- m -

maca : core::scoring::rna::chemical_shift
MAKE_ROT_LIB : protocols::jd2::JobInputterInputSource
maqw : core::scoring::rna::chemical_shift
maqx : core::scoring::rna::chemical_shift
maqy : core::scoring::rna::chemical_shift
maqz : core::scoring::rna::chemical_shift
Martin : protocols::antibody
marx : core::scoring::rna::chemical_shift
mary : core::scoring::rna::chemical_shift
marz : core::scoring::rna::chemical_shift
MASTER : core::io::pdb
MATCH_AA : core::scoring::motif
MATCH_ALL : core::fragment::rna
MATCH_ANY : core::scoring::motif
MATCH_EXACT : core::fragment::rna
MATCH_HYDROPHOBICITY : core::scoring::motif
MATCH_ROTAMER : core::scoring::motif
MATCH_YR : core::fragment::rna
MATRIX : protocols::cluster::calibur
MAX : protocols::calc_taskop_filters
MAX_TYPE : protocols::noesy_assign
MC_ANY : protocols::toolbox
MC_COMB : protocols::toolbox
MC_LOOP : protocols::toolbox
MC_ONE_TORSION : protocols::toolbox
MC_RNA_KIC : protocols::toolbox
MC_RNA_MULTI_SUITE : protocols::toolbox
MC_RNA_ONE_JUMP : protocols::toolbox
MC_RNA_SUGAR : protocols::toolbox
MC_RNA_SUITE : protocols::toolbox
MCA_accepted_score_beat_last : protocols::moves
MCA_accepted_score_beat_low : protocols::moves
MCA_accepted_thermally : protocols::moves
MCA_rejected : protocols::moves
Mcbeta : core::scoring
Md : core::chemical::element
MDLTYP : core::io::pdb
MEAN : core::scoring::nmr
mean : core::simple_metrics::metrics
MEMBRANE : core::chemical
membrane_span_constraint : core::scoring
membrane_span_term_z_constraint : core::scoring
Menv : core::scoring
Menv_non_helix : core::scoring
Menv_smooth : core::scoring
Menv_termini : core::scoring
Menv_tm_proj : core::scoring
META_ARAMID : core::chemical
METAL : core::chemical
METALBINDING : core::chemical
metalbinding_constraint : core::scoring
metalhash_constraint : core::scoring
METHYL : protocols::noesy_assign
METHYL_GLYCOSIDE : core::chemical
METHYLATED_CTERMINUS : core::chemical
METHYLATED_CTERMINUS_VARIANT : core::chemical
METHYLATED_NA : core::chemical
METHYLATED_NTERM_VARIANT : core::chemical
METHYLATION : core::chemical
Mg : core::chemical::element
mg : core::scoring
MG2_COORDINATION : core::chemical
mg_lig : core::scoring
mg_pair_nblist : core::scoring
mg_ref : core::scoring
mg_sol : core::scoring
MH_end_of_list : protocols::cyclic_peptide::crosslinker
MH_Fe2 : protocols::cyclic_peptide::crosslinker
MH_Ni2 : protocols::cyclic_peptide::crosslinker
MH_unknown_metal : protocols::cyclic_peptide::crosslinker
MH_Zn : protocols::cyclic_peptide::crosslinker
mhc_epitope : core::scoring
MHLigand_end_of_list : protocols::cyclic_peptide::crosslinker
MHLigand_N_pyridine : protocols::cyclic_peptide::crosslinker
MHLigand_Nd_histidine : protocols::cyclic_peptide::crosslinker
MHLigand_Ne_histidine : protocols::cyclic_peptide::crosslinker
MHLigand_O_carboxyl : protocols::cyclic_peptide::crosslinker
MHLigand_S_cysteine : protocols::cyclic_peptide::crosslinker
MHLigand_unknown_ligand : protocols::cyclic_peptide::crosslinker
MIN : protocols::calc_taskop_filters
MIN_AVG_DIST_BASED : protocols::cluster::calibur
minima : protocols::simple_moves::bb_sampler
minimize : protocols::antibody::design
minimize_cartesian : protocols::antibody::design
MinTypeEnum_total : protocols::antibody::design
mirror_backbone_dihedrals : protocols::generalized_kinematic_closure::perturber
missing_res : core::scoring
MIXED_t : core::chemical
Mlipo : core::scoring
mm_bend : core::scoring
mm_disable : core::select::movemap
mm_enable : core::select::movemap
mm_lj_energy_inter_method : core::scoring::methods
mm_lj_inter_atr : core::scoring
MM_LJ_INTER_NBLIST : core::scoring::EnergiesCacheableDataType
mm_lj_inter_rep : core::scoring
mm_lj_intra_atr : core::scoring
mm_lj_intra_atr_ref : core::scoring
MM_LJ_INTRA_NBLIST : core::scoring::EnergiesCacheableDataType
mm_lj_intra_nblist : core::scoring
mm_lj_intra_rep : core::scoring
mm_lj_intra_rep_ref : core::scoring
MM_LJ_TRIE_COLLECTION : core::scoring::EnergiesCacheableDataType
mm_stretch : core::scoring
mm_twist : core::scoring
mm_twist_ref : core::scoring
MMTF_file : core::import_pose
Mn : core::chemical::element
MN2_COORDINATION : core::chemical
Mo : core::chemical::element
MODEL : core::io::pdb
MODIFY_WAS_SUCCESSFUL : protocols::forge::build::BuildInstructionState
MODRES : core::io::pdb
MONOCLINIC : protocols::cryst
MOST_FREQ_BASED : protocols::cluster::calibur
motif_dock : core::scoring
mp_res_data : core::scoring
mp_respair_data : core::scoring
mp_span_ang : core::scoring
Mpair : core::scoring
MPCbeta : core::scoring
MPEnv : core::scoring
MPHelicality : core::scoring
MPLipo : core::scoring
MPNonHelix : core::scoring
MPPair : core::scoring
MPResidueLipophilicity : core::scoring
MPTermini : core::scoring
MPTMProj : core::scoring
mrb_do_not_merge : core::chemical
mrb_merge_w_next : core::chemical
mrb_merge_w_prev : core::chemical
MS_FAIL : protocols::moves
MS_FAIL_BAD_INPUT : protocols::moves
MS_FAIL_DO_NOT_RETRY : protocols::moves
MS_FAIL_RETRY : protocols::moves
MS_SUCCESS : protocols::moves
Mt : core::chemical::element
MTRIX1 : core::io::pdb
MTRIX2 : core::io::pdb
MTRIX3 : core::io::pdb
MU_ATOM : core::chemical
multiple : protocols::pdbinfo_manipulations
multipole_elec : core::scoring
multipole_elec_lr : core::scoring::methods
MULTIPOLE_ELEC_ROTAMER_SET_INFO : core::conformation::RotamerSetCacheableDataType
MUST_CONTROL : protocols::environment::claims