Here is a list of all namespace members with links to the namespace documentation for each member:
- h -
- h1_template()
: antibody
, basic::options::OptionKeys::antibody
 
- h2_template()
: antibody
, basic::options::OptionKeys::antibody
 
- h3_filter()
: antibody
, basic::options::OptionKeys::antibody
 
- h3_filter_tolerance()
: antibody
, basic::options::OptionKeys::antibody
 
- h3_no_stem_graft()
: antibody
, basic::options::OptionKeys::antibody
 
- h3_template()
: antibody
, basic::options::OptionKeys::antibody
 
- h_mode
: basic::options::OptionKeys::holes
, holes
 
- handle_structured_xml_error()
: utility::tag
 
- handle_xml_error()
: utility::tag
 
- handle_xml_warning()
: utility::tag
 
- handles_metric_value()
: basic
 
- harmonic_ca_tether
: basic::options::OptionKeys::ddg
, ddg
 
- harmonic_Calphas
: basic::options::OptionKeys::docking::ligand
, docking::ligand
 
- harmonic_torsions
: basic::options::OptionKeys::docking::ligand
, docking::ligand
 
- Haro
: basic::options::OptionKeys::orbitals
, orbitals
 
- harvest
: basic::options::OptionKeys::mh::harvest
, mh::harvest
 
- harvest_motifs
: basic::options::OptionKeys::mh
, mh
 
- harvest_motifs_min_hh_ends
: basic::options::OptionKeys::mh
, mh
 
- harvest_scores
: basic::options::OptionKeys::mh
, mh
 
- has()
: ObjexxFCL
 
- has_any_of()
: ObjexxFCL
 
- has_curl()
: ez_setup
 
- has_equal_operator()
: rosetta_binders
 
- has_insertion_operator()
: rosetta_binders
, utility::type_traits
 
- has_powershell()
: ez_setup
 
- has_prefix()
: ObjexxFCL
 
- has_suffix()
: ObjexxFCL
 
- has_value()
: utility::json_spirit
 
- has_wget()
: ez_setup
 
- hash_2D_vs_3D
: basic::options::OptionKeys::sicdock
, sicdock
 
- hash_angle_resl
: basic::options::OptionKeys::mh::harvest
, mh::harvest
 
- hash_cart_resl
: basic::options::OptionKeys::mh::harvest
, mh::harvest
 
- HASH_FLAG
: fmt
 
- hash_tag_only_terminal_Es
: basic::options::OptionKeys::legacy_sewing
, legacy_sewing
 
- hash_value()
: numeric
 
- hashfile
: basic::options::OptionKeys::hotspot
, hotspot
 
- hb_acc_strength
: basic::options::OptionKeys::score
, score
 
- hb_bb
: basic::options::OptionKeys::mh::filter
, mh::filter
 
- hb_bb_sc
: basic::options::OptionKeys::mh::filter
, mh::filter
 
- hb_cen_soft
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hb_don_strength
: basic::options::OptionKeys::score
, score
 
- hb_exclude_ether_oxygens
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hb_fade_energy
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hb_filter
: basic::options::OptionKeys::flexPepDocking
, flexPepDocking
 
- hb_lrbb
: basic::options::OptionKeys::remodel
, remodel
 
- hb_sc
: basic::options::OptionKeys::mh::filter
, mh::filter
 
- hb_score_cutoff
: basic::options::OptionKeys::motifs
, motifs
 
- hb_sp2_BAH180_rise
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hb_sp2_chipen
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hb_sp2_outer_width
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hb_srbb
: basic::options::OptionKeys::remodel
, remodel
 
- hbe_for_dH2O_aGEN_SP3SC_ssother
: basic::options::OptionKeys::score
, score
 
- hbnet_bonus_function_ramping
: basic::options::OptionKeys::score
, score
 
- hbnet_max_network_size
: basic::options::OptionKeys::score
, score
 
- hbond
: basic::options::OptionKeys::mp::scoring
, mp::scoring
 
- hbond_acceptor_energy_cutoff
: basic::options::OptionKeys::cyclic_peptide
, cyclic_peptide
 
- hbond_bb_per_residue_energy
: basic::options::OptionKeys::score
, score
 
- Hbond_depth_correction
: basic::options::OptionKeys::mp
, mp
 
- hbond_disable_bbsc_exclusion_rule
: basic::options::OptionKeys::score
, score
 
- hbond_energy_cutoff
: basic::options::OptionKeys::cyclic_peptide
, cyclic_peptide
 
- hbond_energy_shift
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hbond_entropy_threshold
: basic::options::OptionKeys::hydrate
, hydrate
 
- hbond_fade
: basic::options::OptionKeys::score
, score
 
- hbond_max_threshold
: basic::options::OptionKeys::motifs
, motifs
 
- hbond_measure_sp3acc_BAH_from_hvy
: basic::options::OptionKeys::corrections::score
, corrections::score
 
- hbond_min_threshold
: basic::options::OptionKeys::motifs
, motifs
 
- hbond_new_sp3_acc
: basic::options::OptionKeys::score
, score
 
- hbond_params
: basic::options::OptionKeys::score
, score
 
- hbond_set
: test::T200_Scoring
, test::Workshop3test
 
- hbond_sp2_correction
: basic::options::OptionKeys::corrections
, corrections
 
- hbond_threshold
: basic::options::OptionKeys::hydrate
, hydrate
 
- hbs_design_positions
: hbs_design
 
- HCF
: basic::options::OptionKeys::testing
, testing
 
- HDX
: basic::options::OptionKeys::in::file
, in::file
 
- head()
: ObjexxFCL
 
- Header
: make_templates
 
- heapCOP
: utility
 
- heapOP
: utility
 
- heat
: basic::options::OptionKeys::rna::denovo
, rna::denovo
 
- heat_convergence_check
: basic::options::OptionKeys::mc
, mc
 
- helical_movement_params
: basic::options::OptionKeys::RBSegmentRelax
, RBSegmentRelax
 
- helical_omega
: basic::options::OptionKeys::remodel
, remodel
 
- helical_radius
: basic::options::OptionKeys::remodel
, remodel
 
- helical_rise
: basic::options::OptionKeys::remodel
, remodel
 
- helical_substructs
: basic::options::OptionKeys::rna::denovo
, rna::denovo
 
- helices_only
: local
 
- helix_end
: basic::options::OptionKeys::mp::benchmark::ideal_helix
, mp::benchmark::ideal_helix
 
- helix_length
: local
 
- helix_pairings
: basic::options::OptionKeys::templates
, templates
 
- helix_start
: basic::options::OptionKeys::mp::benchmark::ideal_helix
, mp::benchmark::ideal_helix
 
- help
: demo::D010_Pose_structure
, demo::D020_Pose_scoring
, demo::D030_Fold_tree
, demo::D040_Movemap
, demo::D050_Packer_task
, demo::D060_Folding
, demo::D070_Refinement
, demo::D080_Loop_modeling
, demo::D090_Ala_scan
, demo::D100_Docking
, demo::D110_DNA_interface
, demo::D120_Ligand_interface
, DRRAFTER
, utility::options::OptionKeys
 
- help_display()
: ObjexxFCL
 
- helper()
: numeric::deriv
 
- hetatm_list
: clean_pdb_keep_ligand
 
- hetatm_map
: DRRAFTER
 
- hex()
: fmt
 
- hex_str_to_char()
: utility::json_spirit
 
- hex_to_num()
: utility::json_spirit
 
- hexu()
: fmt
 
- hh_map
: basic::options::OptionKeys::cm
, cm
 
- HIERARCHICAL_ADD
: basic
 
- HIERARCHICAL_ADD_ELEM_TO_CACHE
: basic
 
- HIERARCHICAL_EVALUATE
: basic
 
- HIERARCHICAL_FIND
: basic
 
- HIERARCHICAL_FIND_ADDRESS
: basic
 
- hierarchical_pool
: basic::options::OptionKeys::mc
, mc
 
- HIERARCHICAL_POOL_SIZE
: basic
 
- HIERARCHICAL_ROUND
: basic
 
- HIERARCHICAL_SORT_ADDRESSES
: basic
 
- HierarchicalDataMapAP
: basic::datacache
 
- HierarchicalDataMapCAP
: basic::datacache
 
- HierarchicalDataMapCOP
: basic::datacache
 
- HierarchicalDataMapOP
: basic::datacache
 
- HIERARCHY_FIND_ADDRESS
: basic
 
- HIERARCHY_GET_NEXT_CANDIDATE
: basic
 
- HIERARCHY_RECV_COORDS
: basic
 
- HIERARCHY_SEND_COORDS
: basic
 
- HIERARCHY_SETUP_TO_RECV
: basic
 
- high_hbond_weight_multiplier
: basic::options::OptionKeys::cyclic_peptide
, cyclic_peptide
 
- high_mem_mode()
: antibody::design
, basic::options::OptionKeys::antibody::design
 
- high_min_patch
: basic::options::OptionKeys::docking
, docking
 
- high_patch
: basic::options::OptionKeys::docking
, docking
 
- highres_conformer_filter_type
: basic::options::OptionKeys::nmr::spinlabel
, nmr::spinlabel
 
- histogram_max
: basic::options::OptionKeys::recces
, recces
 
- histogram_min
: basic::options::OptionKeys::recces
, recces
 
- histogram_spacing
: basic::options::OptionKeys::recces
, recces
 
- HOH_amp_scaling
: basic::options::OptionKeys::score::occ_sol_fitted
, score::occ_sol_fitted
 
- hokey_template_workaround()
: numeric::interpolation::spline
 
- holes
: basic::options::OptionKeys::holes
, holes
 
- hollow()
: test::Workshop9test
 
- homo_file
: basic::options::OptionKeys::lh
, lh
 
- homodimer
: basic::options::OptionKeys::willmatch
, willmatch
 
- homol_csts
: basic::options::OptionKeys::pepspec
, pepspec
 
- homooligomer_swap
: basic::options::OptionKeys::cluster::energy_based_clustering
, cluster::energy_based_clustering
 
- host
: basic::options::OptionKeys::cloud
, basic::options::OptionKeys::inout::dbms
, cloud
, inout::dbms
 
- hotspot
: basic::options::OptionKeys::hotspot
, hotspot
 
- hotspot_filter
: basic::options::OptionKeys::flexPepDocking
, flexPepDocking
 
- hotspot_hash
: basic::options::OptionKeys::cluster
, cluster
 
- HP
: amino_acids
 
- hpcg
: amino_acids
 
- Hpol
: basic::options::OptionKeys::orbitals
, orbitals
 
- hr_intersects_hs()
: numeric::kdtree
 
- hrf_ms_labeling
: basic::options::OptionKeys::in::file
, in::file
 
- hset
: test::Workshop3test
 
- hsv_to_rgb()
: numeric
 
- hterm2
: test::T250_Constraints
 
- html_context
: conf
 
- html_sidebars
: conf
 
- html_split_index
: conf
 
- html_static_path
: conf
 
- html_theme
: conf
 
- html_theme_path
: conf
 
- htmlhelp_basename
: conf
 
- hxl_dist_cutoff
: basic::options::OptionKeys::bunsat_calc2
, bunsat_calc2
 
- hybridize
: basic::options::OptionKeys::cm::hybridize
, cm::hybridize
 
- hydrate
: basic::options::OptionKeys::hydrate
, basic::options::OptionKeys::magnesium
, hydrate
, magnesium
 
- hydrate_all
: basic::options::OptionKeys::hydrate
, hydrate
 
- hydrophobic_polar_pattern
: basic::options::OptionKeys::DenovoProteinDesign
, DenovoProteinDesign
 
- hyfile
: basic::options::OptionKeys::hydrate
, hydrate
 
- hyper_tan()
: numeric::kinematic_closure
 
- HyperRectangleOP
: numeric::kdtree