- a -

• a : test::T850_SubClassing
• a1 : test::Workshop3test
• a2 : test::Workshop3test
• AAs : app::delta_score_per_mutation
• ab_struct : test::G201_Module_Structure
• abinitio : app::surface_docking::surface_docking
• ads : extract_scores_and_constraints
• ads_cycles : app::surface_docking::surface_docking
• ads_inner_cycles : app::surface_docking::surface_docking
• ads_outer_cycles : app::surface_docking::surface_docking
• ads_pdb : extract_scores_and_constraints
• ala : test::T100_Basic
• ALL : app::pyrosetta_toolkit::modules::prettytable::prettytable
• all : utility::options::OptionKeys::options
• alter_spec_disruption_mode : protocols::pmut_scan
• altpos : clean_pdb_keep_ligand
• amino_acids : amino_acids
• analyzer : app::pyrosetta_toolkit::modules::ScoreAnalysis
• anchor_pdb : basic::options::OptionKeys::AnchoredPDBCreator
• ansi_colors : app::pyrosetta_toolkit::window_modules::interactive_terminal::interactive_terminal
• apc : test::T250_Constraints
• APDBC_cycles : basic::options::OptionKeys::AnchoredPDBCreator
• append_surf_ads : app::surface_docking::surface_docking
• append_surf_sol : app::surface_docking::surface_docking
• arglist : contacts
• args : app::delta_score_per_mutation , app::pyrosetta_toolkit::modules::DesignBreakdown , app::surface_docking::surface_docking , loops_kic
• asp_hack : mrlo
• at5C : test::T100_Basic
• at5CA : test::T100_Basic
• at5N : test::T100_Basic
• atom1 : test::T220_AtomAtomPairEnergies
• atom2 : test::T220_AtomAtomPairEnergies
• atomC : test::T100_Basic
• atomCA : test::T100_Basic
• atomN : test::T100_Basic
• ATOMS : PDBInfo
• author : app::pyrosetta_toolkit::modules::prettytable::setup
• author_email : app::pyrosetta_toolkit::modules::prettytable::setup
• AvNAPSA_negative : local
• AvNAPSA_positive : local