- o -

• O : core::chemical::element , protocols::comparative_modeling::features
• O1_ACETYL_SUGAR : core::chemical
• O1_LACTYL_SUGAR : core::chemical
• O2_ACETYL_SUGAR : core::chemical
• O2_LACTYL_SUGAR : core::chemical
• O2H : core::chemical::rna
• O2PRIME : core::chemical::rna
• O2PRIME_PACK : protocols::stepwise::screener
• O3_ACETYL_SUGAR : core::chemical
• O3_LACTYL_SUGAR : core::chemical
• O3P_TO_O5P : core::pose::rna
• O4_ACETYL_SUGAR : core::chemical
• O4_LACTYL_SUGAR : core::chemical
• O5_ACETYL_SUGAR : core::chemical
• O5_LACTYL_SUGAR : core::chemical
• O6_ACETYL_SUGAR : core::chemical
• O6_LACTYL_SUGAR : core::chemical
• O7_ACETYL_SUGAR : core::chemical
• O7_LACTYL_SUGAR : core::chemical
• O8_ACETYL_SUGAR : core::chemical
• O8_LACTYL_SUGAR : core::chemical
• O9_ACETYL_SUGAR : core::chemical
• O9_LACTYL_SUGAR : core::chemical
• O_CONNECT : core::chemical
• O_p_sp2 : core::chemical::orbitals
• O_p_sp2_bb : core::chemical::orbitals
• O_p_sp3 : core::chemical::orbitals
• O_pi_sp2 : core::chemical::orbitals
• O_pi_sp2_bb : core::chemical::orbitals
• OBSIG : core::scoring::nmr
• OBSLTE : core::io::pdb
• occ_sol_exact : core::scoring
• occ_sol_fitted : core::scoring
• occ_sol_fitted_onebody : core::scoring
• OccFitParam_amp : core::scoring::geometric_solvation
• OccFitParam_cos_angle_mu : core::scoring::geometric_solvation
• OccFitParam_dist_mu : core::scoring::geometric_solvation
• OccFitParam_max_sq_dist : core::scoring::geometric_solvation
• OccFitParam_min_cos_angle : core::scoring::geometric_solvation
• OccFitParam_num_params : core::scoring::geometric_solvation
• OccFitParam_twice_cos_angle_sigma_sq : core::scoring::geometric_solvation
• OccFitParam_twice_dist_sigma_sq : core::scoring::geometric_solvation
• octahedral_metal : protocols::cyclic_peptide
• OCTOSE : core::chemical
• OCTREE : core::conformation
• OD1_CONNECT : core::chemical
• OD2_CONNECT : core::chemical
• OE1_CONNECT : core::chemical
• OE2_CONNECT : core::chemical
• off : protocols::hybridization
• OG1_CONNECT : core::chemical
• OG_CONNECT : core::chemical
• OL_features : protocols::rotamer_recovery
• OL_full : protocols::rotamer_recovery
• OL_none : protocols::rotamer_recovery
• OLIGOUREA : core::chemical
• OMEGA : core::scoring
• omega : core::scoring
• omega2_dihedral : core::id
• omega3_dihedral : core::id
• omega_dihedral : core::id
• omega_ref : core::scoring
• OMICRON_ATOM : core::chemical
• on : protocols::hybridization
• ONE_DOF : protocols::toolbox
• ONE_TORSION : protocols::toolbox
• ONE_VALUE : protocols::toolbox
• ONE_VALUE_COMB : protocols::toolbox
• ONLY_ALPHA_AA_AT_ALPHA_POSITIONS : core::pack::palette
• ONLY_ARAMID_AT_ARAMID_POSITIONS : core::pack::palette
• ONLY_BETA_AA_AT_BETA_POSITIONS : core::pack::palette
• ONLY_DESIGN_POLYMER_RESIDUES : core::pack::palette
• ONLY_DESIGN_PROTEIN_PEPTIOID_DNA_AND_SACCHARIDES : core::pack::palette
• ONLY_DNA_AT_DNA_POSITIONS : core::pack::palette
• ONLY_GAMMA_AA_AT_GAMMA_POSITIONS : core::pack::palette
• ONLY_LIGAND_AT_LIGAND_POSITIONS : core::pack::palette
• ONLY_MATCHING_LIGAND_NAMES : core::pack::palette
• ONLY_OLIGOUREA_AT_OLIGOUREA_POSITIONS : core::pack::palette
• ONLY_RNA_AT_RNA_POSITIONS : core::pack::palette
• ONLY_SACCHARIDES_AT_SACCHARIDE_POSITIONS : core::pack::palette
• OOP_POST : core::chemical
• OOP_PRE : core::chemical
• OR : protocols::filters , protocols::task_operations
• or_logic : core::select::residue_selector
• OrbitalBond : core::chemical
• OrbitalBondOrder : core::chemical
• orbitals_hpol_bb : core::scoring
• ORDERED_SEQUENTIAL : core::conformation::symmetry
• ORIENTATIONS_END : protocols::denovo_design::components
• ORIGX1 : core::io::pdb
• ORIGX2 : core::io::pdb
• ORIGX3 : core::io::pdb
• ORNOT : protocols::filters , protocols::task_operations
• ORTHO_ARAMID : core::chemical
• ORTHORHOMBIC : protocols::cryst
• Os : core::chemical::element
• oshi : core::scoring::rna::chemical_shift
• other_pose : core::scoring
• ou3_aib : core::chemical
• ou3_ala : core::chemical
• ou3_arg : core::chemical
• ou3_asn : core::chemical
• ou3_asp : core::chemical
• ou3_cys : core::chemical
• ou3_gln : core::chemical
• ou3_glu : core::chemical
• ou3_gly : core::chemical
• ou3_his : core::chemical
• ou3_ile : core::chemical
• ou3_leu : core::chemical
• ou3_lys : core::chemical
• ou3_met : core::chemical
• ou3_phe : core::chemical
• ou3_pro : core::chemical
• ou3_ser : core::chemical
• ou3_thr : core::chemical
• ou3_trp : core::chemical
• ou3_tyr : core::chemical
• ou3_val : core::chemical
• out : core::conformation::membrane
• overlap_chainbreak : core::scoring
• OXETOSE : core::chemical
• OXIROSE : core::chemical
• OXY : protocols::match