() :
protocols::jd2::LazySilentFileJobInputter
~LazySortedVector1() :
protocols::frag_picker::LazySortedVector1< T, StrictWeakOrdering >
~LHRepulsiveRamp() :
protocols::antibody::LHRepulsiveRamp
~LHRepulsiveRampLegacy() :
protocols::antibody::LHRepulsiveRampLegacy
~LHSnugFitLegacy() :
protocols::antibody::LHSnugFitLegacy
~LigandArea() :
protocols::ligand_docking::LigandArea
~LigandAreaLoader() :
protocols::ligand_docking::LigandAreaLoader
~LigandBaseProtocol() :
protocols::ligand_docking::LigandBaseProtocol
~LigandConformer() :
protocols::toolbox::match_enzdes_util::LigandConformer
~LigandConformerBuilder() :
protocols::match::downstream::LigandConformerBuilder
~LigandDesign() :
protocols::ligand_docking::LigandDesign
~LigandDockMain() :
protocols::ligand_docking::LigandDockMain
~LigandDockProtocol() :
protocols::ligand_docking::LigandDockProtocol
~LigandMotifSearch() :
protocols::motifs::LigandMotifSearch
~LigandPropertyScore() :
protocols::qsar::scoring_grid::LigandPropertyScore
~LigBurialFilter() :
protocols::enzdes::LigBurialFilter
~LigDSasaFilter() :
protocols::enzdes::LigDSasaFilter
~LigInterfaceEnergyFilter() :
protocols::enzdes::LigInterfaceEnergyFilter
~LimitAromaChi2_RotamerSetOperation() :
protocols::toolbox::task_operations::LimitAromaChi2_RotamerSetOperation
~LimitAromaChi2Operation() :
protocols::toolbox::task_operations::LimitAromaChi2Operation
~LimitHitsPerRotamerFilter() :
protocols::match::output::LimitHitsPerRotamerFilter
~LinearFunc() :
protocols::moves::LinearFunc
~LinkerScore() :
protocols::sic_dock::LinkerScore
~LinkResidues() :
protocols::toolbox::task_operations::LinkResidues
~LipoFileLoader() :
protocols::membrane::io::LipoFileLoader
~LipoFileOptions() :
protocols::membrane::io::LipoFileOptions
~LnExpression() :
protocols::pack_daemon::LnExpression
~LoadUnboundRotMover() :
protocols::simple_moves::LoadUnboundRotMover
~LocalInserter() :
protocols::loophash::LocalInserter
~LoggedFragmentMover() :
protocols::simple_moves::LoggedFragmentMover
~LogicalSelector() :
protocols::pose_selectors::LogicalSelector
~Loop() :
protocols::fldsgn::topology::Loop
,
protocols::loops::Loop
~LoopAnalyzerMover() :
protocols::analysis::LoopAnalyzerMover
~LoopAnchorFeatures() :
protocols::features::LoopAnchorFeatures
~LoopAnchorFeaturesCreator() :
protocols::features::LoopAnchorFeaturesCreator
~LoopBuilder() :
protocols::loop_modeling::LoopBuilder
~LoopClosure() :
protocols::loops::loop_closure::ccd::LoopClosure
~LoopCM() :
protocols::loops::loop_mover::LoopCM
~LoopFinder() :
protocols::protein_interface_design::movers::LoopFinder
~LoopHashDiversifier() :
protocols::loophash::LoopHashDiversifier
~LoopHashLibraryLoader() :
protocols::loophash::LoopHashLibraryLoader
~LoopHashLibraryOptions() :
protocols::loophash::LoopHashLibraryOptions
~LoopHashLibraryOptionsCreator() :
protocols::loophash::LoopHashLibraryOptionsCreator
~LoopHashMoverWrapper() :
protocols::loophash::LoopHashMoverWrapper
~LoopHashSampler() :
protocols::loophash::LoopHashSampler
~LoopJumpFoldCst() :
protocols::abinitio::LoopJumpFoldCst
~LoopLengthChange() :
protocols::protein_interface_design::movers::LoopLengthChange
~LoopModeler() :
protocols::loop_modeling::LoopModeler
~LoopMover() :
protocols::loops::loop_mover::LoopMover
~LoopMover_Perturb_CCD() :
protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCD
~LoopMover_Perturb_CCDCreator() :
protocols::loops::loop_mover::perturb::LoopMover_Perturb_CCDCreator
~LoopMover_Perturb_KIC() :
protocols::loops::loop_mover::perturb::LoopMover_Perturb_KIC
~LoopMover_Perturb_KICCreator() :
protocols::loops::loop_mover::perturb::LoopMover_Perturb_KICCreator
~LoopMover_Perturb_QuickCCD() :
protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD
~LoopMover_Perturb_QuickCCD_MovesCreator() :
protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCD_MovesCreator
~LoopMover_Perturb_QuickCCDCreator() :
protocols::loops::loop_mover::perturb::LoopMover_Perturb_QuickCCDCreator
~LoopMover_Refine_Backrub() :
protocols::loops::loop_mover::refine::LoopMover_Refine_Backrub
~LoopMover_Refine_BackrubCreator() :
protocols::loops::loop_mover::refine::LoopMover_Refine_BackrubCreator
~LoopMover_Refine_CCD() :
protocols::loops::loop_mover::refine::LoopMover_Refine_CCD
~LoopMover_Refine_CCDCreator() :
protocols::loops::loop_mover::refine::LoopMover_Refine_CCDCreator
~LoopMover_Refine_KIC() :
protocols::loops::loop_mover::refine::LoopMover_Refine_KIC
~LoopMover_Refine_KICCreator() :
protocols::loops::loop_mover::refine::LoopMover_Refine_KICCreator
~LoopMover_SlidingWindowCreator() :
protocols::loop_build::LoopMover_SlidingWindowCreator
~LoopMoverFactory() :
protocols::loops::LoopMoverFactory
~LoopMoverFromCommandLine() :
protocols::protein_interface_design::movers::LoopMoverFromCommandLine
~LoopOver() :
protocols::protein_interface_design::movers::LoopOver
~LoopProtocol() :
protocols::loop_modeling::LoopProtocol
~LoopRebuild() :
protocols::LoopRebuild
~LoopRefineInnerCycle() :
protocols::loops::loop_mover::refine::LoopRefineInnerCycle
~LoopRefineInnerCycleContainer() :
protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainer
~LoopRefineInnerCycleContainerCreator() :
protocols::loops::loop_mover::refine::LoopRefineInnerCycleContainerCreator
~LoopRefineInnerCycleFactory() :
protocols::loops::loop_mover::refine::LoopRefineInnerCycleFactory
~LoopRelaxMover() :
protocols::comparative_modeling::LoopRelaxMover
~LoopRemodel() :
protocols::protein_interface_design::movers::LoopRemodel
~Loops() :
protocols::loops::Loops
~LoopsDatabaseDefiner() :
protocols::loops::loops_definers::LoopsDatabaseDefiner
~LoopsDatabaseDefinerCreator() :
protocols::loops::loops_definers::LoopsDatabaseDefinerCreator
~LoopsDefiner() :
protocols::loops::loops_definers::LoopsDefiner
~LoopsDefinerCreator() :
protocols::loops::loops_definers::LoopsDefinerCreator
~LoopsDefinerFactory() :
protocols::loops::loops_definers::LoopsDefinerFactory
~LoopsDefinerLoader() :
protocols::loops::loops_definers::LoopsDefinerLoader
~LoopsExplicitDefiner() :
protocols::loops::loops_definers::LoopsExplicitDefiner
~LoopsExplicitDefinerCreator() :
protocols::loops::loops_definers::LoopsExplicitDefinerCreator
~LoopsFileData() :
protocols::loops::LoopsFileData
~LoopsFileDefiner() :
protocols::loops::loops_definers::LoopsFileDefiner
~LoopsFileDefinerCreator() :
protocols::loops::loops_definers::LoopsFileDefinerCreator
~LoopsFileIO() :
protocols::loops::LoopsFileIO
~LoopsFileLoader() :
protocols::loops::LoopsFileLoader
~LoopsFileOptions() :
protocols::loops::LoopsFileOptions
~LRmsdFilter() :
protocols::protein_interface_design::filters::LRmsdFilter
~MainChainTorsionSet() :
protocols::stepwise::modeler::protein::MainChainTorsionSet
~MakeBundle() :
protocols::helical_bundle::MakeBundle
~MakeBundleHelix() :
protocols::helical_bundle::MakeBundleHelix
~MakePolyXMover() :
protocols::simple_moves::MakePolyXMover
~MakeRotLibJob() :
protocols::make_rot_lib::MakeRotLibJob
~MakeRotLibJobInputter() :
protocols::make_rot_lib::MakeRotLibJobInputter
~MakeRotLibMover() :
protocols::make_rot_lib::MakeRotLibMover
~MakeRotLibOptionsData() :
protocols::make_rot_lib::MakeRotLibOptionsData
~MapHotspot() :
protocols::protein_interface_design::movers::MapHotspot
~MatchCollisionFilter() :
protocols::match::output::MatchCollisionFilter
~MatchConsolidator() :
protocols::match::output::MatchConsolidator
~MatchConstraintFileInfo() :
protocols::toolbox::match_enzdes_util::MatchConstraintFileInfo
~MatchConstraintFileInfoList() :
protocols::toolbox::match_enzdes_util::MatchConstraintFileInfoList
~MatchCounter() :
protocols::match::MatchCounter
~Matcher() :
protocols::match::Matcher
~MatcherMover() :
protocols::match::MatcherMover
~MatcherTask() :
protocols::match::MatcherTask
~MatchEvaluator() :
protocols::match::output::MatchEvaluator
~MatchFilter() :
protocols::match::output::MatchFilter
~MatchGrafter() :
protocols::metal_interface::MatchGrafter
~MatchGrouper() :
protocols::match::output::MatchGrouper
~MatchOutputter() :
protocols::match::output::MatchOutputter
~MatchPositionModifier() :
protocols::match::MatchPositionModifier
~MatchProcessor() :
protocols::match::output::MatchProcessor
~MatchResidues() :
protocols::fldsgn::MatchResidues
~MatchResiduesMover() :
protocols::fldsgn::MatchResiduesMover
~MatchScoreWriter() :
protocols::match::output::MatchScoreWriter
~MatDesGreedyOptMutationMover() :
protocols::matdes::MatDesGreedyOptMutationMover
~MatDesPointMutationCalculator() :
protocols::matdes::MatDesPointMutationCalculator
~MaxSeqSepConstraintSet() :
protocols::constraints_additional::MaxSeqSepConstraintSet
~MC_Comb() :
protocols::stepwise::sampler::MC_Comb
~MC_StepWiseSampler() :
protocols::stepwise::sampler::MC_StepWiseSampler
~MCShowMover() :
protocols::moves::MCShowMover
~MDBase() :
protocols::md::MDBase
~MembraneJump() :
protocols::jumping::MembraneJump
~MembranePositionFromTopologyMover() :
protocols::membrane::MembranePositionFromTopologyMover
~MembraneTopology() :
protocols::simple_moves::MembraneTopology
~MetalloClaimer() :
protocols::topology_broker::MetalloClaimer
~MetalSiteResidue() :
protocols::metal_interface::MetalSiteResidue
~MetricCalculatorFitnessFunction() :
protocols::multistate_design::MetricCalculatorFitnessFunction
~MetricRecorder() :
protocols::canonical_sampling::MetricRecorder
~MetricValueGetter() :
protocols::toolbox::pose_metric_calculators::MetricValueGetter
~MetropolisHastingsMover() :
protocols::canonical_sampling::MetropolisHastingsMover
~MinimalistFlexbbEdge() :
protocols::flexpack::interaction_graph::MinimalistFlexbbEdge
~MinimalistFlexbbInteractionGraph() :
protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph
~MinimalistFlexbbNode() :
protocols::flexpack::interaction_graph::MinimalistFlexbbNode
~MinimalRotamer() :
protocols::simple_moves::MinimalRotamer
~MinimizeBackbone() :
protocols::ligand_docking::MinimizeBackbone
~MinimizeLigand() :
protocols::ligand_docking::MinimizeLigand
~MinimizeStoredRBConfs() :
protocols::enzdes::MinimizeStoredRBConfs
~MiniRelax() :
protocols::relax::MiniRelax
~MinMover() :
protocols::simple_moves::MinMover
~MinPackMover() :
protocols::simple_moves::MinPackMover
~MissingDensityToJumpMover() :
protocols::simple_moves::MissingDensityToJumpMover
~ModelCDRH3() :
protocols::antibody::ModelCDRH3
~ModifyAnnealer() :
protocols::toolbox::task_operations::ModifyAnnealer
~ModifyStoredRBConfs() :
protocols::enzdes::ModifyStoredRBConfs
~MolarMassFilter() :
protocols::ligand_docking::MolarMassFilter
~MolecularMassFilter() :
protocols::ligand_docking::MolecularMassFilter
~MolecularWeightNormalization() :
protocols::qsar::scoring_grid::MolecularWeightNormalization
~MonteCarlo() :
protocols::moves::MonteCarlo
~MonteCarloLoader() :
protocols::jd2::parser::MonteCarloLoader
~MonteCarloRecover() :
protocols::simple_moves::MonteCarloRecover
~MonteCarloReset() :
protocols::simple_moves::MonteCarloReset
~MonteCarloTest() :
protocols::simple_moves::MonteCarloTest
~MonteCarloUtil() :
protocols::moves::MonteCarloUtil
~Motif() :
protocols::motifs::Motif
~MotifDnaPacker() :
protocols::motifs::MotifDnaPacker
~MotifGraftMover() :
protocols::motif_grafting::movers::MotifGraftMover
~MotifHashRigidScore() :
protocols::sic_dock::scores::MotifHashRigidScore
~MotifHit() :
protocols::motifs::MotifHit
~MotifLibrary() :
protocols::motifs::MotifLibrary
~MotifScoreFilter() :
protocols::simple_filters::MotifScoreFilter
~MotifSearch() :
protocols::motifs::MotifSearch
~MoveBeforeFilter() :
protocols::filters::MoveBeforeFilter
~MoveMapBuilder() :
protocols::ligand_docking::MoveMapBuilder
~MoveMapBuilderLoader() :
protocols::ligand_docking::MoveMapBuilderLoader
~MoveMapMover() :
protocols::moves::MoveMapMover
~Mover() :
protocols::moves::Mover
~MoverApplyingMover() :
protocols::moves::MoverApplyingMover
~MoverCreator() :
protocols::moves::MoverCreator
~MoverFactory() :
protocols::moves::MoverFactory
~MoverForPoseList() :
protocols::moves::MoverForPoseList
~MoverStatistics() :
protocols::moves::MoverStatistics
~MPDockingMover() :
protocols::docking::membrane::MPDockingMover
~MPDockingSetupMover() :
protocols::docking::membrane::MPDockingSetupMover
~MPFastRelaxMover() :
protocols::relax::membrane::MPFastRelaxMover
~MPI_LoopHashRefine() :
protocols::loophash::MPI_LoopHashRefine
~MPI_LoopHashRefine_Emperor() :
protocols::loophash::MPI_LoopHashRefine_Emperor
~MPI_LoopHashRefine_Master() :
protocols::loophash::MPI_LoopHashRefine_Master
~MPI_Refine_Emperor() :
protocols::mpi_refinement::MPI_Refine_Emperor
~MPI_Refine_Master() :
protocols::mpi_refinement::MPI_Refine_Master
~MPI_Refinement() :
protocols::mpi_refinement::MPI_Refinement
~MPI_WorkUnitManager() :
protocols::wum::MPI_WorkUnitManager
~MPI_WorkUnitManager_Slave() :
protocols::wum::MPI_WorkUnitManager_Slave
~MpiFileBuffer() :
protocols::jd2::MpiFileBuffer
~MPIFileBufJobDistributor() :
protocols::jd2::MPIFileBufJobDistributor
~MPIMultistateFitnessFunction() :
protocols::pack_daemon::MPIMultistateFitnessFunction
~MPIWorkPartitionJobDistributor() :
protocols::jd2::MPIWorkPartitionJobDistributor
~MPIWorkPoolJobDistributor() :
protocols::jd2::MPIWorkPoolJobDistributor
~MPSymDockMover() :
protocols::symmetric_docking::membrane::MPSymDockMover
~MSDJobDistributor() :
protocols::jd2::MSDJobDistributor
~MSDMover() :
protocols::simple_moves::MSDMover
~MultiObjective() :
protocols::mpi_refinement::MultiObjective
~MultiPhosphateSampler() :
protocols::stepwise::modeler::rna::phosphate::MultiPhosphateSampler
~MultipleOutputWrapper() :
protocols::rosetta_scripts::MultipleOutputWrapper
~MultiplePoseMover() :
protocols::rosetta_scripts::MultiplePoseMover
~MultipleSigmoids() :
protocols::simple_filters::MultipleSigmoids
~MultiStateAggregateFunction() :
protocols::multistate_design::MultiStateAggregateFunction
~MultistateAggregateFunction() :
protocols::pack_daemon::MultistateAggregateFunction
~MultiStateEntity() :
protocols::multistate_design::MultiStateEntity< T >
~MultiStateFitnessFunction() :
protocols::multistate_design::MultiStateFitnessFunction
~MultistateFitnessFunction() :
protocols::pack_daemon::MultistateFitnessFunction
~MultiStatePacker() :
protocols::multistate_design::MultiStatePacker
~MultiThreadingJob() :
protocols::jd2::MultiThreadingJob
~MultiThreadingMover() :
protocols::comparative_modeling::MultiThreadingMover
~Mutant() :
protocols::pmut_scan::Mutant
~Mutate1Randomizer() :
protocols::genetic_algorithm::Mutate1Randomizer
~MutateResidue() :
protocols::simple_moves::MutateResidue
~MutationData() :
protocols::pmut_scan::MutationData
~MutationsFilter() :
protocols::simple_filters::MutationsFilter
~NamedAtomPairConstraintCreator() :
protocols::constraints_additional::NamedAtomPairConstraintCreator
~NatbiasHelicesSheetPotential() :
protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
~NatbiasHelixPairPotential() :
protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
~NatbiasStrandPairPotential() :
protocols::fldsgn::potentials::sspot::NatbiasStrandPairPotential
~NativeEvaluatorCreator() :
protocols::simple_filters::NativeEvaluatorCreator
~NativeRMSD_Screener() :
protocols::stepwise::screener::NativeRMSD_Screener
~NcbbDockDesignProtocol() :
protocols::ncbb::NcbbDockDesignProtocol
~NcontactsCalculator() :
protocols::fldsgn::NcontactsCalculator
~NcontactsFilter() :
protocols::fldsgn::filters::NcontactsFilter
~NeighborDependentTabooSamplingKinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::NeighborDependentTabooSamplingKinematicPerturber
~NeighborDependentTorsionSamplingKinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::NeighborDependentTorsionSamplingKinematicPerturber
~NeighborTypeFilter() :
protocols::simple_filters::NeighborTypeFilter
~NestedEnergyTermDDGMutationOptEData() :
protocols::optimize_weights::NestedEnergyTermDDGMutationOptEData
~NestedEnergyTermPNatAAOptEPositionData() :
protocols::optimize_weights::NestedEnergyTermPNatAAOptEPositionData
~NetChargeFilter() :
protocols::simple_filters::NetChargeFilter
~NMerPSSMEnergyFilter() :
protocols::simple_filters::NMerPSSMEnergyFilter
~NMerSVMEnergyFilter() :
protocols::simple_filters::NMerSVMEnergyFilter
~NoesyModule() :
protocols::noesy_assign::NoesyModule
~NonlocalContactsCalculator() :
protocols::toolbox::pose_metric_calculators::NonlocalContactsCalculator
~NonlocalPair() :
protocols::frag_picker::nonlocal::NonlocalPair
~NonPlaidFingerprint() :
protocols::pockets::NonPlaidFingerprint
~NonSequentialNeighborsFilter() :
protocols::simple_filters::NonSequentialNeighborsFilter
~NoOpStepWiseSampler() :
protocols::stepwise::sampler::NoOpStepWiseSampler
~NormalizedEvaluatedArchive() :
protocols::jd2::archive::NormalizedEvaluatedArchive
~NormalMode() :
protocols::normalmode::NormalMode
~NormalModeMinimizer() :
protocols::normalmode::NormalModeMinimizer
~NormalModeMultifunc() :
protocols::normalmode::NormalModeMultifunc
~NormalModeRelaxMover() :
protocols::normalmode::NormalModeRelaxMover
~NPDPropCalculator() :
protocols::pack_daemon::NPDPropCalculator
~NPDPropCalculatorCreator() :
protocols::pack_daemon::NPDPropCalculatorCreator
~NtoC_RCG() :
protocols::forge::constraints::NtoC_RCG
~NullMover() :
protocols::moves::NullMover
~NumNeighborsMPM() :
protocols::match::NumNeighborsMPM
~O2M_MutateMover() :
protocols::simple_moves::O2M_MutateMover
~O2PrimePacker() :
protocols::stepwise::modeler::rna::o2prime::O2PrimePacker
~O2PrimeScreener() :
protocols::stepwise::screener::O2PrimeScreener
~OccupiedSpaceHash() :
protocols::match::OccupiedSpaceHash
~OligomericAverageDegreeFilter() :
protocols::matdes::OligomericAverageDegreeFilter
~OopCreatorMover() :
protocols::ncbb::oop::OopCreatorMover
~OopDockDesignProtocol() :
protocols::ncbb::oop::OopDockDesignProtocol
~OopDPuckMinusMover() :
protocols::simple_moves::oop::OopDPuckMinusMover
~OopDPuckPlusMover() :
protocols::simple_moves::oop::OopDPuckPlusMover
~OopMover() :
protocols::simple_moves::oop::OopMover
~OopPatcher() :
protocols::simple_moves::oop::OopPatcher
~OopPuckMinusMover() :
protocols::simple_moves::oop::OopPuckMinusMover
~OopPuckPlusMover() :
protocols::simple_moves::oop::OopPuckPlusMover
~OopRandomPuckMover() :
protocols::simple_moves::oop::OopRandomPuckMover
~OopRandomSmallMover() :
protocols::simple_moves::oop::OopRandomSmallMover
~OP_const_iterator() :
protocols::toolbox::OP_const_iterator< const_iterator, SomeOP >
~Operator() :
protocols::simple_filters::Operator
~OptEData() :
protocols::optimize_weights::OptEData
~OptEMultifunc() :
protocols::optimize_weights::OptEMultifunc
~OptEPositionData() :
protocols::optimize_weights::OptEPositionData
~OrbitalsFeatures() :
protocols::features::OrbitalsFeatures
~OrbitalsFeaturesCreator() :
protocols::features::OrbitalsFeaturesCreator
~OriginalBackboneBuildPoint() :
protocols::match::upstream::OriginalBackboneBuildPoint
~OrSelector() :
protocols::pose_selectors::OrSelector
~OTFFlexbbEdge() :
protocols::flexpack::interaction_graph::OTFFlexbbEdge
~OTFFlexbbInteractionGraph() :
protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph
~OTFFlexbbNode() :
protocols::flexpack::interaction_graph::OTFFlexbbNode
~OtherContextScoreFunction() :
protocols::flexpack::OtherContextScoreFunction
~Outputter() :
protocols::outputter::Outputter
~OutputWriter() :
protocols::match::output::OutputWriter
~PackDaemon() :
protocols::pack_daemon::PackDaemon
~PackerNeighborGraphFilter() :
protocols::simple_filters::PackerNeighborGraphFilter
~PackingState() :
protocols::multistate_design::PackingState
~PackRotamersMover() :
protocols::simple_moves::PackRotamersMover
~PackRotamersMoverLazy() :
protocols::simple_moves::PackRotamersMoverLazy
~PackRotamersMoverPartGreedy() :
protocols::enzdes::PackRotamersMoverPartGreedy
~PackScreener() :
protocols::stepwise::screener::PackScreener
~PackStatFilter() :
protocols::simple_filters::PackStatFilter
~PairFeatures() :
protocols::features::PairFeatures
~PairFeaturesCreator() :
protocols::features::PairFeaturesCreator
~PairingStatistics() :
protocols::abinitio::PairingStatistics
~PalesEvaluatorCreator() :
protocols::simple_filters::PalesEvaluatorCreator
~ParallelBetaPairingPreferenceFilter() :
protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter
~ParallelTempering() :
protocols::canonical_sampling::ParallelTempering
~ParatopeEpitopeSiteConstraintMover() :
protocols::antibody::constraints::ParatopeEpitopeSiteConstraintMover
~ParatopeSiteConstraintMover() :
protocols::antibody::constraints::ParatopeSiteConstraintMover
~ParetoOptMutationMover() :
protocols::design_opt::ParetoOptMutationMover
~ParsedProtocol() :
protocols::rosetta_scripts::ParsedProtocol
~Parser() :
protocols::jd2::Parser
~ParserJobInputter() :
protocols::protein_interface_design::ParserJobInputter
~PartialSecondarySimilarity() :
protocols::frag_picker::scores::PartialSecondarySimilarity
~PartialThreadingMover() :
protocols::comparative_modeling::PartialThreadingMover
~PartitionAggregateFunction() :
protocols::multistate_design::PartitionAggregateFunction< T >
~PartitionContactScreener() :
protocols::stepwise::screener::PartitionContactScreener
~PatchdockReader() :
protocols::protein_interface_design::PatchdockReader
~PatchdockTransform() :
protocols::protein_interface_design::movers::PatchdockTransform
~PCA() :
protocols::evaluation::PCA
~PCluster() :
protocols::pockets::PCluster
~PCS_data() :
protocols::scoring::methods::pcs::PCS_data
~PCS_data_input() :
protocols::scoring::methods::pcs::PCS_data_input
~PCS_data_input_Ts1() :
protocols::scoring::methods::pcsTs1::PCS_data_input_Ts1
~PCS_data_input_Ts2() :
protocols::scoring::methods::pcsTs2::PCS_data_input_Ts2
~PCS_data_input_Ts3() :
protocols::scoring::methods::pcsTs3::PCS_data_input_Ts3
~PCS_data_input_Ts4() :
protocols::scoring::methods::pcsTs4::PCS_data_input_Ts4
~PCS_data_per_lanthanides() :
protocols::scoring::methods::pcs::PCS_data_per_lanthanides
~PCS_data_per_lanthanides_Ts1() :
protocols::scoring::methods::pcsTs1::PCS_data_per_lanthanides_Ts1
~PCS_data_per_lanthanides_Ts2() :
protocols::scoring::methods::pcsTs2::PCS_data_per_lanthanides_Ts2
~PCS_data_per_lanthanides_Ts3() :
protocols::scoring::methods::pcsTs3::PCS_data_per_lanthanides_Ts3
~PCS_data_per_lanthanides_Ts4() :
protocols::scoring::methods::pcsTs4::PCS_data_per_lanthanides_Ts4
~PCS_data_Ts1() :
protocols::scoring::methods::pcsTs1::PCS_data_Ts1
~PCS_data_Ts2() :
protocols::scoring::methods::pcsTs2::PCS_data_Ts2
~PCS_data_Ts3() :
protocols::scoring::methods::pcsTs3::PCS_data_Ts3
~PCS_data_Ts4() :
protocols::scoring::methods::pcsTs4::PCS_data_Ts4
~PCS_Energy() :
protocols::scoring::methods::pcs::PCS_Energy
~PCS_Energy_Ts1() :
protocols::scoring::methods::pcsTs1::PCS_Energy_Ts1
~PCS_Energy_Ts2() :
protocols::scoring::methods::pcsTs2::PCS_Energy_Ts2
~PCS_Energy_Ts3() :
protocols::scoring::methods::pcsTs3::PCS_Energy_Ts3
~PCS_Energy_Ts4() :
protocols::scoring::methods::pcsTs4::PCS_Energy_Ts4
~PCS_file_data() :
protocols::scoring::methods::pcs::PCS_file_data
~PCS_file_data_Ts1() :
protocols::scoring::methods::pcsTs1::PCS_file_data_Ts1
~PCS_file_data_Ts2() :
protocols::scoring::methods::pcsTs2::PCS_file_data_Ts2
~PCS_file_data_Ts3() :
protocols::scoring::methods::pcsTs3::PCS_file_data_Ts3
~PCS_file_data_Ts4() :
protocols::scoring::methods::pcsTs4::PCS_file_data_Ts4
~PCS_line_data() :
protocols::scoring::methods::pcs::PCS_line_data
~PCS_line_data_Ts1() :
protocols::scoring::methods::pcsTs1::PCS_line_data_Ts1
~PCS_line_data_Ts2() :
protocols::scoring::methods::pcsTs2::PCS_line_data_Ts2
~PCS_line_data_Ts3() :
protocols::scoring::methods::pcsTs3::PCS_line_data_Ts3
~PCS_line_data_Ts4() :
protocols::scoring::methods::pcsTs4::PCS_line_data_Ts4
~PCS_tensor() :
protocols::scoring::methods::pcs::PCS_tensor
~PCS_tensor_Ts1() :
protocols::scoring::methods::pcsTs1::PCS_tensor_Ts1
~PCS_tensor_Ts2() :
protocols::scoring::methods::pcsTs2::PCS_tensor_Ts2
~PCS_tensor_Ts3() :
protocols::scoring::methods::pcsTs3::PCS_tensor_Ts3
~PCS_tensor_Ts4() :
protocols::scoring::methods::pcsTs4::PCS_tensor_Ts4
~PcsDataCenter() :
protocols::scoring::methods::pcs2::PcsDataCenter
~PcsDataCenterManager() :
protocols::scoring::methods::pcs2::PcsDataCenterManager
~PcsDataLanthanide() :
protocols::scoring::methods::pcs2::PcsDataLanthanide
~PcsEnergy() :
protocols::scoring::methods::pcs2::PcsEnergy
~PcsEnergyController() :
protocols::topology_broker::PcsEnergyController
~PcsEnergyParameter() :
protocols::scoring::methods::pcs2::PcsEnergyParameter
~PcsEnergyParameterManager() :
protocols::scoring::methods::pcs2::PcsEnergyParameterManager
~PcsGridSearchParameter() :
protocols::scoring::methods::pcs2::PcsGridSearchParameter
~PcsInputCenter() :
protocols::scoring::methods::pcs2::PcsInputCenter
~PcsInputFile() :
protocols::scoring::methods::pcs2::PcsInputFile
~PcsInputLine() :
protocols::scoring::methods::pcs2::PcsInputLine
~PcsTensor() :
protocols::scoring::methods::pcs2::PcsTensor
~PdbDataFeatures() :
protocols::features::PdbDataFeatures
~PdbDataFeaturesCreator() :
protocols::features::PdbDataFeaturesCreator
~PDBDumpMover() :
protocols::moves::PDBDumpMover
~PDBInputter() :
protocols::inputter::PDBInputter
~PDBJobInputter() :
protocols::jd2::PDBJobInputter
~PDBJobOutputter() :
protocols::jd2::PDBJobOutputter
~PDBLandmark() :
protocols::antibody::PDBLandmark
~PDBOutput() :
protocols::dna::PDBOutput
~PDBOutputter() :
protocols::outputter::PDBOutputter
~PDBReloadMover() :
protocols::simple_moves::PDBReloadMover
~PDBTrajectoryRecorder() :
protocols::canonical_sampling::PDBTrajectoryRecorder
~PDBWriter() :
protocols::match::output::PDBWriter
~PDDFEnergy() :
protocols::scoring::methods::saxs::PDDFEnergy
~PDDFScoreFilter() :
protocols::simple_filters::PDDFScoreFilter
~PeakAssignment() :
protocols::noesy_assign::PeakAssignment
~PeakAssignmentResidueMap() :
protocols::noesy_assign::PeakAssignmentResidueMap
~PeakCalibrator() :
protocols::noesy_assign::PeakCalibrator
~PeakCalibratorMap() :
protocols::noesy_assign::PeakCalibratorMap
~PeakFileFormat() :
protocols::noesy_assign::PeakFileFormat
~PeakFileFormat_Base() :
protocols::noesy_assign::PeakFileFormat_Base
~PeptideStapleDesignMover() :
protocols::protein_interface_design::movers::PeptideStapleDesignMover
~PeptideStubMover() :
protocols::cyclic_peptide::PeptideStubMover
~PerNativeRRReporterHuman() :
protocols::rotamer_recovery::PerNativeRRReporterHuman
~PerturbBundle() :
protocols::helical_bundle::PerturbBundle
~PerturbBundleHelix() :
protocols::helical_bundle::PerturbBundleHelix
~PerturbBundleOptions() :
protocols::helical_bundle::PerturbBundleOptions
~PerturbByBins() :
protocols::simple_moves::bin_transitions::PerturbByBins
~PerturberSet() :
protocols::kinematic_closure::perturbers::PerturberSet
~Phi() :
protocols::frag_picker::scores::Phi
~PhosphateMove() :
protocols::stepwise::modeler::rna::phosphate::PhosphateMove
~PhosphateMover() :
protocols::stepwise::modeler::rna::phosphate::PhosphateMover
~PhosphateScreener() :
protocols::stepwise::screener::PhosphateScreener
~PlacementAuctionMover() :
protocols::protein_interface_design::movers::PlacementAuctionMover
~PlacementMinimizationMover() :
protocols::protein_interface_design::movers::PlacementMinimizationMover
~PlaceOnLoop() :
protocols::protein_interface_design::movers::PlaceOnLoop
~PlaceSimultaneouslyMover() :
protocols::protein_interface_design::movers::PlaceSimultaneouslyMover
~PlaceStubMover() :
protocols::protein_interface_design::movers::PlaceStubMover
~PlainPdbJobDistributor() :
protocols::jobdist::PlainPdbJobDistributor
~PlainRawJobDistributor() :
protocols::jobdist::PlainRawJobDistributor
~PlainSilentFileJobDistributor() :
protocols::jobdist::PlainSilentFileJobDistributor
~PNatAAOptEPositionData() :
protocols::optimize_weights::PNatAAOptEPositionData
~PNatAAOptERotamerData() :
protocols::optimize_weights::PNatAAOptERotamerData
~PNatLigPoseOptEData() :
protocols::optimize_weights::PNatLigPoseOptEData
~PNatRotOptEPositionData() :
protocols::optimize_weights::PNatRotOptEPositionData
~PNatRotOptERotamerData() :
protocols::optimize_weights::PNatRotOptERotamerData
~PNatStructureOptEData() :
protocols::optimize_weights::PNatStructureOptEData
~PocketConstraint() :
protocols::pockets::PocketConstraint
~PocketConstraintCreator() :
protocols::pockets::PocketConstraintCreator
~PocketExemplarMultifunc() :
protocols::pockets::PocketExemplarMultifunc
~PocketGrid() :
protocols::pockets::PocketGrid
~PointMutationCalculator() :
protocols::design_opt::PointMutationCalculator
~PointMutScanDriver() :
protocols::pmut_scan::PointMutScanDriver
~PolarHydrogenPacker() :
protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
~Pool_ConvergenceCheck() :
protocols::canonical_sampling::mc_convergence_checks::Pool_ConvergenceCheck
~Pool_Evaluator() :
protocols::canonical_sampling::mc_convergence_checks::Pool_Evaluator
~Pool_RMSD() :
protocols::canonical_sampling::mc_convergence_checks::Pool_RMSD
~PoolEvaluatorCreator() :
protocols::simple_filters::PoolEvaluatorCreator
~PoseComment() :
protocols::simple_filters::PoseComment
~PoseCommentsFeatures() :
protocols::features::PoseCommentsFeatures
~PoseCommentsFeaturesCreator() :
protocols::features::PoseCommentsFeaturesCreator
~PoseCondition() :
protocols::moves::PoseCondition
~PoseConformationFeatures() :
protocols::features::PoseConformationFeatures
~PoseConformationFeaturesCreator() :
protocols::features::PoseConformationFeaturesCreator
~PoseEvaluator() :
protocols::evaluation::PoseEvaluator
~PoseFoundResiduesCombination() :
protocols::enzdes::PoseFoundResiduesCombination
~PoseInfoFilter() :
protocols::simple_filters::PoseInfoFilter
~PoseInputStreamJobInputter() :
protocols::jd2::PoseInputStreamJobInputter
~PoseInserter() :
protocols::match::output::PoseInserter
~PoseMatchOutputWriter() :
protocols::match::output::PoseMatchOutputWriter
~PosePropertyReporter() :
protocols::rosetta_scripts::PosePropertyReporter
~PosePropertyReporterCreator() :
protocols::rosetta_scripts::PosePropertyReporterCreator
~PosePropertyReporterFactory() :
protocols::rosetta_scripts::PosePropertyReporterFactory
~PoseSelectionScreener() :
protocols::stepwise::screener::PoseSelectionScreener
~PoseSelector() :
protocols::rosetta_scripts::PoseSelector
~PoseSelectorCreator() :
protocols::rosetta_scripts::PoseSelectorCreator
~PoseSelectorFactory() :
protocols::rosetta_scripts::PoseSelectorFactory
~PositionSpecificRandomizer() :
protocols::genetic_algorithm::PositionSpecificRandomizer
~PosType() :
protocols::multistate_design::PosType
~PosTypeCreator() :
protocols::multistate_design::PosTypeCreator
~PowExpression() :
protocols::pack_daemon::PowExpression
~PrecomputedLibraryMover() :
protocols::stepwise::modeler::precomputed::PrecomputedLibraryMover
~PredesignPerturbMover() :
protocols::enzdes::PredesignPerturbMover
~PredictedBurialEvaluator() :
protocols::simple_filters::PredictedBurialEvaluator
~PredictedBurialFnEvaluatorCreator() :
protocols::simple_filters::PredictedBurialFnEvaluatorCreator
~PrepackMover() :
protocols::protein_interface_design::movers::PrepackMover
~PreventChainFromRepackingOperation() :
protocols::toolbox::task_operations::PreventChainFromRepackingOperation
~PreventResiduesFromRepackingOperation() :
protocols::toolbox::task_operations::PreventResiduesFromRepackingOperation
~ProcessorFactory() :
protocols::match::output::ProcessorFactory
~ProfilerMover() :
protocols::moves::ProfilerMover
~ProfileScore() :
protocols::frag_picker::scores::ProfileScore
~ProfileScoreBlosum62() :
protocols::frag_picker::scores::ProfileScoreBlosum62
~ProfileScoreL1() :
protocols::frag_picker::scores::ProfileScoreL1
~ProfileScoreStructL1() :
protocols::frag_picker::scores::ProfileScoreStructL1
~ProfileScoreSubMatrix() :
protocols::frag_picker::scores::ProfileScoreSubMatrix
~ProgressBarObserver() :
protocols::canonical_sampling::ProgressBarObserver
~ProlineFixMover() :
protocols::simple_moves::ProlineFixMover
~ProtectedConformation() :
protocols::environment::ProtectedConformation
~ProteinAtrRepChecker() :
protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker
~ProteinAtrRepScreener() :
protocols::stepwise::legacy::screener::ProteinAtrRepScreener
~ProteinBackboneAtomAtomPairFeatures() :
protocols::features::ProteinBackboneAtomAtomPairFeatures
~ProteinBackboneAtomAtomPairFeaturesCreator() :
protocols::features::ProteinBackboneAtomAtomPairFeaturesCreator
~ProteinBackboneBuildPoint() :
protocols::match::upstream::ProteinBackboneBuildPoint
~ProteinBackboneTorsionAngleFeatures() :
protocols::features::ProteinBackboneTorsionAngleFeatures
~ProteinBackboneTorsionAngleFeaturesCreator() :
protocols::features::ProteinBackboneTorsionAngleFeaturesCreator
~ProteinBetaAntiParallelStepWiseSampler() :
protocols::stepwise::sampler::protein::ProteinBetaAntiParallelStepWiseSampler
~ProteinBondGeometryFeatures() :
protocols::features::ProteinBondGeometryFeatures
~ProteinBondGeometryFeaturesCreator() :
protocols::features::ProteinBondGeometryFeaturesCreator
~ProteinCCD_ClosureScreener() :
protocols::stepwise::screener::ProteinCCD_ClosureScreener
~ProteinFragmentStepWiseSampler() :
protocols::stepwise::sampler::protein::ProteinFragmentStepWiseSampler
~ProteinInterfaceDesignOperation() :
protocols::toolbox::task_operations::ProteinInterfaceDesignOperation
~ProteinInterfaceMultiStateDesignMover() :
protocols::protein_interface_design::movers::ProteinInterfaceMultiStateDesignMover
~ProteinLigandInterfaceUpweighter() :
protocols::enzdes::ProteinLigandInterfaceUpweighter
~ProteinMainChainStepWiseSampler() :
protocols::stepwise::sampler::protein::ProteinMainChainStepWiseSampler
~ProteinResidueConformationFeatures() :
protocols::features::ProteinResidueConformationFeatures
~ProteinResidueConformationFeaturesCreator() :
protocols::features::ProteinResidueConformationFeaturesCreator
~ProteinRMSDFeatures() :
protocols::features::ProteinRMSDFeatures
~ProteinRMSDFeaturesCreator() :
protocols::features::ProteinRMSDFeaturesCreator
~ProteinRMSDNoSuperpositionFeatures() :
protocols::features::ProteinRMSDNoSuperpositionFeatures
~ProteinRMSDNoSuperpositionFeaturesCreator() :
protocols::features::ProteinRMSDNoSuperpositionFeaturesCreator
~ProteinSCSampler() :
protocols::match::upstream::ProteinSCSampler
~ProteinSilentReport() :
protocols::features::ProteinSilentReport
~ProteinUpstreamBuilder() :
protocols::match::upstream::ProteinUpstreamBuilder
~Protocol() :
protocols::abinitio::Protocol
~ProtocolFeatures() :
protocols::features::ProtocolFeatures
~ProtonResonance() :
protocols::noesy_assign::ProtonResonance
~Psi() :
protocols::frag_picker::scores::Psi
~PSSMOptEPositionData() :
protocols::optimize_weights::PSSMOptEPositionData
~PyMolMover() :
protocols::moves::PyMolMover
~PyMolObserver() :
protocols::moves::PyMolObserver
~qsarMap() :
protocols::qsar::qsarMap
~qsarOptFunc() :
protocols::qsar::qsarOptFunc
~qsarPoint() :
protocols::qsar::qsarPoint
~QuickRepacker() :
protocols::pack_daemon::QuickRepacker
~QuotaPool() :
protocols::frag_picker::quota::QuotaPool
~QuotaSelector() :
protocols::frag_picker::quota::QuotaSelector
~RadiusOfGyrationFeatures() :
protocols::features::RadiusOfGyrationFeatures
~RadiusOfGyrationFeaturesCreator() :
protocols::features::RadiusOfGyrationFeaturesCreator
~RamaCheck1B() :
protocols::loops::loop_closure::ccd::RamaCheck1B
~RamaCheck2B() :
protocols::loops::loop_closure::ccd::RamaCheck2B
~RamaCheckBase() :
protocols::loops::loop_closure::ccd::RamaCheckBase
~RampingFunc() :
protocols::moves::RampingFunc
~RampingMover() :
protocols::moves::RampingMover
~RandomConformerMover() :
protocols::ligand_docking::RandomConformerMover
~RandomConformers() :
protocols::ligand_docking::RandomConformers
~RandomMutation() :
protocols::protein_interface_design::movers::RandomMutation
~RandomOmegaFlipMover() :
protocols::simple_moves::RandomOmegaFlipMover
~RandomPositionRotationMover() :
protocols::membrane::RandomPositionRotationMover
~RandomPositionTranslationMover() :
protocols::membrane::RandomPositionTranslationMover
~RandomTorsionMover() :
protocols::simple_moves::RandomTorsionMover
~RangeFilter() :
protocols::simple_filters::RangeFilter
~Rattle() :
protocols::md::Rattle
~RBSegmentRelax() :
protocols::rbsegment_relax::RBSegmentRelax
~RBSegmentRelaxImpl() :
protocols::RBSegmentRelaxImpl
~RdcEvaluatorCreator() :
protocols::simple_filters::RdcEvaluatorCreator
~RdcSelectEvaluatorCreator() :
protocols::simple_filters::RdcSelectEvaluatorCreator
~RdcTargetEvaluatorCreator() :
protocols::simple_filters::RdcTargetEvaluatorCreator
~RDFBase() :
protocols::ligand_docking::rdf::RDFBase
~RDFBinaryHbondFunction() :
protocols::ligand_docking::rdf::RDFBinaryHbondFunction
~RDFBinaryOrbitalFunction() :
protocols::ligand_docking::rdf::RDFBinaryOrbitalFunction
~RDFChargeFunction() :
protocols::ligand_docking::rdf::RDFChargeFunction
~RDFElecFunction() :
protocols::ligand_docking::rdf::RDFElecFunction
~RDFEtableFunction() :
protocols::ligand_docking::rdf::RDFEtableFunction
~RDFFunctionCreator() :
protocols::ligand_docking::rdf::RDFFunctionCreator
~RDFFunctionFactory() :
protocols::ligand_docking::rdf::RDFFunctionFactory
~RDFHbondFunction() :
protocols::ligand_docking::rdf::RDFHbondFunction
~RDFOrbitalFunction() :
protocols::ligand_docking::rdf::RDFOrbitalFunction
~ReadResfileFromDB() :
protocols::toolbox::task_operations::ReadResfileFromDB
~RefineBetaBarrel() :
protocols::antibody::RefineBetaBarrel
~RefineOneCDRLoop() :
protocols::antibody::RefineOneCDRLoop
~RefineOneCDRLoopCentroid() :
protocols::antibody::RefineOneCDRLoopCentroid
~Region() :
protocols::nonlocal::Region
~RelativeConnectRight() :
protocols::forge::build::RelativeConnectRight
~RelativePoseFilter() :
protocols::simple_filters::RelativePoseFilter
~RelativeSegmentFilter() :
protocols::protein_interface_design::filters::RelativeSegmentFilter
~RelativeSequencePosition() :
protocols::forge::build::RelativeSequencePosition
~RelaxProtocolBase() :
protocols::relax::RelaxProtocolBase
~RemodelAccumulator() :
protocols::forge::remodel::RemodelAccumulator
~RemodelConstraintGenerator() :
protocols::forge::remodel::RemodelConstraintGenerator
~RemodelDesignMover() :
protocols::forge::remodel::RemodelDesignMover
~RemodelEnzdesCstModule() :
protocols::forge::remodel::RemodelEnzdesCstModule
~RemodelGlobalFrame() :
protocols::forge::remodel::RemodelGlobalFrame
~RemodelLoopMover() :
protocols::forge::remodel::RemodelLoopMover
~RemodelMover() :
protocols::forge::remodel::RemodelMover
~RemodelRotamerLinks() :
protocols::forge::remodel::RemodelRotamerLinks
~RemodelWorkingSet() :
protocols::forge::remodel::RemodelWorkingSet
~RemoveCsts() :
protocols::forge::constraints::RemoveCsts
~RemoveNorCTermMPM() :
protocols::match::RemoveNorCTermMPM
~RenderGridsToKinemage() :
protocols::qsar::RenderGridsToKinemage
~RepackLigandSiteWithoutLigandMover() :
protocols::enzdes::RepackLigandSiteWithoutLigandMover
~RepackMinimize() :
protocols::protein_interface_design::movers::RepackMinimize
~RepackTrial() :
protocols::loops::loop_mover::refine::RepackTrial
~RepackTrialCreator() :
protocols::loops::loop_mover::refine::RepackTrialCreator
~RepackWithoutLigandFilter() :
protocols::enzdes::RepackWithoutLigandFilter
~RepeatMover() :
protocols::moves::RepeatMover
~RepeatParameterFilter() :
protocols::simple_filters::RepeatParameterFilter
~ReplaceRegionMover() :
protocols::grafting::simple_movers::ReplaceRegionMover
~ReplicaExchangeMC() :
protocols::moves::ReplicaExchangeMC
~ReplicateFilter() :
protocols::filters::ReplicateFilter
~Report() :
protocols::features::Report
~ReportEffectivePKA() :
protocols::simple_moves::ReportEffectivePKA
~ReportFilter() :
protocols::simple_filters::ReportFilter
~ReportFSC() :
protocols::electron_density::ReportFSC
~ReportPSSMDifferences() :
protocols::protein_interface_design::ReportPSSMDifferences
~ReportSequenceDifferences() :
protocols::protein_interface_design::ReportSequenceDifferences
~ReportToDB() :
protocols::features::ReportToDB
~RepulsiveOnlyMover() :
protocols::simple_moves::RepulsiveOnlyMover
~ResampleMover() :
protocols::stepwise::monte_carlo::mover::ResampleMover
~ResFileOutputter() :
protocols::outputter::ResFileOutputter
~ResId() :
protocols::moves::ResId
~ResidueAlternativeSet() :
protocols::stepwise::sampler::copy_dofs::ResidueAlternativeSet
~ResidueAlternativeStepWiseSampler() :
protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSampler
~ResidueAlternativeStepWiseSamplerComb() :
protocols::stepwise::sampler::copy_dofs::ResidueAlternativeStepWiseSamplerComb
~ResidueBurialFeatures() :
protocols::features::ResidueBurialFeatures
~ResidueBurialFeaturesCreator() :
protocols::features::ResidueBurialFeaturesCreator
~ResidueBurialFilter() :
protocols::simple_filters::ResidueBurialFilter
~ResidueConformationFeatures() :
protocols::features::ResidueConformationFeatures
~ResidueConformationFeaturesCreator() :
protocols::features::ResidueConformationFeaturesCreator
~ResidueConformerFilter() :
protocols::enzdes::ResidueConformerFilter
~ResidueContactScreener() :
protocols::stepwise::screener::ResidueContactScreener
~ResidueCountFilter() :
protocols::simple_filters::ResidueCountFilter
~ResidueDistanceFilter() :
protocols::simple_filters::ResidueDistanceFilter
~ResidueFeature() :
protocols::comparative_modeling::features::ResidueFeature
~ResidueFeatures() :
protocols::features::ResidueFeatures
~ResidueFeaturesCreator() :
protocols::features::ResidueFeaturesCreator
~ResidueGridScoresFeatures() :
protocols::features::ResidueGridScoresFeatures
~ResidueGridScoresFeaturesCreator() :
protocols::features::ResidueGridScoresFeaturesCreator
~ResidueIEFilter() :
protocols::simple_filters::ResidueIEFilter
~ResidueListStepWiseSampler() :
protocols::stepwise::sampler::copy_dofs::ResidueListStepWiseSampler
~ResidueNetwork() :
protocols::toolbox::ResidueNetwork
~ResiduePairJump() :
protocols::jumping::ResiduePairJump
~ResiduePairJumpSingle() :
protocols::jumping::ResiduePairJumpSingle
~ResidueProbDesignOperation() :
protocols::antibody::design::ResidueProbDesignOperation
~ResidueScoresFeatures() :
protocols::features::ResidueScoresFeatures
~ResidueScoresFeaturesCreator() :
protocols::features::ResidueScoresFeaturesCreator
~ResidueSecondaryStructureFeatures() :
protocols::features::ResidueSecondaryStructureFeatures
~ResidueSecondaryStructureFeaturesCreator() :
protocols::features::ResidueSecondaryStructureFeaturesCreator
~ResidueSelectorLoader() :
protocols::jd2::parser::ResidueSelectorLoader
~ResidueSetChainEnergyFilter() :
protocols::simple_filters::ResidueSetChainEnergyFilter
~ResiduesInInterfaceFilter() :
protocols::simple_filters::ResiduesInInterfaceFilter
~ResidueTorsionRestraints() :
protocols::ligand_docking::ResidueTorsionRestraints
~ResidueTotalScoresFeatures() :
protocols::features::ResidueTotalScoresFeatures
~ResidueTotalScoresFeaturesCreator() :
protocols::features::ResidueTotalScoresFeaturesCreator
~ResidueTypeConstraintMover() :
protocols::simple_moves::ResidueTypeConstraintMover
~ResidueTypesFeatures() :
protocols::features::ResidueTypesFeatures
~ResidueTypesFeaturesCreator() :
protocols::features::ResidueTypesFeaturesCreator
~ResidueVicinityInfo() :
protocols::forge::remodel::ResidueVicinityInfo
~ResidueVicinityRCG() :
protocols::forge::remodel::ResidueVicinityRCG
~ResInteractions() :
protocols::toolbox::match_enzdes_util::ResInteractions
~ResolutionSwitcher() :
protocols::abinitio::ResolutionSwitcher
~Resonance() :
protocols::noesy_assign::Resonance
~ResonanceList() :
protocols::noesy_assign::ResonanceList
~RestrictByCalculatorsOperation() :
protocols::toolbox::task_operations::RestrictByCalculatorsOperation
~RestrictChainToRepackingOperation() :
protocols::toolbox::task_operations::RestrictChainToRepackingOperation
~RestrictConservedLowDdgOperation() :
protocols::toolbox::task_operations::RestrictConservedLowDdgOperation
~RestrictDesignToProteinDNAInterface() :
protocols::dna::RestrictDesignToProteinDNAInterface
~RestrictIdentitiesAtAlignedPositionsOperation() :
protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperation
~RestrictIdentitiesOperation() :
protocols::toolbox::task_operations::RestrictIdentitiesOperation
~RestrictInterGroupVectorOperation() :
protocols::toolbox::task_operations::RestrictInterGroupVectorOperation
~RestrictNativeResiduesOperation() :
protocols::toolbox::task_operations::RestrictNativeResiduesOperation
~RestrictNonSurfaceToRepackingOperation() :
protocols::toolbox::task_operations::RestrictNonSurfaceToRepackingOperation
~RestrictOperationsBase() :
protocols::toolbox::task_operations::RestrictOperationsBase
~RestrictResiduesToRepackingOperation() :
protocols::toolbox::task_operations::RestrictResiduesToRepackingOperation
~RestrictToAlignedSegmentsOperation() :
protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperation
~RestrictToCDRH3Loop() :
protocols::toolbox::task_operations::RestrictToCDRH3Loop
~RestrictToInterface() :
protocols::toolbox::task_operations::RestrictToInterface
~RestrictToInterfaceOperation() :
protocols::toolbox::task_operations::RestrictToInterfaceOperation
~RestrictToInterfaceVectorOperation() :
protocols::toolbox::task_operations::RestrictToInterfaceVectorOperation
~RestrictToLoops() :
protocols::toolbox::task_operations::RestrictToLoops
~RestrictToLoopsAndNeighbors() :
protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors
~RestrictToMoveMapChiOperation() :
protocols::toolbox::task_operations::RestrictToMoveMapChiOperation
~RestrictToNeighborhoodOperation() :
protocols::toolbox::task_operations::RestrictToNeighborhoodOperation
~RestrictToTerminiOperation() :
protocols::toolbox::task_operations::RestrictToTerminiOperation
~ResTypeFragmentMover() :
protocols::simple_moves::ResTypeFragmentMover
~RetrieveStoredTaskOperation() :
protocols::toolbox::task_operations::RetrieveStoredTaskOperation
~ReturnSidechainMover() :
protocols::simple_moves::ReturnSidechainMover
~Reversion() :
protocols::dna::Reversion
~Revert() :
protocols::protein_interface_design::Revert
~RGFilter() :
protocols::simple_filters::RGFilter
~RigidBodyDeterministicSpinMover() :
protocols::rigid::RigidBodyDeterministicSpinMover
~RigidBodyDofPerturbMover() :
protocols::rigid::RigidBodyDofPerturbMover
~RigidBodyDofRandomizeMover() :
protocols::rigid::RigidBodyDofRandomizeMover
~RigidBodyDofRandomTransMover() :
protocols::rigid::RigidBodyDofRandomTransMover
~RigidBodyDofSeqPerturbMover() :
protocols::rigid::RigidBodyDofSeqPerturbMover
~RigidBodyDofSeqRandomizeMover() :
protocols::rigid::RigidBodyDofSeqRandomizeMover
~RigidBodyDofSeqTransMover() :
protocols::rigid::RigidBodyDofSeqTransMover
~RigidBodyDofTransMover() :
protocols::rigid::RigidBodyDofTransMover
~RigidBodyInfo() :
protocols::docking::RigidBodyInfo
~RigidBodyMover() :
protocols::rigid::RigidBodyMover
~RigidBodyPerturbMover() :
protocols::rigid::RigidBodyPerturbMover
~RigidBodyPerturbNoCenterMover() :
protocols::rigid::RigidBodyPerturbNoCenterMover
~RigidBodyPerturbRandomJumpMover() :
protocols::rigid::RigidBodyPerturbRandomJumpMover
~RigidBodyRandomizeMover() :
protocols::rigid::RigidBodyRandomizeMover
~RigidBodyRandomTMHMover() :
protocols::topology_broker::RigidBodyRandomTMHMover
~RigidBodySpinMover() :
protocols::rigid::RigidBodySpinMover
~RigidBodyStepWiseSampler() :
protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSampler
~RigidBodyStepWiseSamplerValueRange() :
protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerValueRange
~RigidBodyStepWiseSamplerWithResidueAlternatives() :
protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerWithResidueAlternatives
~RigidBodyStepWiseSamplerWithResidueList() :
protocols::stepwise::sampler::rigid_body::RigidBodyStepWiseSamplerWithResidueList
~RigidBodyTransMover() :
protocols::rigid::RigidBodyTransMover
~RigidChunkCM() :
protocols::abinitio::abscript::RigidChunkCM
~RigidLigandBuilder() :
protocols::match::downstream::RigidLigandBuilder
~RigidScore() :
protocols::sic_dock::RigidScore
~RigidSearchMover() :
protocols::ligand_docking::RigidSearchMover
~RingConformationMover() :
protocols::simple_moves::RingConformationMover
~RmsdEvaluator() :
protocols::simple_filters::RmsdEvaluator
~RmsdEvaluatorCreator() :
protocols::simple_filters::RmsdEvaluatorCreator
~RmsdFilter() :
protocols::protein_interface_design::filters::RmsdFilter
~RmsdSimpleFilter() :
protocols::protein_interface_design::filters::RmsdSimpleFilter
~RmsdTargetEvaluatorCreator() :
protocols::simple_filters::RmsdTargetEvaluatorCreator
~RNA_AddDeleteMonteCarlo() :
protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarlo
~RNA_AtrRepChecker() :
protocols::stepwise::modeler::rna::checker::RNA_AtrRepChecker
~RNA_AtrRepScreener() :
protocols::stepwise::legacy::screener::RNA_AtrRepScreener
~RNA_BaseCentroidChecker() :
protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
~RNA_ChainClosableGeometryChecker() :
protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker
~RNA_ChainClosableGeometryResidueBasedScreener() :
protocols::stepwise::screener::RNA_ChainClosableGeometryResidueBasedScreener
~RNA_ChainClosableGeometryScreener() :
protocols::stepwise::screener::RNA_ChainClosableGeometryScreener
~RNA_ChainClosableGeometryStubBasedScreener() :
protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreener
~RNA_ChainClosureChecker() :
protocols::stepwise::modeler::rna::checker::RNA_ChainClosureChecker
~RNA_ChainClosureScreener() :
protocols::stepwise::screener::RNA_ChainClosureScreener
~RNA_ChunkLibrary() :
protocols::farna::RNA_ChunkLibrary
~RNA_DeNovoProtocol() :
protocols::farna::RNA_DeNovoProtocol
~RNA_FragmentMover() :
protocols::farna::RNA_FragmentMover
~RNA_Fragments() :
protocols::farna::RNA_Fragments
~RNA_HelixAssembler() :
protocols::stepwise::modeler::rna::helix::RNA_HelixAssembler
~RNA_JumpLibrary() :
protocols::farna::RNA_JumpLibrary
~RNA_KIC_Sampler() :
protocols::stepwise::sampler::rna::RNA_KIC_Sampler
~RNA_KinematicCloser() :
protocols::stepwise::sampler::rna::RNA_KinematicCloser
~RNA_O2PrimeMover() :
protocols::stepwise::monte_carlo::rna::RNA_O2PrimeMover
~RNA_PairingTemplate() :
protocols::farna::RNA_PairingTemplate
~RNA_Relaxer() :
protocols::farna::RNA_Relaxer
~RNA_StructureParameters() :
protocols::farna::RNA_StructureParameters
~RNA_TorsionMover() :
protocols::stepwise::monte_carlo::rna::RNA_TorsionMover
~RNA_VDW_BinChecker() :
protocols::stepwise::modeler::rna::checker::RNA_VDW_BinChecker
~RollMover() :
protocols::rigid::RollMover
~Rose() :
protocols::sic_dock::Rose
~RosettaScriptsParser() :
protocols::rosetta_scripts::RosettaScriptsParser
~RotamerBoltzmannWeight() :
protocols::simple_filters::RotamerBoltzmannWeight
~RotamerBoltzmannWeightFeatures() :
protocols::features::RotamerBoltzmannWeightFeatures
~RotamerBoltzmannWeightFeaturesCreator() :
protocols::features::RotamerBoltzmannWeightFeaturesCreator
~RotamerDNAHBondFilter() :
protocols::dna::RotamerDNAHBondFilter
~RotamerFeatures() :
protocols::features::RotamerFeatures
~RotamerFeaturesCreator() :
protocols::features::RotamerFeaturesCreator
~RotamerizeMover() :
protocols::simple_moves::RotamerizeMover
~RotamerRecovery() :
protocols::rotamer_recovery::RotamerRecovery
~RotamerRecoveryFactory() :
protocols::rotamer_recovery::RotamerRecoveryFactory
~RotamerRecoveryFeatures() :
protocols::features::RotamerRecoveryFeatures
~RotamerRecoveryFeaturesCreator() :
protocols::features::RotamerRecoveryFeaturesCreator
~RotamerRecoveryMover() :
protocols::rotamer_recovery::RotamerRecoveryMover
~RotamerSubsetRepacker() :
protocols::pack_daemon::RotamerSubsetRepacker
~RotamerTrialsMinMover() :
protocols::simple_moves::RotamerTrialsMinMover
~RotamerTrialsMover() :
protocols::simple_moves::RotamerTrialsMover
~Rotate() :
protocols::ligand_docking::Rotate
~RotateJumpAxisMover() :
protocols::rigid::RotateJumpAxisMover
~Rotates() :
protocols::ligand_docking::Rotates
~RotationMover() :
protocols::membrane::RotationMover
~RRComparer() :
protocols::rotamer_recovery::RRComparer
~RRComparerAutomorphicRMSD() :
protocols::rotamer_recovery::RRComparerAutomorphicRMSD
~RRComparerAutomorphicRMSDCreator() :
protocols::rotamer_recovery::RRComparerAutomorphicRMSDCreator
~RRComparerChiDiff() :
protocols::rotamer_recovery::RRComparerChiDiff
~RRComparerChiDiffCreator() :
protocols::rotamer_recovery::RRComparerChiDiffCreator
~RRComparerCreator() :
protocols::rotamer_recovery::RRComparerCreator
~RRComparerElecDensDiff() :
protocols::rotamer_recovery::RRComparerElecDensDiff
~RRComparerElecDensDiffCreator() :
protocols::rotamer_recovery::RRComparerElecDensDiffCreator
~RRComparerRotBins() :
protocols::rotamer_recovery::RRComparerRotBins
~RRComparerRotBinsCreator() :
protocols::rotamer_recovery::RRComparerRotBinsCreator
~RRProtocol() :
protocols::rotamer_recovery::RRProtocol
~RRProtocolCreator() :
protocols::rotamer_recovery::RRProtocolCreator
~RRProtocolMinPack() :
protocols::rotamer_recovery::RRProtocolMinPack
~RRProtocolMinPackCreator() :
protocols::rotamer_recovery::RRProtocolMinPackCreator
~RRProtocolMover() :
protocols::rotamer_recovery::RRProtocolMover
~RRProtocolMoverCreator() :
protocols::rotamer_recovery::RRProtocolMoverCreator
~RRProtocolPackRotamers() :
protocols::rotamer_recovery::RRProtocolPackRotamers
~RRProtocolPackRotamersCreator() :
protocols::rotamer_recovery::RRProtocolPackRotamersCreator
~RRProtocolReferenceStructure() :
protocols::rotamer_recovery::RRProtocolReferenceStructure
~RRProtocolReferenceStructureCreator() :
protocols::rotamer_recovery::RRProtocolReferenceStructureCreator
~RRProtocolRelax() :
protocols::rotamer_recovery::RRProtocolRelax
~RRProtocolRelaxCreator() :
protocols::rotamer_recovery::RRProtocolRelaxCreator
~RRProtocolRotamerTrials() :
protocols::rotamer_recovery::RRProtocolRotamerTrials
~RRProtocolRotamerTrialsCreator() :
protocols::rotamer_recovery::RRProtocolRotamerTrialsCreator
~RRProtocolRTMin() :
protocols::rotamer_recovery::RRProtocolRTMin
~RRProtocolRTMinCreator() :
protocols::rotamer_recovery::RRProtocolRTMinCreator
~RRReporter() :
protocols::rotamer_recovery::RRReporter
~RRReporterCreator() :
protocols::rotamer_recovery::RRReporterCreator
~RRReporterHuman() :
protocols::rotamer_recovery::RRReporterHuman
~RRReporterHumanCreator() :
protocols::rotamer_recovery::RRReporterHumanCreator
~RRReporterSimple() :
protocols::rotamer_recovery::RRReporterSimple
~RRReporterSimpleCreator() :
protocols::rotamer_recovery::RRReporterSimpleCreator
~RRReporterSQLite() :
protocols::rotamer_recovery::RRReporterSQLite
~RRReporterSQLiteCreator() :
protocols::rotamer_recovery::RRReporterSQLiteCreator
~RuntimeFeatures() :
protocols::features::RuntimeFeatures
~SaltBridgeFeatures() :
protocols::features::SaltBridgeFeatures
~SaltBridgeFeaturesCreator() :
protocols::features::SaltBridgeFeaturesCreator
~SameChiBinComboGrouper() :
protocols::match::output::SameChiBinComboGrouper
~SameRotamerComboGrouper() :
protocols::match::output::SameRotamerComboGrouper
~SameSequenceAndDSPositionGrouper() :
protocols::match::output::SameSequenceAndDSPositionGrouper
~SameSequenceGrouper() :
protocols::match::output::SameSequenceGrouper
~SameStrand() :
protocols::jumping::SameStrand
~SampleApplier() :
protocols::stepwise::screener::SampleApplier
~SampleStrategyData() :
protocols::match::upstream::SampleStrategyData
~SandwichFeatures() :
protocols::features::strand_assembly::SandwichFeatures
~SandwichFeaturesCreator() :
protocols::features::strand_assembly::SandwichFeaturesCreator
~SandwichFragment() :
protocols::features::strand_assembly::SandwichFragment
~SaneMinMover() :
protocols::simple_moves::SaneMinMover
~SaveAndRetrieveSidechains() :
protocols::protein_interface_design::movers::SaveAndRetrieveSidechains
~SavePoseConstraintToFileFilter() :
protocols::simple_filters::SavePoseConstraintToFileFilter
~SavePoseMover() :
protocols::rosetta_scripts::SavePoseMover
~SaveResfileToDiskFilter() :
protocols::simple_filters::SaveResfileToDiskFilter
~SAXSScoreFilter() :
protocols::simple_filters::SAXSScoreFilter
~ScaffoldBuildPoint() :
protocols::match::upstream::ScaffoldBuildPoint
~ScaleAnnealerTemperatureOperation() :
protocols::optimize_weights::ScaleAnnealerTemperatureOperation
~ScaleMapIntensities() :
protocols::electron_density::ScaleMapIntensities
~Scheduler() :
protocols::mpi_refinement::Scheduler
~ScoreEvaluator() :
protocols::simple_filters::ScoreEvaluator
~ScoreFunctionFeatures() :
protocols::features::ScoreFunctionFeatures
~ScoreFunctionFeaturesCreator() :
protocols::features::ScoreFunctionFeaturesCreator
~ScoreFunctionLoader() :
protocols::jd2::parser::ScoreFunctionLoader
~ScoreMap() :
protocols::jd2::ScoreMap
~ScoreMover() :
protocols::simple_moves::ScoreMover
~ScoreNormalization() :
protocols::qsar::scoring_grid::ScoreNormalization
~Scorer() :
protocols::stepwise::screener::Scorer
~ScoreTypeFeatures() :
protocols::features::ScoreTypeFeatures
~ScoreTypeFeaturesCreator() :
protocols::features::ScoreTypeFeaturesCreator
~ScoreTypeFilter() :
protocols::simple_filters::ScoreTypeFilter
~ScoringGridLoader() :
protocols::qsar::scoring_grid::ScoringGridLoader
~ScoringSecMatchRPE() :
protocols::match::downstream::ScoringSecMatchRPE
~ScreeningFeatures() :
protocols::features::ScreeningFeatures
~ScreeningFeaturesCreator() :
protocols::features::ScreeningFeaturesCreator
~ScreeningJobInputter() :
protocols::jd2::ScreeningJobInputter
~ScriptCM() :
protocols::environment::ScriptCM
~SecMatchResiduePairEvaluator() :
protocols::match::downstream::SecMatchResiduePairEvaluator
~SecondaryMatcherToDownstreamResidue() :
protocols::match::downstream::SecondaryMatcherToDownstreamResidue
~SecondaryMatcherToUpstreamResidue() :
protocols::match::downstream::SecondaryMatcherToUpstreamResidue
~SecondaryMatchProtocol() :
protocols::enzdes::SecondaryMatchProtocol
~SecondarySimilarity() :
protocols::frag_picker::scores::SecondarySimilarity
~SecondaryStructureCountFilter() :
protocols::fldsgn::filters::SecondaryStructureCountFilter
~SecondaryStructureFilter() :
protocols::fldsgn::filters::SecondaryStructureFilter
~SecondaryStructureHasResidueFilter() :
protocols::fldsgn::filters::SecondaryStructureHasResidueFilter
~SecondaryStructureMPM() :
protocols::match::SecondaryStructureMPM
~SecondaryStructurePool() :
protocols::frag_picker::quota::SecondaryStructurePool
~SecondaryStructureSegmentFeatures() :
protocols::features::SecondaryStructureSegmentFeatures
~SecondaryStructureSegmentFeaturesCreator() :
protocols::features::SecondaryStructureSegmentFeaturesCreator
~SeedFoldTree() :
protocols::seeded_abinitio::SeedFoldTree
~SeedSetupMover() :
protocols::seeded_abinitio::SeedSetupMover
~SegmentHybridizer() :
protocols::seeded_abinitio::SegmentHybridizer
~SegmentInsert() :
protocols::forge::build::SegmentInsert
~SegmentRebuild() :
protocols::forge::build::SegmentRebuild
~SegmentSwap() :
protocols::forge::build::SegmentSwap
~SelectByDeltaScoreOperation() :
protocols::toolbox::task_operations::SelectByDeltaScoreOperation
~SelectByDensityFitOperation() :
protocols::toolbox::task_operations::SelectByDensityFitOperation
~SelectBySASAOperation() :
protocols::toolbox::task_operations::SelectBySASAOperation
~SelectGdtEvaluator() :
protocols::simple_filters::SelectGdtEvaluator
~SelectResiduesByLayer() :
protocols::toolbox::SelectResiduesByLayer
~SelectResiduesWithinChainOperation() :
protocols::toolbox::task_operations::SelectResiduesWithinChainOperation
~SeparateDnaFromNonDna() :
protocols::dna::SeparateDnaFromNonDna
~SeqprofConsensusOperation() :
protocols::toolbox::task_operations::SeqprofConsensusOperation
~SequenceCoupling1BDConstraint() :
protocols::constraints_additional::SequenceCoupling1BDConstraint
~SequenceCoupling1BDConstraintCreator() :
protocols::constraints_additional::SequenceCoupling1BDConstraintCreator
~SequenceCouplingConstraint() :
protocols::constraints_additional::SequenceCouplingConstraint
~SequenceCouplingConstraintCreator() :
protocols::constraints_additional::SequenceCouplingConstraintCreator
~SequenceProfileMover() :
protocols::simple_moves::SequenceProfileMover
~SequenceRecoveryFilter() :
protocols::protein_interface_design::filters::SequenceRecoveryFilter
~Serial_Refine() :
protocols::mpi_refinement::Serial_Refine
~SetAACompositionPotential() :
protocols::fldsgn::potentials::SetAACompositionPotential
~SetAtomTree() :
protocols::protein_interface_design::movers::SetAtomTree
~SetCatalyticResPackBehavior() :
protocols::enzdes::SetCatalyticResPackBehavior
~SetChiMover() :
protocols::simple_moves::sidechain_moves::SetChiMover
~SetIGTypeOperation() :
protocols::toolbox::task_operations::SetIGTypeOperation
~SetMembraneCenterMover() :
protocols::membrane::SetMembraneCenterMover
~SetMembraneNormalMover() :
protocols::membrane::SetMembraneNormalMover
~SetMembranePositionMover() :
protocols::membrane::SetMembranePositionMover
~SetSecStructEnergies() :
protocols::fldsgn::potentials::SetSecStructEnergies
~SetTemperatureFactor() :
protocols::protein_interface_design::movers::SetTemperatureFactor
~SetTorsion() :
protocols::simple_moves::SetTorsion
~SetupForFibrilMover() :
protocols::fibril::SetupForFibrilMover
~SetupForSymmetryMover() :
protocols::simple_moves::symmetry::SetupForSymmetryMover
~SetupHotspotConstraintsLoopsMover() :
protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover
~SetupHotspotConstraintsMover() :
protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
~SetupNCSMover() :
protocols::simple_moves::symmetry::SetupNCSMover
~SetupPoissonBoltzmannPotential() :
protocols::pb_potential::SetupPoissonBoltzmannPotential
~SetupPoissonBoltzmannPotentialCreator() :
protocols::pb_potential::SetupPoissonBoltzmannPotentialCreator
~SF_Replica() :
protocols::toolbox::SF_Replica
~ShakeStructureMover() :
protocols::simple_moves::ShakeStructureMover
~ShapeComplementarityFilter() :
protocols::simple_filters::ShapeComplementarityFilter
~ShapeGrid() :
protocols::qsar::scoring_grid::ShapeGrid
~ShearMinCCDTrial() :
protocols::loops::loop_mover::refine::ShearMinCCDTrial
~ShearMinCCDTrialCreator() :
protocols::loops::loop_mover::refine::ShearMinCCDTrialCreator
~ShearMover() :
protocols::simple_moves::ShearMover
~Sheet() :
protocols::fldsgn::topology::Sheet
~SheetBuilder() :
protocols::jumping::SheetBuilder
~SheetConstraintsRCG() :
protocols::fldsgn::SheetConstraintsRCG
~SheetFilter() :
protocols::simple_filters::SheetFilter
~SheetSet() :
protocols::fldsgn::topology::SheetSet
~SheetTopologyFilter() :
protocols::fldsgn::filters::SheetTopologyFilter
~ShortBackrubMover() :
protocols::simple_moves::ShortBackrubMover
~ShuffleFileSystemJobDistributor() :
protocols::jd2::ShuffleFileSystemJobDistributor
~SICFast() :
protocols::sic_dock::SICFast
~SidechainContactDistCutoff() :
protocols::frag_picker::SidechainContactDistCutoff
~SideChainCopier() :
protocols::stepwise::modeler::packer::SideChainCopier
~SidechainMCMover() :
protocols::simple_moves::sidechain_moves::SidechainMCMover
~SidechainMetropolisHastingsMover() :
protocols::canonical_sampling::SidechainMetropolisHastingsMover
~SidechainMinMover() :
protocols::docking::SidechainMinMover
~SidechainMover() :
protocols::simple_moves::sidechain_moves::SidechainMover
~SidechainMoverBase() :
protocols::simple_moves::sidechain_moves::SidechainMoverBase
~SidechainRmsdFilter() :
protocols::simple_filters::SidechainRmsdFilter
~Sigmoid() :
protocols::simple_filters::Sigmoid
~SilentFileInputter() :
protocols::inputter::SilentFileInputter
~SilentFileJobInputter() :
protocols::jd2::SilentFileJobInputter
~SilentFileJobOutputter() :
protocols::jd2::SilentFileJobOutputter
~SilentFileOutputter() :
protocols::outputter::SilentFileOutputter
~SilentObserver() :
protocols::viewer::SilentObserver
~SilentStructStore() :
protocols::wum::SilentStructStore
~SimplePoseSelection() :
protocols::stepwise::legacy::screener::SimplePoseSelection
~SimpleRMSD_Screener() :
protocols::stepwise::legacy::screener::SimpleRMSD_Screener
~SingleDownstreamResidueWriter() :
protocols::match::output::SingleDownstreamResidueWriter
~SingleFileBuffer() :
protocols::jd2::SingleFileBuffer
~SingleFragmentMover() :
protocols::nonlocal::SingleFragmentMover
~SingleGrid() :
protocols::qsar::scoring_grid::SingleGrid
~SingleResidueInvrotTarget() :
protocols::toolbox::match_enzdes_util::SingleResidueInvrotTarget
~SingleResidueTorsionFragmentLibrary() :
protocols::frags::SingleResidueTorsionFragmentLibrary
~SingleState() :
protocols::multistate_design::SingleState
~SingleStateEntityData() :
protocols::multistate_design::SingleStateEntityData
~SingleStateFitnessFunction() :
protocols::multistate_design::SingleStateFitnessFunction
~SingleStructureData() :
protocols::optimize_weights::SingleStructureData
~SlicedPoseWorkingParameters() :
protocols::stepwise::legacy::modeler::rna::SlicedPoseWorkingParameters
~SlideTogether() :
protocols::ligand_docking::SlideTogether
~SlidingWindowLoopClosure() :
protocols::loops::loop_closure::ccd::SlidingWindowLoopClosure
~SmallMinCCDTrial() :
protocols::loops::loop_mover::refine::SmallMinCCDTrial
~SmallMinCCDTrialCreator() :
protocols::loops::loop_mover::refine::SmallMinCCDTrialCreator
~SmallMol() :
protocols::pockets::SmallMol
~SmallMover() :
protocols::simple_moves::SmallMover
~SmoothFragmentMover() :
protocols::simple_moves::SmoothFragmentMover
~SmotifFeatures() :
protocols::features::SmotifFeatures
~SmotifFeaturesCreator() :
protocols::features::SmotifFeaturesCreator
~SnugDock() :
protocols::antibody::SnugDock
~SnugDockProtocol() :
protocols::antibody::SnugDockProtocol
~SolvationGrid() :
protocols::qsar::scoring_grid::SolvationGrid
~SolvationMetaGrid() :
protocols::qsar::scoring_grid::SolvationMetaGrid
~SolventAccessibility() :
protocols::frag_picker::scores::SolventAccessibility
~SourcePositions() :
protocols::coarse_rna::SourcePositions
~SpanFileLoader() :
protocols::membrane::io::SpanFileLoader
~SpanFileOptions() :
protocols::membrane::io::SpanFileOptions
~Sparta() :
protocols::sparta::Sparta
~SpecialRotamerRSO() :
protocols::toolbox::rotamer_set_operations::SpecialRotamerRSO
~SpecificResiduesNearInterfaceFilter() :
protocols::protein_interface_design::filters::SpecificResiduesNearInterfaceFilter
~Spin() :
protocols::noesy_assign::CrossPeak::Spin
~SpinMover() :
protocols::protein_interface_design::movers::SpinMover
~SS_Base() :
protocols::fldsgn::topology::SS_Base
~SS_Info2() :
protocols::fldsgn::topology::SS_Info2
~SS_predictor() :
protocols::ss_prediction::SS_predictor
~SSamountFilter() :
protocols::protein_interface_design::filters::SSamountFilter
~SSMotifFinder() :
protocols::simple_filters::SSMotifFinder
~SSPairPotential() :
protocols::fldsgn::potentials::sspot::SSPairPotential
~StartFrom() :
protocols::ligand_docking::StartFrom
~StateAccumulatingMatchFilter() :
protocols::match::output::StateAccumulatingMatchFilter
~StemFinder() :
protocols::simple_filters::StemFinder
~StepWiseBasicModelerOptions() :
protocols::stepwise::modeler::options::StepWiseBasicModelerOptions
~StepWiseBasicOptions() :
protocols::stepwise::options::StepWiseBasicOptions
~StepWiseBasicWorkingParameters() :
protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters
~StepWiseClusterer() :
protocols::stepwise::modeler::align::StepWiseClusterer
~StepWiseConnectionSampler() :
protocols::stepwise::modeler::StepWiseConnectionSampler
~StepWiseCSA_JobDistributor() :
protocols::stepwise::setup::StepWiseCSA_JobDistributor
~StepWiseLegacyClusterer() :
protocols::stepwise::modeler::align::StepWiseLegacyClusterer
~StepWiseLegacyClustererSilentBased() :
protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
~StepWiseMasterPacker() :
protocols::stepwise::modeler::packer::StepWiseMasterPacker
~StepWiseMinimizer() :
protocols::stepwise::modeler::StepWiseMinimizer
~StepWiseModeler() :
protocols::stepwise::modeler::StepWiseModeler
~StepWiseModelerOptions() :
protocols::stepwise::modeler::options::StepWiseModelerOptions
~StepWiseMonteCarlo() :
protocols::stepwise::monte_carlo::StepWiseMonteCarlo
~StepWiseMonteCarloJobDistributor() :
protocols::stepwise::setup::StepWiseMonteCarloJobDistributor
~StepWiseMonteCarloOptions() :
protocols::stepwise::monte_carlo::options::StepWiseMonteCarloOptions
~StepWisePacker() :
protocols::stepwise::modeler::packer::StepWisePacker
~StepWisePoseAligner() :
protocols::stepwise::modeler::align::StepWisePoseAligner
~StepWiseProteinBackboneSampler() :
protocols::stepwise::modeler::protein::StepWiseProteinBackboneSampler
~StepWiseProteinCCD_Closer() :
protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_Closer
~StepWiseProteinCCD_MultiPoseCloser() :
protocols::stepwise::modeler::protein::loop_close::StepWiseProteinCCD_MultiPoseCloser
~StepWiseProteinKIC_LoopBridger() :
protocols::stepwise::modeler::protein::loop_close::StepWiseProteinKIC_LoopBridger
~StepWiseProteinMinimizer() :
protocols::stepwise::legacy::modeler::protein::StepWiseProteinMinimizer
~StepWiseProteinModelerOptions() :
protocols::stepwise::modeler::options::StepWiseProteinModelerOptions
~StepWiseProteinPoseSetup() :
protocols::stepwise::legacy::modeler::protein::StepWiseProteinPoseSetup
~StepWiseResiduePairScreener() :
protocols::stepwise::screener::StepWiseResiduePairScreener
~StepWiseRNA_Clusterer() :
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Clusterer
~StepWiseRNA_CombineLongLoopFilterer() :
protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
~StepWiseRNA_CountStruct() :
protocols::stepwise::modeler::rna::StepWiseRNA_CountStruct
~StepWiseRNA_Minimizer() :
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_Minimizer
~StepWiseRNA_ModelerOptions() :
protocols::stepwise::modeler::options::StepWiseRNA_ModelerOptions
~StepWiseRNA_PoseSelection() :
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSelection
~StepWiseRNA_PoseSetup() :
protocols::stepwise::legacy::modeler::rna::StepWiseRNA_PoseSetup
~StepWiseRNA_VirtualSugarJustInTimeInstantiator() :
protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarJustInTimeInstantiator
~StepWiseRNA_VirtualSugarSampler() :
protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarSampler
~StepWiseRNA_VirtualSugarSamplerFromStringList() :
protocols::stepwise::modeler::rna::sugar::StepWiseRNA_VirtualSugarSamplerFromStringList
~StepWiseSampleAndScreen() :
protocols::stepwise::StepWiseSampleAndScreen
~StepWiseSamplerAny() :
protocols::stepwise::sampler::StepWiseSamplerAny
~StepWiseSamplerBase() :
protocols::stepwise::sampler::StepWiseSamplerBase
~StepWiseSamplerComb() :
protocols::stepwise::sampler::StepWiseSamplerComb
~StepWiseSamplerOneTorsion() :
protocols::stepwise::sampler::StepWiseSamplerOneTorsion
~StepWiseSamplerOneValue() :
protocols::stepwise::sampler::StepWiseSamplerOneValue
~StepWiseSamplerOneValueComb() :
protocols::stepwise::sampler::StepWiseSamplerOneValueComb
~StepWiseSamplerSized() :
protocols::stepwise::sampler::StepWiseSamplerSized
~StepWiseSamplerSizedAny() :
protocols::stepwise::sampler::StepWiseSamplerSizedAny
~StepWiseSamplerSizedComb() :
protocols::stepwise::sampler::StepWiseSamplerSizedComb
~StepWiseScreener() :
protocols::stepwise::screener::StepWiseScreener
~StepWiseWorkingParameters() :
protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters
~StepWiseWorkingParametersSetup() :
protocols::stepwise::legacy::modeler::rna::StepWiseWorkingParametersSetup
~StochasticFilter() :
protocols::filters::StochasticFilter
~StoreCombinedStoredTasksMover() :
protocols::toolbox::task_operations::StoreCombinedStoredTasksMover
~StoreCompoundTaskMover() :
protocols::toolbox::task_operations::StoreCompoundTaskMover
~StoreTaskMover() :
protocols::toolbox::task_operations::StoreTaskMover
~Strand() :
protocols::fldsgn::topology::Strand
~StrandBundleFeaturesCreator() :
protocols::features::strand_assembly::StrandBundleFeaturesCreator
~StrandConstraints() :
protocols::abinitio::StrandConstraints
~StrandFragment() :
protocols::features::strand_assembly::StrandFragment
~StrandPairing() :
protocols::fldsgn::topology::StrandPairing
~StrandPairingSet() :
protocols::fldsgn::topology::StrandPairingSet
~StructAvrgMover() :
protocols::mpi_refinement::StructAvrgMover
~StructPerturberCM() :
protocols::abinitio::abscript::StructPerturberCM
~StructuralSimilarityEvaluator() :
protocols::simple_filters::StructuralSimilarityEvaluator
~StructureFeatures() :
protocols::features::StructureFeatures
~StructureFeaturesCreator() :
protocols::features::StructureFeaturesCreator
~StructureRestrictor() :
protocols::moves::StructureRestrictor
~StructureScoresFeatures() :
protocols::features::StructureScoresFeatures
~StructureScoresFeaturesCreator() :
protocols::features::StructureScoresFeaturesCreator
~StructureSimilarityEvaluatorCreator() :
protocols::simple_filters::StructureSimilarityEvaluatorCreator
~StubApplier() :
protocols::stepwise::screener::StubApplier
~StubDistanceScreener() :
protocols::stepwise::screener::StubDistanceScreener
~StubScoreFilter() :
protocols::protein_interface_design::filters::StubScoreFilter
~StubScoreLoopsFilter() :
protocols::protein_interface_design::filters::StubScoreLoopsFilter
~SubroutineMover() :
protocols::protein_interface_design::movers::SubroutineMover
~SugarInstantiateMover() :
protocols::stepwise::modeler::rna::sugar::SugarInstantiateMover
~SugarInstantiator() :
protocols::stepwise::screener::SugarInstantiator
~SugarModeling() :
protocols::stepwise::modeler::rna::sugar::SugarModeling
~SugarVirtualizeMover() :
protocols::stepwise::modeler::rna::sugar::SugarVirtualizeMover
~SuggestValueMessage() :
protocols::topology_broker::SuggestValueMessage
~SuperimposeMover() :
protocols::simple_moves::SuperimposeMover
~SurfaceCalculator() :
protocols::toolbox::pose_metric_calculators::SurfaceCalculator
~SurfaceDockingProtocol() :
protocols::surface_docking::SurfaceDockingProtocol
~SurfaceOrientMover() :
protocols::surface_docking::SurfaceOrientMover
~SurfaceParameters() :
protocols::surface_docking::SurfaceParameters
~SurfaceVectorLoader() :
protocols::surface_docking::SurfaceVectorLoader
~SurfaceVectorOptions() :
protocols::surface_docking::SurfaceVectorOptions
~SWA_Move() :
protocols::stepwise::monte_carlo::SWA_Move
~SWA_MoveSelector() :
protocols::stepwise::monte_carlo::SWA_MoveSelector
~SwapSegment() :
protocols::seeded_abinitio::SwapSegment
~SymDockBaseProtocol() :
protocols::symmetric_docking::SymDockBaseProtocol
~SymDockingHiRes() :
protocols::symmetric_docking::SymDockingHiRes
~SymDockingInitialPerturbation() :
protocols::simple_moves::symmetry::SymDockingInitialPerturbation
~SymDockingLowRes() :
protocols::symmetric_docking::SymDockingLowRes
~SymDockingSlideIntoContact() :
protocols::simple_moves::symmetry::SymDockingSlideIntoContact
~SymDockProtocol() :
protocols::symmetric_docking::SymDockProtocol
~SymEnergyCutRotamerTrialsMover() :
protocols::simple_moves::symmetry::SymEnergyCutRotamerTrialsMover
~SymFoldandDockMoveRbJumpMover() :
protocols::symmetric_docking::SymFoldandDockMoveRbJumpMover
~SymFoldandDockRbTrialMover() :
protocols::symmetric_docking::SymFoldandDockRbTrialMover
~SymFoldandDockSlideTrialMover() :
protocols::symmetric_docking::SymFoldandDockSlideTrialMover
~SymInterfaceSidechainMinMover() :
protocols::symmetric_docking::SymInterfaceSidechainMinMover
~SymmetricAddMembraneMover() :
protocols::membrane::symmetry::SymmetricAddMembraneMover
~SymmetricMotifFilter() :
protocols::simple_filters::SymmetricMotifFilter
~SymmetricRmsdEvaluator() :
protocols::simple_filters::SymmetricRmsdEvaluator
~SymmetricRMSMover() :
protocols::simple_moves::symmetry::SymmetricRMSMover
~SymmetryClaimer() :
protocols::topology_broker::SymmetryClaimer
~SymmetrySlider() :
protocols::simple_moves::symmetry::SymmetrySlider
~SymMinMover() :
protocols::simple_moves::symmetry::SymMinMover
~SymPackRotamersMover() :
protocols::simple_moves::symmetry::SymPackRotamersMover
~SymRestrictTaskForDocking() :
protocols::symmetric_docking::SymRestrictTaskForDocking
~SymRotamerTrialsMover() :
protocols::simple_moves::symmetry::SymRotamerTrialsMover
~SymShakeStructureMover() :
protocols::simple_moves::symmetry::SymShakeStructureMover
~SymSidechainMinMover() :
protocols::symmetric_docking::SymSidechainMinMover
~SymUnsatHbondFilter() :
protocols::matdes::SymUnsatHbondFilter
~TabooSamplingKinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::TabooSamplingKinematicPerturber
~TagDefinition() :
protocols::stepwise::screener::TagDefinition
~TalosSSSimilarity() :
protocols::frag_picker::scores::TalosSSSimilarity
~TargetRotamerCoords() :
protocols::match::downstream::TargetRotamerCoords
~TaskAwareCsts() :
protocols::protein_interface_design::movers::TaskAwareCsts
~TaskAwareMinMover() :
protocols::simple_moves::TaskAwareMinMover
~TaskAwareSASAFilter() :
protocols::simple_filters::TaskAwareSASAFilter
~TaskAwareScoreTypeFilter() :
protocols::simple_filters::TaskAwareScoreTypeFilter
~TaskOperationFeatures() :
protocols::features::TaskOperationFeatures
~TaskOperationFeaturesCreator() :
protocols::features::TaskOperationFeaturesCreator
~TaskOperationLoader() :
protocols::jd2::parser::TaskOperationLoader
~TaskOperationMPM() :
protocols::match::TaskOperationMPM
~Template() :
protocols::abinitio::Template
~TemplateJumpSetup() :
protocols::abinitio::TemplateJumpSetup
~Templates() :
protocols::abinitio::Templates
~TensorsOptimizer() :
protocols::scoring::methods::pcs2::TensorsOptimizer
,
protocols::scoring::methods::pcs::TensorsOptimizer
~TensorsOptimizer_Ts1() :
protocols::scoring::methods::pcsTs1::TensorsOptimizer_Ts1
~TensorsOptimizer_Ts2() :
protocols::scoring::methods::pcsTs2::TensorsOptimizer_Ts2
~TensorsOptimizer_Ts3() :
protocols::scoring::methods::pcsTs3::TensorsOptimizer_Ts3
~TensorsOptimizer_Ts4() :
protocols::scoring::methods::pcsTs4::TensorsOptimizer_Ts4
~TensorsOptimizerFix() :
protocols::scoring::methods::pcs2::TensorsOptimizerFix
~TensorsOptimizerSvd() :
protocols::scoring::methods::pcs2::TensorsOptimizerSvd
~TerminusDistanceFilter() :
protocols::simple_filters::TerminusDistanceFilter
~TetherLigand() :
protocols::ligand_docking::TetherLigand
~TheozymeInvrotTree() :
protocols::toolbox::match_enzdes_util::TheozymeInvrotTree
~ThermodynamicMover() :
protocols::canonical_sampling::ThermodynamicMover
~ThermodynamicObserver() :
protocols::canonical_sampling::ThermodynamicObserver
~Thermostat() :
protocols::md::Thermostat
~ThreadingMover() :
protocols::comparative_modeling::ThreadingMover
~ThreadSequenceOperation() :
protocols::toolbox::task_operations::ThreadSequenceOperation
~TimeFilter() :
protocols::filters::TimeFilter
~TMHTopologySamplerClaimer() :
protocols::topology_broker::TMHTopologySamplerClaimer
~TopCountOfAllInputs() :
protocols::features::TopCountOfAllInputs
~TopCountOfEachInput() :
protocols::features::TopCountOfEachInput
~TopNByProperty() :
protocols::pose_selectors::TopNByProperty
~TopologyBroker() :
protocols::topology_broker::TopologyBroker
~TopologyBrokerMover() :
protocols::protein_interface_design::movers::TopologyBrokerMover
~TopologyClaimer() :
protocols::topology_broker::TopologyClaimer
~TopologyClaimerFactory() :
protocols::topology_broker::TopologyClaimerFactory
~TopPercentOfAllInputs() :
protocols::features::TopPercentOfAllInputs
~TopPercentOfEachInput() :
protocols::features::TopPercentOfEachInput
~Torsion() :
protocols::protein_interface_design::filters::Torsion
~TorsionDOFMover() :
protocols::simple_moves::TorsionDOFMover
~TorsionFragment() :
protocols::frags::TorsionFragment
~TorsionFragmentLibrary() :
protocols::frags::TorsionFragmentLibrary
~TorsionNormalModeMover() :
protocols::normalmode::TorsionNormalModeMover
~TorsionRestrictedKinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::TorsionRestrictedKinematicPerturber
~TorsionSamplingKinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::TorsionSamplingKinematicPerturber
~TorsionSetMover() :
protocols::simple_moves::TorsionSetMover
~TorsionSweepingKinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::TorsionSweepingKinematicPerturber
~TotalSasaFilter() :
protocols::simple_filters::TotalSasaFilter
~TotalScoreFeatures() :
protocols::features::TotalScoreFeatures
~TrajectoryMapFeatures() :
protocols::features::TrajectoryMapFeatures
~TrajectoryMapFeaturesCreator() :
protocols::features::TrajectoryMapFeaturesCreator
~TrajectoryRecorder() :
protocols::canonical_sampling::TrajectoryRecorder
~TrajectoryReportToDB() :
protocols::features::TrajectoryReportToDB
~TransferBuffer() :
protocols::canonical_sampling::mc_convergence_checks::TransferBuffer
~Transform() :
protocols::ligand_docking::Transform
~TransformIntoMembraneMover() :
protocols::membrane::TransformIntoMembraneMover
~TransientCutpointHandler() :
protocols::stepwise::monte_carlo::mover::TransientCutpointHandler
~Translate() :
protocols::ligand_docking::Translate
~TranslationMover() :
protocols::membrane::TranslationMover
~TranslationRotationMover() :
protocols::membrane::TranslationRotationMover
~TrialCounterObserver() :
protocols::canonical_sampling::TrialCounterObserver
~TrialMover() :
protocols::moves::TrialMover
~triangleIterator() :
protocols::viewer::triangleIterator
~TrisBpyScore() :
protocols::sic_dock::scores::TrisBpyScore
~TruncatedScoreEvaluator() :
protocols::simple_filters::TruncatedScoreEvaluator
~TryRotamers() :
protocols::protein_interface_design::movers::TryRotamers
~Tumble() :
protocols::simple_moves::Tumble
~ubi_e2c_modeler() :
protocols::ub_e2c::ubi_e2c_modeler
~UDPSocketClient() :
protocols::moves::UDPSocketClient
~UnconstrainedTorsionsMover() :
protocols::ligand_docking::UnconstrainedTorsionsMover
~UnfoldedStateEnergyCalculatorJobDistributor() :
protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorJobDistributor
~UnfoldedStateEnergyCalculatorMover() :
protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMover
~UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor() :
protocols::unfolded_state_energy_calculator::UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributor
~UniformRigidBodyCM() :
protocols::rigid::UniformRigidBodyCM
~UniformRigidBodyMover() :
protocols::rigid::UniformRigidBodyMover
~UniformRotationMover() :
protocols::simple_moves::UniformRotationMover
~UniformSphereTransMover() :
protocols::rigid::UniformSphereTransMover
~UniformTranslationMover() :
protocols::simple_moves::UniformTranslationMover
~UnrecognizedAtomFeatures() :
protocols::features::UnrecognizedAtomFeatures
~UnrecognizedAtomFeaturesCreator() :
protocols::features::UnrecognizedAtomFeaturesCreator
~UpdateEnzdesHeaderMover() :
protocols::enzdes::UpdateEnzdesHeaderMover
~UpstreamBuilder() :
protocols::match::upstream::UpstreamBuilder
~UpstreamCollisionFilter() :
protocols::match::output::UpstreamCollisionFilter
~UpstreamDownstreamCollisionFilter() :
protocols::match::output::UpstreamDownstreamCollisionFilter
~UpstreamHitCacher() :
protocols::match::output::UpstreamHitCacher
~UpstreamResidueProcessor() :
protocols::match::upstream::UpstreamResidueProcessor
~UpstreamResTypeGeometry() :
protocols::match::upstream::UpstreamResTypeGeometry
~UserDefinedGroupDiscriminator() :
protocols::simple_moves::UserDefinedGroupDiscriminator
~VallChunk() :
protocols::frag_picker::VallChunk
~VallChunkFilter() :
protocols::frag_picker::VallChunkFilter
~VallProvider() :
protocols::frag_picker::VallProvider
~VallResidue() :
protocols::frag_picker::VallResidue
~ValueEvaluator() :
protocols::enzdes::ValueEvaluator
~VariableVectorExpression() :
protocols::pack_daemon::VariableVectorExpression
~VarLengthBuild() :
protocols::forge::components::VarLengthBuild
~VDW_BinScreener() :
protocols::stepwise::screener::VDW_BinScreener
~VDW_RepScreeninfo() :
protocols::stepwise::modeler::rna::checker::VDW_RepScreeninfo
~VdwGrid() :
protocols::qsar::scoring_grid::VdwGrid
~VectorExpression() :
protocols::pack_daemon::VectorExpression
~VectorExpressionCreator() :
protocols::pack_daemon::VectorExpressionCreator
~VectorFunction() :
protocols::pack_daemon::VectorFunction
~VectorFunction2() :
protocols::pack_daemon::VectorFunction2
~VectorPoseMover() :
protocols::moves::VectorPoseMover
~VicinitySamplingKinematicPerturber() :
protocols::loops::loop_closure::kinematic_closure::VicinitySamplingKinematicPerturber
~VIP_Mover() :
protocols::vip::VIP_Mover
~VIP_Report() :
protocols::vip::VIP_Report
~VirtualRootMover() :
protocols::simple_moves::VirtualRootMover
~VisualizeEmbeddingMover() :
protocols::membrane::visualize::VisualizeEmbeddingMover
~VisualizeMembraneMover() :
protocols::membrane::visualize::VisualizeMembraneMover
~VLB() :
protocols::protein_interface_design::movers::VLB
~VMax() :
protocols::pack_daemon::VMax
~VMaxBy() :
protocols::pack_daemon::VMaxBy
~VMin() :
protocols::pack_daemon::VMin
~VMinBy() :
protocols::pack_daemon::VMinBy
~WaterFeatures() :
protocols::features::WaterFeatures
~WaterFeaturesCreator() :
protocols::features::WaterFeaturesCreator
~WatsonCrickRotamerCouplings() :
protocols::dna::WatsonCrickRotamerCouplings
~WhileMover() :
protocols::moves::WhileMover
~WobbleMover() :
protocols::simple_moves::WobbleMover
~WorkUnit() :
protocols::wum2::WorkUnit
~WorkUnit_BatchRelax() :
protocols::relax::WorkUnit_BatchRelax
~WorkUnit_BatchRelax_and_PostRescore() :
protocols::relax::WorkUnit_BatchRelax_and_PostRescore
~WorkUnit_ElScripts() :
protocols::wum2::WorkUnit_ElScripts
~WorkUnit_MoverWrapper() :
protocols::wum::WorkUnit_MoverWrapper
~WorkUnit_SilentStructStore() :
protocols::wum::WorkUnit_SilentStructStore
~WorkUnit_Wait() :
protocols::wum2::WorkUnit_Wait
,
protocols::wum::WorkUnit_Wait
~WorkUnitBase() :
protocols::wum::WorkUnitBase
~WorkUnitManager() :
protocols::wum::WorkUnitManager
~WorkUnitQueue() :
protocols::wum::WorkUnitQueue
~WorkUnitQueue_Swapped() :
protocols::wum::WorkUnitQueue_Swapped
~WrappedOptEExpressionCreator() :
protocols::optimize_weights::WrappedOptEExpressionCreator
~WrapperOptEMultifunc() :
protocols::optimize_weights::WrapperOptEMultifunc
~WriteFileSFB() :
protocols::jd2::WriteFileSFB
~WriteKinemageOutputter() :
protocols::match::output::WriteKinemageOutputter
~WriteLigandMolFile() :
protocols::ligand_docking::WriteLigandMolFile
~WriteUpstreamCoordinateKinemage() :
protocols::match::output::WriteUpstreamCoordinateKinemage
~WriteUpstreamHitKinemage() :
protocols::match::output::WriteUpstreamHitKinemage
~WUQueue() :
protocols::wum2::WUQueue
~ZincHeterodimerMover() :
protocols::metal_interface::ZincHeterodimerMover
~ZincSiteFinder() :
protocols::metal_interface::ZincSiteFinder
Generated on Sun Mar 1 2015 11:52:33 for Rosetta Protocols by
1.8.7