Here is a list of all namespace members with links to the namespace documentation for each member:

- u -

• UBQ2_lys : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• UBQ2_pdb : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• ubq_ras_distance() : apps::public1::scenarios::chemically_conjugated_docking
• ubq_ras_rotation_angle() : apps::public1::scenarios::chemically_conjugated_docking
• UBQpdb : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• ufv : basic::options::OptionKeys::ufv , ufv
• ufv_loops : basic::options::OptionKeys::ufv , ufv
• uint : platform
• uint64_p : utility::json_spirit
• uint_of() : ObjexxFCL
• ulong_of() : ObjexxFCL
• ULongLong : fmt
• ulr_mulfactor : basic::options::OptionKeys::lh , lh
• UnaryExpressionCOP : numeric::expression_parser
• UnaryExpressionOP : numeric::expression_parser
• unbound_mode() : AnchoredDesign , basic::options::OptionKeys::AnchoredDesign
• unboundrot : basic::options::OptionKeys::packing , packing
• Underline : utility::CSI
• unfolded_energies_file : basic::options::OptionKeys::unfolded_state , unfolded_state
• unfolded_state : basic::options::OptionKeys::unfolded_state , unfolded_state
• unicode_str_to_char() : utility::json_spirit
• uniform() : numeric::random
• uniform_backrub : basic::options::OptionKeys::coupled_moves , coupled_moves
• uniform_RG_COP : numeric::random
• uniform_RG_OP : numeric::random
• uniform_trans : basic::options::OptionKeys::docking , docking
• uniform_vector_sphere() : numeric::random
• uniformfrag : basic::options::OptionKeys::mh::filter , mh::filter
• UniformRotationSamplerCOP : numeric
• UniformRotationSamplerOP : numeric
• unique() : ObjexxFCL
• UniqueConstraintCOP : basic::database::schema_generator
• UniqueConstraintOP : basic::database::schema_generator
• uniqued() : ObjexxFCL
• UNKNOWN_OPTION : utility::options
• unmask_bb : basic::options::OptionKeys::edensity , edensity
• unmodifypot : basic::options::OptionKeys::score , score
• unmute : basic::options::OptionKeys::out , out
• unset_acceptor_ether_oxygens : basic::options::OptionKeys::chemical , chemical
• unsigned_periodic_range() : basic
• upcase() : ObjexxFCL
• update_5way_operation() : numeric
• update_operation() : numeric
• update_pymol_on_conformation_changes_only : basic::options::OptionKeys::run , run
• update_pymol_on_energy_changes_only : basic::options::OptionKeys::run , run
• UPDATE_RESIDUE_COORDINATES : basic
• UPDATE_RESIDUE_NEIGHBORS : basic
• UPDATE_RESIDUE_TORSIONS : basic
• update_source_file() : binder , build
• updown_collision_tolerance : basic::options::OptionKeys::match , match
• updown_residue_collision_score_cutoff : basic::options::OptionKeys::match , match
• updown_residue_collision_Wfa_atr : basic::options::OptionKeys::match , match
• updown_residue_collision_Wfa_rep : basic::options::OptionKeys::match , match
• updown_residue_collision_Wfa_sol : basic::options::OptionKeys::match , match
• upper() : utility
• uppercase() : ObjexxFCL
• UPPERCASE_ALPHANUMERICS() : utility
• UPPERCASE_LETTERS() : utility
• uppercased() : ObjexxFCL
• upstream_residue_collision_score_cutoff : basic::options::OptionKeys::match , match
• upstream_residue_collision_tolerance : basic::options::OptionKeys::match , match
• upstream_residue_collision_Wfa_atr : basic::options::OptionKeys::match , match
• upstream_residue_collision_Wfa_rep : basic::options::OptionKeys::match , match
• upstream_residue_collision_Wfa_sol : basic::options::OptionKeys::match , match
• upweight_interface : basic::options::OptionKeys::pepspec , pepspec
• url : version
• urllib_urlretrieve : pyrosetta::toolbox::rcsb
• urs_norm4() : numeric
• urs_R2ang() : numeric
• use_1jj2_torsions : basic::options::OptionKeys::rna::denovo , rna::denovo
• use_2prime_OH_potential : basic::options::OptionKeys::score::rna , score::rna
• use_6D_potential : basic::options::OptionKeys::score::loop_close , score::loop_close
• use_aa1 : basic::options::OptionKeys::mh::score , mh::score
• use_aa2 : basic::options::OptionKeys::mh::score , mh::score
• use_alpha_germline_templates : basic::options::OptionKeys::tcrmodel , tcrmodel
• use_ambig_constraints : basic::options::OptionKeys::docking::ligand , docking::ligand
• use_beta_germline_templates : basic::options::OptionKeys::tcrmodel , tcrmodel
• use_bicubic_interpolation : basic::options::OptionKeys::corrections::score , corrections::score
• use_blueprint_sequence : basic::options::OptionKeys::remodel , remodel
• use_cart_relax : basic::options::OptionKeys::remodel , remodel
• use_CB : basic::options::OptionKeys::cluster::energy_based_clustering , cluster::energy_based_clustering
• use_cen_score : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• use_chainbreak_energy : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_classic_rama_for_sampling : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_clusters : basic::options::OptionKeys::remodel , remodel
• use_compact_residue_schema : basic::options::OptionKeys::inout::dbms , inout::dbms
• use_cubic_interp : basic::options::OptionKeys::score::loop_close , score::loop_close
• use_DARC_gpu : basic::options::OptionKeys::fingerprint , fingerprint
• use_database : basic::options::OptionKeys::in , basic::options::OptionKeys::out , in , out
• use_electrostatic_repulsion : basic::options::OptionKeys::packing , packing
• use_ellipsoidal_randomization : basic::options::OptionKeys::docking , docking
• use_epitope_constraints() : antibody::design , basic::options::OptionKeys::antibody::design
• use_explicit_water : basic::options::OptionKeys::relax , relax
• use_filters() : abinitio , basic::options::OptionKeys::abinitio
• use_first_jump_for_submotif : basic::options::OptionKeys::stepwise::monte_carlo , stepwise::monte_carlo
• use_fraglib : basic::options::OptionKeys::loodo , loodo
• use_fraglibsc : basic::options::OptionKeys::loodo , loodo
• use_fullmer : basic::options::OptionKeys::ufv , ufv
• use_gaussian_sampling : basic::options::OptionKeys::carbohydrates::glycan_sampler , carbohydrates::glycan_sampler
• use_gen_kirkwood : basic::options::OptionKeys::score , score
• use_general_protocol : basic::options::OptionKeys::loopfcst , loopfcst
• use_green_packer : basic::options::OptionKeys::stepwise , stepwise
• use_gzip : basic::options::OptionKeys::ProQ , ProQ
• use_H3_graft_outliers() : antibody::design , basic::options::OptionKeys::antibody::design
• use_hb_env_dep : basic::options::OptionKeys::score , score
• use_hierarchical_clustering : basic::options::OptionKeys::canonical_sampling::probabilities , canonical_sampling::probabilities
• use_input_bb : basic::options::OptionKeys::pepspec , pepspec
• use_input_sc : basic::options::OptionKeys::packing , packing
• use_legacy_protocol : basic::options::OptionKeys::docking , docking
• use_legacy_setup : basic::options::OptionKeys::rna::denovo , rna::denovo
• use_log : basic::options::OptionKeys::mh::score , mh::score
• use_loop_hash : basic::options::OptionKeys::remodel::RemodelLoopMover , remodel::RemodelLoopMover
• use_loophash_filter() : abinitio , basic::options::OptionKeys::abinitio
• use_mean_cluster_cst_data() : antibody , basic::options::OptionKeys::antibody
• use_occurrence_data : basic::options::OptionKeys::out::file , out::file
• use_octahedral_metal_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_on_repack : basic::options::OptionKeys::patterson , patterson
• use_only_H3_kinked() : antibody::design , basic::options::OptionKeys::antibody::design
• use_outliers() : antibody::design , basic::options::OptionKeys::antibody::design
• use_packer_instead_of_rotamer_trials : basic::options::OptionKeys::stepwise::protein , stepwise::protein
• use_pdb_format_HETNAM_records : basic::options::OptionKeys::out::file , out::file
• use_polarization : basic::options::OptionKeys::score , score
• use_pose_relax : basic::options::OptionKeys::remodel , remodel
• use_precomputed_library : basic::options::OptionKeys::stepwise::monte_carlo , stepwise::monte_carlo
• use_pybind_stl : make_bindings_via_cmake
• use_rama_filter : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_rna_chi_potential : basic::options::OptionKeys::score::rna , score::rna
• use_rotamer_constraints_to_native : basic::options::OptionKeys::ddg , ddg
• use_same_length_fragments : basic::options::OptionKeys::remodel , remodel
• use_setuptools() : ez_setup
• use_spline_interpolation : basic::options::OptionKeys::patterson , patterson
• use_square_planar_metal_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_square_pyramidal_metal_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_ss1 : basic::options::OptionKeys::mh::score , mh::score
• use_ss2 : basic::options::OptionKeys::mh::score , mh::score
• use_symmetry_calc : basic::options::OptionKeys::nmr::pcs , basic::options::OptionKeys::nmr::pre , basic::options::OptionKeys::nmr::rdc , nmr::pcs , nmr::pre , nmr::rdc
• use_TBMB_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_template_sequence : basic::options::OptionKeys::DenovoProteinDesign , DenovoProteinDesign
• use_template_topology : basic::options::OptionKeys::DenovoProteinDesign , DenovoProteinDesign
• use_terminal_residues : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• use_tetrahedral_metal_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_time_as_seed : basic::options::OptionKeys::run , run
• use_TMA_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_trigonal_planar_metal_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_trigonal_pyramidal_metal_filters : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• use_truncated_termini : basic::options::OptionKeys::in , in
• use_unrelaxed_starting_points : basic::options::OptionKeys::cp , cp
• use_user_templates : basic::options::OptionKeys::tcrmodel , tcrmodel
• user : basic::options::OptionKeys::inout::dbms , inout::dbms , utility::options::OptionKeys::options
• user_set_alpha_dihedral_perturbation : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• user_set_alpha_dihedrals : basic::options::OptionKeys::cyclic_peptide , cyclic_peptide
• USER_SITE : ez_setup
• user_tag : basic::options::OptionKeys::out , out
• user_tags : basic::options::OptionKeys::in::file , in::file
• useZ : basic::options::OptionKeys::csa , basic::options::OptionKeys::dc , csa , dc
• ushort_of() : ObjexxFCL
• UtilityExitCallBack : utility