Here is a list of all namespace members with links to the namespace documentation for each member:
- v -
- V
: test::T110_Numeric
- v
: test::T850_SubClassing
- validate()
: pyrosetta::distributed::tasks::rosetta_scripts
- validate_and_exit
: basic::options::OptionKeys::parser
, parser
- validate_xml_against_xsd()
: utility::tag
- vall
: basic::options::OptionKeys::in::file
, in::file
- vall_file
: basic::options::OptionKeys::loops
, basic::options::OptionKeys::phil
, loops
, phil
- vall_torsions
: basic::options::OptionKeys::rna::denovo
, rna::denovo
- Value
: utility::json_spirit
- value_pH
: basic::options::OptionKeys::pH
, pH
- Value_type
: utility::json_spirit
- ValueCOP
: utility::py
- ValueOP
: utility::py
- values
: test::T040_Types
- VARIABLE
: numeric::expression_parser
- VariableExpressionCOP
: numeric::expression_parser
- VariableExpressionOP
: numeric::expression_parser
- VariableTokenCOP
: numeric::expression_parser
- VariableTokenOP
: numeric::expression_parser
- vary_cutpoints()
: AnchoredDesign
, basic::options::OptionKeys::AnchoredDesign
- vary_frag_size
: basic::options::OptionKeys::templates
, templates
- vary_geometry
: basic::options::OptionKeys::rna
, rna
- vary_loop_length_frequency
: basic::options::OptionKeys::stepwise::monte_carlo
, stepwise::monte_carlo
- vary_polar_hydrogen_geometry
: basic::options::OptionKeys::stepwise::polar_hydrogens
, stepwise::polar_hydrogens
- vdw
: basic::options::OptionKeys::remodel
, remodel
- VDW_atr_rep_screen
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- vdw_delta
: basic::options::OptionKeys::fast_loops
, fast_loops
- VDW_ENERGY
: basic
- VDW_rep_alignment_RMSD_CUTOFF
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- VDW_rep_delete_matching_res
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- VDW_rep_optimize_memory_usage
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- VDW_rep_screen_include_sidechains
: basic::options::OptionKeys::rna::denovo
, rna::denovo
- VDW_rep_screen_info
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- VDW_rep_screen_physical_pose_clash_dist_cutoff
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- VDW_weight()
: AnchoredDesign::testing
, basic::options::OptionKeys::AnchoredDesign::testing
- vdw_weight_stage1()
: abinitio
, basic::options::OptionKeys::abinitio
- vec_diff()
: measure_params
- vec_distance()
: numeric::kdtree
- Vector
: numeric
- vector0_binder
: rosetta_binders
- vector0_bool
: utility
- vector0_char
: utility
- vector0_double
: utility
- vector0_float
: utility
- vector0_int
: utility
- vector0_long
: utility
- vector0_longdouble
: utility
- vector0_schar
: utility
- vector0_short
: utility
- vector0_size
: utility
- vector0_size_t
: utility
- vector0_ssize
: utility
- vector0_ssize_t
: utility
- vector0_uchar
: utility
- vector0_uint
: utility
- vector0_ulong
: utility
- vector0_ushort
: utility
- Vector1()
: pyrosetta
- Vector16
: numeric::kinematic_closure
- vector1_binder
: rosetta_binders
- vector1_bool
: utility
- vector1_char
: utility
- vector1_double
: utility
- vector1_float
: utility
- vector1_int
: utility
- vector1_long
: utility
- vector1_longdouble
: utility
- vector1_schar
: utility
- vector1_short
: utility
- vector1_size
: utility
- vector1_size_t
: utility
- vector1_ssize
: utility
- vector1_ssize_t
: utility
- vector1_uchar
: utility
- vector1_uint
: utility
- vector1_ulong
: utility
- vector1_ushort
: utility
- vector_normal_to_ring_plane_of_best_fit()
: numeric::geometry
- vector_of_xyzvectors_to_FArray()
: numeric
- vectorDiff()
: numeric::kinematic_closure
- vectorL_binder
: rosetta_binders
- vectorsEqual()
: numeric::kinematic_closure
- verbose
: basic::options::OptionKeys::nmr::score
, basic::options::OptionKeys::rescore
- VERBOSE
: basic::options::OptionKeys::stepwise
- verbose
: basic::options
, nmr::score
, rescore
- VERBOSE()
: stepwise
- verbose_sampler
: basic::options::OptionKeys::stepwise
, stepwise
- verbose_scores
: basic::options::OptionKeys::stepwise::monte_carlo
, stepwise::monte_carlo
- version
: basic::options::OptionKeys::run
, conf
, pyrosetta
, run
- vicinity_degree
: basic::options::OptionKeys::loops
, loops
- vicinity_sampling
: basic::options::OptionKeys::loops
, loops
- view()
: antibody::design
, basic::options::OptionKeys::antibody::design
, basic::options::OptionKeys::docking
, basic::options::OptionKeys::flxbb
, basic::options::OptionKeys::membrane
, basic::options::OptionKeys::parser
, basic::options::OptionKeys::view
, docking
, flxbb
, membrane
, parser
, view
- viewer
: basic::options::OptionKeys::mp::viewer
, mp::viewer
- viol
: basic::options::OptionKeys::constraints
, constraints
- viol_level
: basic::options::OptionKeys::constraints
, constraints
- viol_type
: basic::options::OptionKeys::constraints
, constraints
- violation_skip_basis
: basic::options::OptionKeys::fold_cst
, fold_cst
- violation_skip_ignore
: basic::options::OptionKeys::fold_cst
, fold_cst
- vipReportFile
: basic::options::OptionKeys::cp
, cp
- virtual_anchor
: basic::options::OptionKeys::rna::denovo
, rna::denovo
- virtual_nterm
: basic::options::OptionKeys::smhybrid
, smhybrid
- virtual_res
: basic::options::OptionKeys::full_model
, full_model
- virtual_res_files
: basic::options::OptionKeys::smhybrid
, smhybrid
- virtual_sugar_do_minimize
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- virtual_sugar_keep_base_fixed
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- virtual_sugar_legacy_mode
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- virtual_sugar_res
: basic::options::OptionKeys::full_model
, full_model
- virtualize_free_moieties_in_native
: basic::options::OptionKeys::stepwise
, stepwise
- virtualize_packable_moieties_in_screening_pose
: basic::options::OptionKeys::stepwise
, stepwise
- visit()
: utility::graph
- VISITED
: utility::graph
- visualize
: basic::options::OptionKeys::mp::visualize
, mp::visualize
- voids_penalty_energy_cone_distance_cutoff
: basic::options::OptionKeys::score
, score
- voids_penalty_energy_cone_dotproduct_cutoff
: basic::options::OptionKeys::score
, score
- voids_penalty_energy_containing_cones_cutoff
: basic::options::OptionKeys::score
, score
- voids_penalty_energy_disabled_except_during_packing
: basic::options::OptionKeys::score
, score
- voids_penalty_energy_voxel_grid_padding
: basic::options::OptionKeys::score
, score
- voids_penalty_energy_voxel_size
: basic::options::OptionKeys::score
, score
- VOLUME_USED()
: platform::file
- vrt_start_num
: make_symmdef_file_denovo
- vrt_stop_num
: make_symmdef_file_denovo