Rosetta: Namespace Members

Rosetta 2020.37

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- p -

P : core::chemical::element
p_aa : core::scoring
p_aa_pp : core::scoring
p_aa_pp_ref : core::scoring
p_aa_ss : core::scoring
Pa : core::chemical::element
paa_abego3 : core::scoring
PACK : protocols::stepwise::screener
pack_stat : core::scoring
PackingAngleEnum_start : protocols::antibody
PackingAngleEnum_total : protocols::antibody
pair : core::scoring
pair_e_method : core::scoring::methods
PARA_ARAMID : core::chemical
PARALLEL : core::chemical::rna
PARAMAGNETIC : core::chemical
PARTITION_CONTACT : protocols::stepwise::screener
partner_downstream : protocols::rigid
partner_upstream : protocols::rigid
patterson_corr_energy : core::scoring::methods
Pb : core::chemical::element
PB_elec : core::scoring
PB_elec_lr : core::scoring::methods
pci_cation_pi : core::scoring
pci_hbond : core::scoring
pci_pi_pi : core::scoring
pci_salt_bridge : core::scoring
pcs : core::scoring
pcs2 : core::scoring
pcsTs1 : core::scoring
pcsTs2 : core::scoring
pcsTs3 : core::scoring
pcsTs4 : core::scoring
Pd : core::chemical::element
pdb_comments : core::io::mmtf
PDB_file : core::import_pose
PDB_FILE : protocols::jd2::JobInputterInputSource
PDB_LIST : protocols::cluster::calibur
pddf_score : core::scoring
PENTOSE : core::chemical
PEPTIDE : protocols::make_rot_lib
peptide_bond : core::scoring
PEPTOID : core::chemical , protocols::make_rot_lib
PERCENT_EDGES : protocols::cluster::calibur
perturb : protocols::generalized_kinematic_closure::perturber
perturb_backbone_by_bins : protocols::generalized_kinematic_closure::perturber
perturb_bondangle : protocols::generalized_kinematic_closure::perturber
perturb_bondlength : protocols::generalized_kinematic_closure::perturber
perturb_dihedral : protocols::generalized_kinematic_closure::perturber
perturb_dihedral_bbg : protocols::generalized_kinematic_closure::perturber
perturbtorsion_gaussian : protocols::simple_moves
perturbtorsion_uniform : protocols::simple_moves
perturbtorsion_unknown : protocols::simple_moves
PG_like : protocols::fldsgn::topology
pH_MODE_EXCEPTIONS : core::pack::palette
PH_PO : core::scoring::motif
PHI : core::chemical::rings , core::id , core::scoring
PHI_ATOM : core::chemical
phi_dihedral : core::id
PHOSPHATE : core::chemical , core::chemical::rna
PHOSPHATE_PACK : protocols::stepwise::screener
PHOSPHONATE : core::chemical
PHOSPHONATE_UPPER : core::chemical
PHOSPHONATE_UPPER_VARIANT : core::chemical
PHOSPHORYLATED_SUGAR : core::chemical
PHOSPHORYLATION : core::chemical
PI_ATOM : core::chemical
PLATFORM : core::scoring::rna
Ploop2x3 : protocols::fldsgn::topology
Ploop3x3 : protocols::fldsgn::topology
Pm : core::chemical::element
PNA : core::chemical
Po : core::chemical::element
pocket_constraint : core::scoring
pointwater : core::scoring
POLAR : core::chemical
POLAR_HYDROGEN : core::chemical
POLAR_SASA : core::scoring::sasa
POLYMER : core::chemical
polymer : protocols::sewing::data_storage
POLYMER_LOWER : core::chemical
POLYMER_UPPER : core::chemical
POSE : protocols::jd2::JobInputterInputSource
pose_cache_real_data : core::io::mmtf
pose_cache_string_data : core::io::mmtf
POSE_SELECTION : protocols::stepwise::screener
PoseCoordPickMode_ALL : core::pose
PoseCoordPickMode_BB : core::pose
PoseCoordPickMode_BNP : core::pose
PoseCoordPickMode_CA : core::pose
PoseCoordPickMode_CB : core::pose
PoseCoordPickMode_CB_else_CA : core::pose
PoseCoordPickMode_CBorCA : core::pose
PoseCoordPickMode_HVY : core::pose
PoseCoordPickMode_HVY_IF_NP : core::pose
PoseCoordPickMode_N_C_O : core::pose
PoseCoordPickMode_N_CA_C : core::pose
PoseCoordPickMode_N_CA_C_CB : core::pose
PoseCoordPickMode_NBR : core::pose
PoseCoordPickMode_NUL : core::pose
POSITIVE_CHARGE : core::chemical
POST_METHYLENE_META_ARAMID : core::chemical
POST_METHYLENE_ORTHO_ARAMID : core::chemical
POST_METHYLENE_PARA_ARAMID : core::chemical
ppo_torbin_A : core::conformation
ppo_torbin_a : core::conformation
ppo_torbin_b : core::conformation
ppo_torbin_B : core::conformation
ppo_torbin_E : core::conformation
ppo_torbin_e : core::conformation
ppo_torbin_g : core::conformation
ppo_torbin_G : core::conformation
ppo_torbin_U : core::conformation
ppo_torbin_X : core::conformation
Pr : core::chemical::element
PRE_METHYLENE_META_ARAMID : core::chemical
PRE_METHYLENE_ORTHO_ARAMID : core::chemical
PRE_METHYLENE_PARA_ARAMID : core::chemical
PRE_METHYLENE_POST_METHYLENE_META_ARAMID : core::chemical
PRE_METHYLENE_POST_METHYLENE_ORTHO_ARAMID : core::chemical
PRE_METHYLENE_POST_METHYLENE_PARA_ARAMID : core::chemical
PRE_SPIN_TYPE_C : core::scoring::nmr
PRE_SPIN_TYPE_H : core::scoring::nmr
PRE_SPIN_TYPE_N : core::scoring::nmr
PREFERENCE_NA : core::scoring::carbohydrates
PREFERRED_ROOT : core::pose::full_model_info
PRF_BASIC : protocols::peptide_deriver
PRF_MARKDOWN : protocols::peptide_deriver
PRIMARY_ATOM : core::chemical
pro_close : core::scoring
pro_close_ref : core::scoring
prob_native_amino_acid : protocols::optimize_weights
prob_native_amino_acid_with_unfolded_energy : protocols::optimize_weights
prob_native_ligand_pose : protocols::optimize_weights
prob_native_rotamer : protocols::optimize_weights
prob_native_structure : protocols::optimize_weights
probability : protocols::simple_moves::bb_sampler
PRODUCT : protocols::calc_taskop_filters
ProQ : core::scoring
ProQM : core::scoring
PROTEIN : core::chemical
PROTEIN_ATR_REP : protocols::stepwise::screener
PROTEIN_BETA_ANTIPARALLEL : protocols::toolbox
PROTEIN_CCD_CLOSURE : protocols::stepwise::screener
PROTEIN_FRAGMENT : protocols::toolbox
PROTEIN_MAIN_CHAIN : protocols::toolbox
protein_torsion_end : core::scoring
proto_h4 : protocols::antibody
proto_l4 : protocols::antibody
PROTONATED : core::chemical
PROTONATED_N1 : core::chemical
PROTONATED_N3 : core::chemical
PseudoBond : core::chemical
PseudoBondOrder : core::chemical
PSF_NEED_FULL_POSE_SET : protocols::rosetta_scripts
PSF_NONE : protocols::rosetta_scripts
PSI : core::scoring
PSI_ATOM : core::chemical
psi_dihedral : core::id
PSM_append : protocols::cyclic_peptide
PSM_insert : protocols::cyclic_peptide
PSM_prepend : protocols::cyclic_peptide
pssm_data : protocols::optimize_weights
Pt : core::chemical::element
PT_angle : core::conformation::parametric
PT_angle_vector : core::conformation::parametric
PT_boolean : core::conformation::parametric
PT_end_of_list : core::conformation::parametric
PT_generic_integer : core::conformation::parametric
PT_generic_integer_vector : core::conformation::parametric
PT_generic_natural_number : core::conformation::parametric
PT_generic_natural_number_vector : core::conformation::parametric
PT_generic_nonnegative_valued_real : core::conformation::parametric
PT_generic_nonnegative_valued_real_vector : core::conformation::parametric
PT_generic_positive_valued_real : core::conformation::parametric
PT_generic_positive_valued_real_vector : core::conformation::parametric
PT_generic_real : core::conformation::parametric
PT_generic_real_vector : core::conformation::parametric
PT_generic_whole_number : core::conformation::parametric
PT_generic_whole_number_vector : core::conformation::parametric
PT_invalid_type : core::conformation::parametric
Pu : core::chemical::element
PURINE : core::chemical
PYMOL_OBSERVER : core::pose::datacache
PYRANOSE : core::chemical
PYRIMIDINE : core::chemical
python : core::scoring