- d -

• data : app::delta_score_per_mutation
• data_filename : app::delta_score_per_mutation
• database : toolbox::load_ligand
• DDG_cutoff : protocols::pmut_scan
• ddg_cycles : revert_app
• decoy_num : app::surface_docking::surface_docking
• default : app::pyrosetta_toolkit::modules::DesignBreakdown
• DEFAULT : app::pyrosetta_toolkit::modules::prettytable::prettytable
• default : demo::D010_Pose_structure , demo::D020_Pose_scoring , demo::D030_Fold_tree , demo::D040_Movemap , demo::D050_Packer_task , demo::D060_Folding , demo::D070_Refinement , demo::D080_Loop_modeling , demo::D090_Ala_scan , demo::D100_Docking , demo::D110_DNA_interface , demo::D120_Ligand_interface
• default_buffer_size : utility::io::mpi_stream , zlib_stream
• deg2rad : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• degrees_to_radians : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• deltaE : test::Workshop4test
• description : app::pyrosetta_toolkit::modules::prettytable::setup
• design : revert_app
• design_loop_num : hbs_design , oop_design , peptoid_design
• desn_mc_temp : dddm
• dest : contacts
• dir : app::surface_docking::surface_docking
• disulf_file : app::surface_docking::surface_docking
• disulfide_partner : app::delta_score_per_mutation
• dna_p : test::T880_Other
• dock_hires : test::Workshop7test
• dock_jump : docking , test::T600_Docking
• dock_lowres : test::Workshop7test
• dock_p : test::T600_Docking
• dock_pert : docking , test::T600_Docking
• dock_prot : docking
• docking_highres : docking
• docking_lowres : docking , test::T600_Docking
• dont_mutate_correct_charge : local
• dont_mutate_glyprocys : local
• dont_mutate_hbonded_sidechains : local
• double_mutant_scan : protocols::pmut_scan
• dynamic_prof_calls : basic
• dynamic_prof_total : basic