- j -

• james_debug : options
• jd : app::surface_docking::surface_docking , demo::D060_Folding , docking , loops , test::Workshop7test , test::Workshop8test
• jd1 : app::surface_docking::surface_docking
• jmp_arr : test::T600_Docking
• job_output : demo::D060_Folding , demo::D070_Refinement , demo::D080_Loop_modeling , demo::D100_Docking , demo::D110_DNA_interface , demo::D120_Ligand_interface
• Jobs : BuildBindings
• jobs : demo::D060_Folding , demo::D070_Refinement , demo::D080_Loop_modeling , demo::D100_Docking , demo::D110_DNA_interface , demo::D120_Ligand_interface
• JobTuple : BuildPackagedBindings
• join : extract_scores_and_constraints
• join2 : extract_scores_and_constraints
• jump_num : make_symmdef_file_denovo , test::Workshop7test
• jump_start : make_symmdef_file_denovo
• jump_stop : make_symmdef_file_denovo