Here is a list of all namespace members with links to the namespace documentation for each member:

- g -

• G : protocols::comparative_modeling::features
• Ga : core::chemical::element
• GA_MINOR : core::scoring::rna
• gadock_subelement_ct_name() : protocols::ligand_docking::ga_ligand_dock
• GALigandDockCOP : protocols::ligand_docking::ga_ligand_dock
• GALigandDockOP : protocols::ligand_docking::ga_ligand_dock
• GAMMA : core::chemical::rna , core::scoring::dna
• GAMMA_AA : core::chemical
• GAMMA_ATOM : core::chemical
• GAOptimizerCOP : protocols::ligand_docking::ga_ligand_dock
• GAOptimizerOP : protocols::ligand_docking::ga_ligand_dock
• gap_distance() : protocols::hybridization
• GapCloserCOP : protocols::backbone_moves::local_backbone_mover
• GapCloserOP : protocols::backbone_moves::local_backbone_mover
• gapdist() : protocols::loop_grower
• GapSolutionPickerCOP : protocols::backbone_moves::local_backbone_mover::gap_solution_pickers
• GapSolutionPickerOP : protocols::backbone_moves::local_backbone_mover::gap_solution_pickers
• GasConst() : protocols::md
• GasteigerAtomTypeDataCOP : core::chemical::gasteiger
• GasteigerAtomTypeDataOP : core::chemical::gasteiger
• GasteigerAtomTypeSetAP : core::chemical::gasteiger
• GasteigerAtomTypeSetCAP : core::chemical::gasteiger
• GasteigerAtomTypeSetCOP : core::chemical::gasteiger
• GasteigerAtomTypeSetOP : core::chemical::gasteiger
• gather_coords() : protocols::comparative_modeling
• GatherPosesMoverCOP : protocols::cluster
• GatherPosesMoverOP : protocols::cluster
• GAUCHE_EFFECT : core::scoring::carbohydrates
• gauss() : core::scoring::epr_deer , core::scoring
• Gaussian : protocols::ligand_docking
• gaussian_deriv() : core::scoring::constraints
• gaussian_jump_move() : protocols::rigid
• gaussian_stdev() : protocols::recces
• GaussianChainDoubleFuncCOP : core::scoring::func
• GaussianChainDoubleFuncOP : core::scoring::func
• GaussianChainFuncCOP : core::scoring::func
• GaussianChainFuncOP : core::scoring::func
• GaussianChainFuncPotentialEvaluatorCOP : core::scoring::loop_graph::evaluator
• GaussianChainFuncPotentialEvaluatorOP : core::scoring::loop_graph::evaluator
• GaussianChainGeneralFuncCOP : core::scoring::func
• GaussianChainGeneralFuncOP : core::scoring::func
• GaussianChainQuadrupleFuncCOP : core::scoring::func
• GaussianChainQuadrupleFuncOP : core::scoring::func
• GaussianChainSingleFuncCOP : core::scoring::func
• GaussianChainSingleFuncOP : core::scoring::func
• GaussianChainTripleFuncCOP : core::scoring::func
• GaussianChainTripleFuncOP : core::scoring::func
• GaussianFuncOP : core::scoring::func
• GaussianOverlapEnergyCreator_registrator : core::init
• gb_elec : core::scoring
• Gd : core::chemical::element
• gdtha() : core::scoring
• gdtsc() : core::scoring
• Ge : core::chemical::element
• gen_bonded : core::scoring
• gen_bonded_angle : core::scoring
• gen_bonded_bond : core::scoring
• gen_bonded_improper : core::scoring
• gen_bonded_lr : core::scoring::methods
• gen_bonded_torsion : core::scoring
• gen_born_lr : core::scoring::methods
• GEN_BORN_ROTAMER_SET_INFO : core::conformation::RotamerSetCacheableDataType
• gen_kic_add_filter_subelement_mangler() : protocols::generalized_kinematic_closure
• gen_kic_add_pert_subelement_mangler() : protocols::generalized_kinematic_closure
• gen_kic_sample_cis_subelement_mangler() : protocols::generalized_kinematic_closure
• gen_kic_subelement_mangler() : protocols::generalized_kinematic_closure
• gen_mc_ct_namer() : protocols::monte_carlo
• GenBondedExclInfoCOP : core::scoring
• GenBondedExclInfoOP : core::scoring
• GenBornEnergyCreator_registrator : core::init
• GenBornPoseInfoOP : core::scoring
• GenBornPotentialCOP : core::scoring
• GenBornPotentialOP : core::scoring
• GenBornResidueInfoOP : core::scoring
• GenBornRotamerSetInfoOP : core::scoring
• geneate_pose_from_old_state : protocols::pack_daemon
• general_set_phi() : protocols::generalized_kinematic_closure
• general_set_psi() : protocols::generalized_kinematic_closure
• GeneralAntibodyModelerCOP : protocols::antibody::design
• GeneralAntibodyModelerOP : protocols::antibody::design
• generalized_monte_carlo : protocols::antibody::design
• GeneralizedKICCOP : protocols::generalized_kinematic_closure
• GeneralizedKICCOPs : protocols::generalized_kinematic_closure
• GeneralizedKICfilterCOP : protocols::generalized_kinematic_closure::filter
• GeneralizedKICfilterCOPs : protocols::generalized_kinematic_closure::filter
• GeneralizedKICfilterOP : protocols::generalized_kinematic_closure::filter
• GeneralizedKICfilterOPs : protocols::generalized_kinematic_closure::filter
• GeneralizedKICOP : protocols::generalized_kinematic_closure
• GeneralizedKICOPs : protocols::generalized_kinematic_closure
• GeneralizedKICperturberCOP : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICperturberCOPs : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICperturberOP : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICperturberOPs : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICselectorCOP : protocols::generalized_kinematic_closure::selector
• GeneralizedKICselectorCOPs : protocols::generalized_kinematic_closure::selector
• GeneralizedKICselectorOP : protocols::generalized_kinematic_closure::selector
• GeneralizedKICselectorOPs : protocols::generalized_kinematic_closure::selector
• generate_atom_positions() : protocols::helical_bundle
• generate_bb_coordinate_constraints() : protocols::relax
• generate_beta_database_test() : protocols::stepwise::sampler::protein
• generate_centroid_constraints() : protocols::hybridization
• generate_empty_jump_frame() : protocols::jumping
• generate_enum_header_file() : update_ResidueType_enum_files
• generate_extended_pose() : protocols::star
• generate_files() : update_ResidueType_enum_files
• generate_fullatom_constraints() : protocols::hybridization
• generate_jump_frame() : protocols::jumping
• generate_mappings_source_file() : update_ResidueType_enum_files
• generate_pose_from_packer_description() : core::pack::interaction_graph
• generate_prob() : core::io::external
• generate_property_to_string_vector() : core::chemical
• generate_relax_from_cmd() : protocols::relax
• generate_replacement_restype() : core::util
• generate_rigid_from_alignment() : protocols::topology_broker
• generate_rotamers_from_packer_solution_description() : core::pack::interaction_graph
• generate_secstruct_for_length() : protocols::denovo_design::architects
• generate_seqmap_from_poses() : protocols::constraint_generator
• generate_shannon_points() : core::scoring::fiber_diffraction
• GENERATE_STATIONARY_ATTACHMENT_POINT : protocols::environment
• generate_string_to_property_map() : core::chemical
• generate_string_to_variant_map() : core::chemical
• generate_taskfactory_and_add_task_awareness() : protocols::protein_interface_design::movers
• generate_unique_name() : protocols::ligand_docking
• generate_unique_structure_id() : protocols::wum
• generate_variant_to_string_vector() : core::chemical
• generate_vector_from_bounds() : core::pose
• GenerateMainchainPotentialCOP : protocols::mainchain_potential
• GenerateMainchainPotentialOP : protocols::mainchain_potential
• GenerateMainchainPotentialOptionsCOP : protocols::mainchain_potential
• GenerateMainchainPotentialOptionsOP : protocols::mainchain_potential
• GenerateStoredRBConfsCOP : protocols::enzdes
• GenerateStoredRBConfsOP : protocols::enzdes
• GenericBondedEnergyCreator_registrator : core::init
• GenericBondedEnergyOP : core::energy_methods
• GenericBondedPotentialOP : core::scoring
• GenericJobInputterOP : protocols::jd2
• GenericMonteCarloMoverCOP : protocols::monte_carlo
• GenericMonteCarloMoverOP : protocols::monte_carlo
• GenericMonteCarloMoverTrigger : protocols::monte_carlo
• GenericRemodelConstraintGeneratorCOP : protocols::forge::remodel
• GenericRemodelConstraintGeneratorOP : protocols::forge::remodel
• GenericSimulatedAnnealerCOP : protocols::monte_carlo
• GenericSimulatedAnnealerOP : protocols::monte_carlo
• GeneticAlgorithmBaseCOP : protocols::genetic_algorithm
• GeneticAlgorithmBaseOP : protocols::genetic_algorithm
• GeneticAlgorithmCOP : protocols::genetic_algorithm
• GeneticAlgorithmOP : protocols::genetic_algorithm
• GenKICPerturberEffect : protocols::generalized_kinematic_closure::perturber
• GenMeanFieldMoverCOP : protocols::mean_field
• GenMeanFieldMoverOP : protocols::mean_field
• geom_sol : core::scoring
• geom_sol_fast : core::scoring
• geom_sol_fast_intra_RNA : core::scoring
• geom_sol_intra_RNA : core::scoring
• GEOM_SOLV_NBLIST : core::scoring::EnergiesCacheableDataType
• geom_solv_pair_nblist : core::scoring
• GeometricSolEnergyEvaluatorCOP : core::scoring::geometric_solvation
• GeometricSolEnergyEvaluatorOP : core::scoring::geometric_solvation
• GeometricSolvationFeaturesCOP : protocols::features
• GeometricSolvationFeaturesOP : protocols::features
• GEOMETRIES() : core::energy_methods
• geometry : protocols::buns
• GeometrySecMatchRPECOP : protocols::match::downstream
• GeometrySecMatchRPEOP : protocols::match::downstream
• GeomSampleInfoCOP : protocols::toolbox::match_enzdes_util
• GeomSampleInfoOP : protocols::toolbox::match_enzdes_util
• geosol_kT : core::energy_methods
• get_3_letter_codes_from_NA_consensus_sequence() : core::enzymes
• get_3_letter_codes_from_peptide_consensus_sequence() : core::enzymes
• get_5_ss_models_from_db() : protocols::legacy_sewing
• get_6D_trans_rot_potential_evaluator() : core::scoring::loop_graph
• get_A() : core::scoring::electron_density , core::scoring::fiber_diffraction
• get_AA_3_letter_codes_or_punctuation_from_1_letter_code_at_position() : core::enzymes
• get_ab_design_dock_high_scorefxn() : protocols::antibody::design
• get_ab_design_dock_low_scorefxn() : protocols::antibody::design
• get_ab_design_global_scorefxn() : protocols::antibody::design
• get_ab_design_min_scorefxn() : protocols::antibody::design
• get_abego() : core::sequence
• get_AIDs() : core::pose::motif
• get_alignpdbinfotosequencesmode_from_string() : protocols::pdbinfo_manipulations
• get_all_comments() : core::pose
• get_all_glycans_and_neighbor_res_task_factory() : protocols::carbohydrates
• get_all_graft_permutations() : protocols::antibody::design
• get_all_res_list() : protocols::stepwise::monte_carlo
• get_all_residues() : protocols::stepwise::modeler
• get_all_residues_in_this_sheet() : protocols::features::strand_assembly
• get_all_score_line_strings() : core::pose
• get_all_strands_in_sheet_i() : protocols::features::strand_assembly
• get_all_working_moving_res() : protocols::stepwise::modeler
• get_alpha_beta_models_from_db() : protocols::legacy_sewing
• get_anchor_and_root_atoms() : core::conformation
• get_anchor_atomno() : core::conformation
• get_anchor_points_for_tmcom() : protocols::membrane
• get_anchor_res() : protocols::stepwise::modeler::rna
• get_anchor_rsd() : core::import_pose
• get_angles() : core::membrane , core::scoring
• get_annealable_graph_summary() : core::pack::interaction_graph
• get_area_from_cycle() : core::scoring::power_diagram
• get_aro_residues_in_this_sheet() : protocols::features::strand_assembly
• get_asymm_unit_fold_tree() : core::conformation::symmetry
• get_asymmetric_pose_copy_from_symmetric_pose() : core::pose::symmetry
• get_atom_bin() : core::pose::rna
• get_atom_coordinates() : protocols::toolbox::rigid_body
• get_atomic_contacting_sidechains() : protocols::ligand_docking::ga_ligand_dock
• get_atoms_ala() : core::pose::motif
• get_atoms_ala_downstream() : core::pose::motif
• get_atoms_arg() : core::pose::motif
• get_atoms_arg_downstream() : core::pose::motif
• get_atoms_asn() : core::pose::motif
• get_atoms_asn_downstream() : core::pose::motif
• get_atoms_asp() : core::pose::motif
• get_atoms_asp_downstream() : core::pose::motif
• get_atoms_cys() : core::pose::motif
• get_atoms_cys_downstream() : core::pose::motif
• get_atoms_gln() : core::pose::motif
• get_atoms_gln_downstream() : core::pose::motif
• get_atoms_glu() : core::pose::motif
• get_atoms_glu_downstream() : core::pose::motif
• get_atoms_gly() : core::pose::motif
• get_atoms_gly_downstream() : core::pose::motif
• get_atoms_his() : core::pose::motif
• get_atoms_his_downstream() : core::pose::motif
• get_atoms_ile() : core::pose::motif
• get_atoms_ile_downstream() : core::pose::motif
• get_atoms_leu() : core::pose::motif
• get_atoms_leu_downstream() : core::pose::motif
• get_atoms_lys() : core::pose::motif
• get_atoms_lys_downstream() : core::pose::motif
• get_atoms_met() : core::pose::motif
• get_atoms_met_downstream() : core::pose::motif
• get_atoms_phe() : core::pose::motif
• get_atoms_phe_downstream() : core::pose::motif
• get_atoms_pro() : core::pose::motif
• get_atoms_pro_downstream() : core::pose::motif
• get_atoms_ser() : core::pose::motif
• get_atoms_ser_downstream() : core::pose::motif
• get_atoms_thr() : core::pose::motif
• get_atoms_thr_downstream() : core::pose::motif
• get_atoms_trp() : core::pose::motif
• get_atoms_trp_downstream() : core::pose::motif
• get_atoms_tyr() : core::pose::motif
• get_atoms_tyr_downstream() : core::pose::motif
• get_atoms_val() : core::pose::motif
• get_atoms_val_downstream() : core::pose::motif
• get_automorphic_RMSDs() : protocols::ligand_docking
• get_avg_dis_CA_CA() : protocols::features::strand_assembly
• get_avg_dis_strands() : protocols::features::strand_assembly
• get_b1b2_bin() : core::scoring::dna
• get_b1b2_weight() : core::scoring::dna
• get_backbone_reference_frame() : core::pose::motif
• get_backbone_reference_frame_atomids() : core::pose::motif
• get_backbone_reference_frame_atomids_with_downstream() : core::pose::motif
• get_base_centroid_and_rotation_matrix() : protocols::toolbox::rigid_body
• get_base_doublet_orientation_from_LW() : core::pose::rna
• get_base_pair_atoms() : core::chemical::rna
• get_base_pair_params() : core::scoring::dna
• get_base_pair_stub() : core::scoring::dna
• get_base_pair_stub_slow() : core::scoring::dna
• get_base_pair_y_axis_atom_xyz() : core::scoring::dna
• get_base_pairing_info() : core::pose::rna
• get_base_pairing_list() : core::pose::rna
• get_base_step_params() : core::scoring::dna
• get_base_stub() : core::scoring::dna
• get_basic_protein_sampler() : protocols::stepwise::sampler::protein
• get_batch_id() : protocols::features
• get_bb_torsion() : core::pose
• get_bbcsts() : protocols::protein_interface_design
• get_bin() : core::scoring::rna
• get_binary_rna_silent_struct_safe() : protocols::stepwise::modeler::rna
• get_binary_rna_silent_struct_safe_wrapper() : protocols::stepwise::modeler::rna
• get_bins() : core::scoring::motif
• get_bond() : core::chemical
• get_bool_idx() : core::scoring::rna::data
• get_bound_water_res() : protocols::magnesium
• get_bounds_intersection() : protocols::sic_dock
• get_branching_atoms2() : protocols::branch_angle
• get_branching_residues() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_bridge_res() : protocols::stepwise::modeler::protein
• get_buildingblock_and_neighbor_subs() : core::pose::symmetry
• get_bulges() : protocols::denovo_design::components
• get_burial_3() : core::scoring::hbonds
• get_CA_vectors() : core::scoring::dssp , protocols::jumping
• get_candidate_AAs() : protocols::recon_design
• get_carbohydrate_residues_and_tips_of_branch() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_carbohydrate_residues_of_branch() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_carbohydrate_tips_of_branch() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_CB_Vecs_from_map() : protocols::sic_dock
• get_CB_Vecs_from_pose() : protocols::sic_dock
• get_cdr_bool_from_tag() : protocols::antibody
• get_cdr_loops() : protocols::antibody
• get_cdr_set_options() : protocols::antibody::design
• get_cen_scorefxn() : protocols::loops
• get_center_of_mass() : core::pose
• get_central_residues_in_each_of_two_edge_strands() : protocols::features::strand_assembly
• get_central_residues_in_other_sheet() : protocols::features::strand_assembly
• get_central_residues_in_this_sheet() : protocols::features::strand_assembly
• get_chain() : core::import_pose
• get_chain2range() : core::conformation::symmetry
• get_chain_and_z() : protocols::membrane
• get_chain_B_resNum() : protocols::features::strand_assembly
• get_chain_connections() : core::pose::full_model_info
• get_chain_for_full_model_resnum() : core::pose::full_model_info
• get_chain_for_resnum() : core::pose::full_model_info
• get_chain_from_chain_id() : core::pose
• get_chain_from_jump_id() : core::pose
• get_chain_id_from_chain() : core::pose
• get_chain_id_from_jump_id() : core::pose
• get_chain_id_string() : core::conformation::symmetry
• get_chain_ids_from_chain() : core::pose
• get_chain_ids_from_chains() : core::pose
• get_chain_residues() : core::pose
• get_chain_terms() : protocols::constel
• get_chains() : core::pose
• get_chains_from_cutpoint_open() : core::pose::full_model_info
• get_chains_from_pdb_info() : core::pose::full_model_info
• get_chains_full() : core::pose::full_model_info
• get_cheating_frags() : protocols::frags
• get_chemical_root_and_anchor_atomnos() : core::conformation
• get_CHI_energy_function_linkage_type_for_phi_for_residue_in_pose() : core::scoring::carbohydrates
• get_CHI_energy_function_linkage_type_for_psi_for_residue_in_pose() : core::scoring::carbohydrates
• get_CHI_energy_function_linkage_type_for_residue_in_pose() : core::scoring::carbohydrates
• get_chiral_residue_type() : protocols::simple_moves::chiral
• get_chirality_sign() : core::io::pose_from_sfr
• get_closest_chain_ending() : protocols::denovo_design::components
• get_closest_distance_between_strands() : protocols::features::strand_assembly
• get_closest_non_hoh_contact() : protocols::magnesium
• get_closest_orbital_axis() : core::scoring::magnesium
• get_closest_residue_pair() : protocols::seeded_abinitio
• get_closest_sister() : core::io::pose_from_sfr
• get_cluster_from_cache_or_ab_info() : protocols::antibody::clusters
• get_cluster_profile_probability_data() : protocols::antibody::design
• get_codes_from_saccharide_consensus_sequence() : core::enzymes
• get_comment() : core::pose
• get_component_contiguous_foldtree() : core::conformation::symmetry
• get_component_lower_bound() : core::pose::symmetry
• get_component_of_residue() : core::pose::symmetry
• get_component_upper_bound() : core::pose::symmetry
• get_concatenated_sequence() : core::sequence
• get_connecting_atoms() : core::chemical
• get_connection_domains() : core::pose::full_model_info
• get_connection_number() : core::chemical
• get_conserved_residue_list() : protocols::antibody
• get_constraints_from_link_records() : core::pose
• get_contact_features() : protocols::simple_filters
• get_continuous_models_from_db() : protocols::legacy_sewing
• get_conventional_chains_and_numbering() : core::sequence
• get_coordinate_system() : protocols::jumping
• get_copy_dofs_from_fasta() : protocols::stepwise::modeler::rna
• get_core() : protocols::abinitio
• get_corresponding_CAs() : protocols::cryst
• get_cos_angle_to_closest_orbital_axis() : core::scoring::magnesium
• get_cos_theta() : core::scoring::magnesium
• get_crick_params_filename_formatted() : protocols::helical_bundle
• get_cst_fa_file_option() : core::scoring::constraints
• get_cst_file_option() : core::scoring::constraints
• get_cterminal_peptide_bond_reference_frame() : core::pose::motif
• get_cterminal_peptide_bond_reference_frame_atomids() : core::pose::motif
• get_current_bs_id_and_closest_edge_bs_id_in_different_sheet() : protocols::features::strand_assembly
• get_current_default_score_function_name() : core::scoring
• get_current_global_sequence() : core::pose::full_model_info
• get_current_job() : protocols::jd2
• get_current_jobs_starting_pose() : protocols::jd2
• get_current_model_score() : protocols::features
• get_current_strands_in_sheet() : protocols::features::strand_assembly
• get_current_structure_count() : protocols::features
• get_cutpoint_closed() : protocols::stepwise::modeler
• get_cutpoint_open_from_chains() : core::pose::full_model_info
• get_cutpoints() : core::import_pose
• get_cutpoints_from_numbering() : core::import_pose
• get_cycles_from_intersections() : core::scoring::power_diagram
• get_cyclic_pose_residue_mappings_from_selectors() : core::select::residue_selector
• get_D_equivalent() : core::chemical
• get_damped_scale_factors() : core::scoring
• get_damped_scale_factors_with_derivs() : core::scoring
• get_db1b2_weight_deps() : core::scoring::dna
• get_DB_filter_ptr() : protocols::features
• get_default_allowed_bulge_res() : protocols::rna::denovo
• get_definite_terminal_root() : core::pose
• get_delta_magnetic_anisotropy_deriv() : core::scoring::rna::chemical_shift
• get_density_map() : core::scoring::electron_density_atomwise
• get_derivs_from_cycle() : core::scoring::power_diagram
• get_derivs_from_cycles() : core::scoring::power_diagram
• get_design_loops() : protocols::stepwise::monte_carlo::mover
• get_design_sequence_motif_syntax() : core::sequence
• get_designable_residues() : protocols::recon_design
• get_designable_sequence() : protocols::recon_design
• get_deviation() : protocols::loops::loop_closure::ccd
• get_DFIRE_potential() : core::scoring::methods::dfire
• get_discontinuous_models_from_db() : protocols::legacy_sewing
• get_distance_to_start() : core::conformation::carbohydrates
• get_distances() : core::membrane
• get_distinct_sheet_id_from_sheet_table() : protocols::features::strand_assembly
• get_distinct_sw_id_from_sandwich_table() : protocols::features::strand_assembly
• get_distribution() : protocols::ligand_docking
• get_disulf_partner() : core::conformation
• get_DNA_backbone_bin() : core::scoring::dna
• get_dock_chains_from_ab_dock_chains() : protocols::antibody::design
• get_Dock_ScoreFxn() : protocols::antibody
• get_domain_boundary_res() : protocols::stepwise::modeler
• get_domain_boundary_suites() : protocols::stepwise::modeler
• get_downstream_residue_that_this_torsion_moves() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_edge_from_char() : core::chemical::rna , core::scoring::constraints
• get_edge_from_num() : core::chemical::rna
• get_element_color() : core::chemical
• get_embedded_residue_selector() : core::select::residue_selector
• get_embedded_residue_selectors() : core::select::residue_selector
• get_endpoints_from_pose() : protocols::stepwise::modeler
• get_energies() : protocols::moves
• get_environment_dependent_weight() : core::scoring::hbonds
• get_enzcst_io() : protocols::enzdes::enzutil
• get_enzdes_observer() : protocols::toolbox::match_enzdes_util
• get_epsilon_torsions() : core::chemical::rna
• get_euler_angles() : protocols::toolbox::rigid_body
• get_extra_cutpoints_from_names() : core::import_pose
• get_fa_scorefxn() : protocols::loops
• get_fade_correction() : core::scoring::rna
• get_filenames() : protocols::motifs
• get_first_protein_residue() : protocols::toolbox::match_enzdes_util
• get_fixed_domain_from_full_model_info_const() : core::pose::full_model_info
• get_fixed_res() : protocols::stepwise::legacy::modeler::rna
• get_foldtree_seqsep() : protocols::fldsgn::potentials::sspot
• get_foldtree_which_partitions() : core::kinematics
• get_forcefield() : core::chemical::rdkit
• get_frags() : protocols::frags
• get_frame_ala() : core::pose::motif
• get_frame_arg() : core::pose::motif
• get_frame_asn() : core::pose::motif
• get_frame_asp() : core::pose::motif
• get_frame_cys() : core::pose::motif
• get_frame_gln() : core::pose::motif
• get_frame_glu() : core::pose::motif
• get_frame_gly() : core::pose::motif
• get_frame_his() : core::pose::motif
• get_frame_ile() : core::pose::motif
• get_frame_leu() : core::pose::motif
• get_frame_lys() : core::pose::motif
• get_frame_met() : core::pose::motif
• get_frame_phe() : core::pose::motif
• get_frame_pro() : core::pose::motif
• get_frame_ser() : core::pose::motif
• get_frame_thr() : core::pose::motif
• get_frame_trp() : core::pose::motif
• get_frame_tyr() : core::pose::motif
• get_frame_val() : core::pose::motif
• get_frame_vee() : core::pose::motif
• get_full_edge_from_num() : core::chemical::rna
• get_full_intracomponent_and_neighbor_resis() : core::pose::symmetry
• get_full_intracomponent_and_neighbor_subpose() : core::pose::symmetry
• get_full_intracomponent_and_neighbor_subs() : core::pose::symmetry
• get_full_intracomponent_neighbor_resis() : core::pose::symmetry
• get_full_intracomponent_neighbor_subpose() : core::pose::symmetry
• get_full_intracomponent_neighbor_subs() : core::pose::symmetry
• get_full_intracomponent_resis() : core::pose::symmetry
• get_full_intracomponent_subpose() : core::pose::symmetry
• get_full_intracomponent_subs() : core::pose::symmetry
• get_full_LW_orientation_from_num() : core::chemical::rna
• get_full_orientation_from_num() : core::chemical::rna
• get_full_side_from_num() : core::chemical::rna
• get_full_strands() : protocols::features::strand_assembly
• get_full_strands_from_sheet() : protocols::features::strand_assembly
• get_full_torsions() : core::chemical::rna
• get_gaussian_deriv() : core::scoring::magnesium
• get_gaussian_potential_score() : core::scoring::magnesium
• get_gaussian_score() : core::scoring::magnesium
• get_gdtmm() : protocols::hybridization
• get_glycan_connecting_protein_branch_point() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_glycan_position_from_resnum() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_glycan_start_points() : core::conformation::carbohydrates
• get_glycan_tree_size() : core::conformation::carbohydrates
• get_glycosidic_bond_residues() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_glycosidic_torsion() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_glycosidic_TorsionIDs() : core::conformation::carbohydrates
• get_graft_design_options() : protocols::antibody::design
• get_groove_widths() : core::scoring::dna
• get_hash_excluding_chain() : core::pose
• get_hash_from_chain() : core::pose
• get_hb_acc_chem_type() : core::scoring::hbonds
• get_hb_don_chem_type() : core::scoring::hbonds
• get_hbe_acc_hybrid() : core::scoring::hbonds
• get_hbond_atom_pairs() : protocols::hbnet
• get_hbond_energies() : core::scoring::hbonds
• get_hbond_score_weighted() : protocols::ligand_docking::ga_ligand_dock
• get_hbond_weight_type() : core::scoring::hbonds
• get_highest_score_from_job_data_statement() : protocols::features
• get_highest_score_from_score_data_statement() : protocols::features
• get_hoh_xyz() : protocols::magnesium
• get_hydration_stats() : protocols::magnesium
• get_idx() : core::scoring::rna::data
• get_iname1_from_name1() : core::scoring::dna
• get_incomplete_connections() : protocols::ligand_docking
• get_index_of_last_element_with_token() : protocols::jd3::dag_node_managers
• get_inf_base_pairs() : core::pose::rna
• get_input_domain_from_full_model_info_const() : core::pose::full_model_info
• get_input_res() : protocols::stepwise::legacy::modeler::rna
• get_interface_deltas() : protocols::ligand_docking
• get_intra_contacts() : protocols::matdes
• get_intracomponent_and_interneighbor_resis() : core::pose::symmetry
• get_intracomponent_and_interneighbor_subpose() : core::pose::symmetry
• get_intracomponent_and_interneighbor_subs() : core::pose::symmetry
• get_intracomponent_and_intraneighbor_resis() : core::pose::symmetry
• get_intracomponent_and_intraneighbor_subpose() : core::pose::symmetry
• get_intracomponent_and_intraneighbor_subs() : core::pose::symmetry
• get_intracomponent_and_neighbor_resis() : core::pose::symmetry
• get_intracomponent_and_neighbor_subpose() : core::pose::symmetry
• get_intracomponent_and_neighbor_subs() : core::pose::symmetry
• get_intracomponent_resis() : core::pose::symmetry
• get_intracomponent_subpose() : core::pose::symmetry
• get_intracomponent_subs() : core::pose::symmetry
• get_joint_id() : core::scoring::methods::dfire
• get_jump_id_from_chain() : core::pose
• get_jump_id_from_chain_id() : core::pose
• get_jump_ids_from_chain() : core::pose
• get_jump_ids_from_chain_ids() : core::pose
• get_jump_name_to_components() : core::pose::symmetry
• get_jump_name_to_subunits() : core::pose::symmetry
• get_jump_partners_from_pose() : protocols::stepwise::modeler
• get_jump_selector() : core::select::jump_selector
• get_K_cluster_engine() : protocols::toolbox
• get_km() : core::scoring::electron_density , core::scoring::fiber_diffraction
• get_L_equivalent() : core::chemical
• get_label() : protocols::ss_prediction
• get_largest_glycan_tree_size() : core::conformation::carbohydrates
• get_last_protein_residue() : protocols::toolbox::match_enzdes_util
• get_leap_6dof() : protocols::sic_dock
• get_leap_lower_stub() : protocols::sic_dock
• get_leap_upper_stub() : protocols::sic_dock
• get_legrand_2way_orientation() : core::scoring::sasa
• get_legrand_atomic_overlap() : core::scoring::sasa
• get_legrand_orientation() : core::scoring::sasa
• get_legrand_sasa_angles() : core::scoring::sasa
• get_legrand_sasa_masks() : core::scoring::sasa
• get_leontis_westhof_table() : core::pose::rna
• get_ligand_grid_scores() : protocols::ligand_docking
• get_ligand_RMSDs() : protocols::ligand_docking
• get_ligand_seqpos() : protocols::ligand_docking
• get_ligand_torsion_constraints() : protocols::ligand_docking
• get_ligand_travel() : protocols::ligand_docking
• get_ligand_travel_ensemble_best() : protocols::ligand_docking
• get_LigandMotifLibrary_user() : protocols::motifs
• get_line3() : core::scoring::electron_density::SplineInterp
• get_line4() : core::scoring::electron_density::SplineInterp
• get_linkage_position_of_saccharide_residue() : core::conformation::carbohydrates
• get_linkage_types_for_dihedral() : core::scoring::carbohydrates
• get_list_of_residues_in_sheet_i() : protocols::features::strand_assembly
• get_loop_atom() : core::scoring::loop_graph
• get_loop_close_potential() : core::scoring::loop_graph
• get_loop_info() : protocols::mpi_refinement
• get_loop_info_full() : protocols::mpi_refinement
• get_LoopCentral_ScoreFxn() : protocols::antibody
• get_LoopHighRes_ScoreFxn() : protocols::antibody
• get_lower_cutpoint_partner_for_upper() : core::scoring::methods
• get_LW_orientation() : core::pose::rna
• get_LW_orientation_from_char() : core::chemical::rna
• get_LW_orientation_from_num() : core::chemical::rna
• get_mainchain_children() : core::pose::carbohydrates
• get_masks() : core::scoring
• get_master_subunit_selection() : core::select
• get_matching_landmark() : protocols::antibody
• get_matching_subunits() : protocols::matdes
• get_max_centroid_to_atom_distance() : protocols::stepwise::modeler::rna::rigid_body
• get_max_sheet_id() : protocols::features::strand_assembly
• get_maximum_scores() : core::sequence
• get_mean_median_and_sdev() : core::scoring::dna
• get_membrane_depth_dependent_weight() : core::scoring::hbonds
• get_metric_from_datamap_and_subtags() : core::simple_metrics
• get_metric_names() : core::chemical::rdkit
• get_metrics_from_datamap_and_subtags() : core::simple_metrics
• get_mg_ligands() : protocols::magnesium
• get_mg_res() : protocols::magnesium
• get_mg_rsd() : protocols::magnesium
• get_mg_scorefxn() : protocols::magnesium
• get_mg_water_pairs() : protocols::magnesium
• get_min_and_max_contigs() : protocols::frags
• get_min_nstruct_index_checkpoint_file() : protocols::jd2
• get_mindis_with_plane_hashes() : protocols::sic_dock
• get_minimize_scorefxn() : protocols::stepwise::modeler
• get_minval_binwidth() : core::scoring , core::scoring::loop_graph::evaluator
• get_modeler_scorefxn() : protocols::stepwise::modeler::rna
• get_motif_atom_mask() : core::scoring::motif
• get_motif_build_position_defs_user() : protocols::motifs
• get_motif_build_positions_user() : protocols::motifs
• get_motif_length() : core::sequence
• get_MotifLibrary_user() : protocols::motifs
• get_move_elements_from_full_model_info() : core::pose::full_model_info
• get_move_elements_from_full_model_info_const() : core::pose::full_model_info
• get_move_type_string() : protocols::stepwise::monte_carlo
• get_movemap_factory() : core::select::movemap
• get_mover_name() : protocols::environment
• get_moving_res() : protocols::rna::denovo
• get_moving_res_from_full_model_info() : core::pose::full_model_info
• get_moving_res_from_full_model_info_const() : core::pose::full_model_info
• get_moving_res_including_domain_boundaries() : protocols::stepwise::modeler
• get_multi_residue_ligand_RMSDs() : protocols::ligand_docking
• get_n_glycosidic_torsions_in_res() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_n_neighbors() : core::scoring::sc
• get_name() : core::chemical::rdkit
• get_native_pose() : protocols::constraint_generator
• get_native_sequence() : protocols::antibody::design
• get_nbrs() : core::scoring::motif
• get_ncac() : protocols::jumping
• get_nearest_neighbor() : core::conformation
• get_neighbor_residues() : core::select
• get_neighbor_resis() : core::pose::symmetry
• get_neighbor_subpose() : core::pose::symmetry
• get_neighbor_subs() : core::pose::symmetry
• get_next_starting_res_for_connecting_strands() : protocols::features::strand_assembly
• get_non_NU_TorsionID_from_AtomIDs() : core::conformation::carbohydrates
• get_nres_asu() : protocols::cryst
• get_nres_asymmetric_unit() : core::pose::symmetry
• get_nterminal_peptide_bond_reference_frame() : core::pose::motif
• get_nterminal_peptide_bond_reference_frame_atomids() : core::pose::motif
• get_nth_lowest_score_from_job_data_statement() : protocols::features
• get_nth_lowest_score_from_score_data_statement() : protocols::features
• get_num_bytes() : core::scoring
• get_num_edges_for_res() : protocols::hbnet
• get_num_of_distinct_sheet_id() : protocols::features::strand_assembly
• get_num_of_sheets_that_surround_this_sheet() : protocols::features::strand_assembly
• get_num_protein_sc_sc_hbonds() : protocols::hbnet
• get_num_residues_nonvirt() : protocols::hybridization
• get_num_residues_prot() : protocols::hybridization
• get_num_strands_in_this_sheet() : protocols::features::strand_assembly
• get_number_base_pairs() : core::pose::rna
• get_number_base_stacks() : core::pose::rna
• get_number_dihedrals() : protocols::ncbb
• get_number_missing_residues_and_connections() : core::pose::full_model_info
• get_number_native_base_pairs() : core::pose::rna
• get_octahedral_uniform_rotation_sampler() : protocols::magnesium
• get_omega_preference_for_residue_in_pose() : core::scoring::carbohydrates
• get_op2_op1_sign() : core::pose::rna
• get_orientation() : core::scoring , core::scoring::packstat::old
• get_orientation_from_char() : core::chemical::rna
• get_orientation_from_num() : core::chemical::rna
• get_orientation_template_from_db() : protocols::tcr
• get_original_pose_rsd() : protocols::generalized_kinematic_closure
• get_other_poses() : core::import_pose
• get_other_residues() : protocols::stepwise::modeler
• get_out_tag() : protocols::vip
• get_outfile_name_with_tag() : core::io::silent
• get_output_tag() : protocols::jobdist
• get_overlap() : core::scoring , core::scoring::packstat::old
• get_overlap_pos() : protocols::loops::loop_closure::ccd
• get_Pack_ScoreFxn() : protocols::antibody
• get_packer() : protocols::stepwise::modeler::packer
• get_pairing_geometry() : core::scoring::dssp , protocols::jumping
• get_parameter_hash() : core::scoring
• get_partition_definition() : protocols::stepwise::modeler
• get_partition_definition_by_chemical_edge() : protocols::stepwise::modeler
• get_partition_definition_by_jump() : protocols::stepwise::modeler
• get_partition_definition_floating_base() : protocols::stepwise::modeler::rna
• get_patch_names() : core::chemical
• get_pdb2pose_numbering_as_stdmap() : core::pose
• get_pdb_and_cleanup() : core::import_pose
• get_pdb_code_from_pose_tag() : protocols::enzdes::enzutil
• get_pdb_numbering_from_single_string() : protocols::antibody::design
• get_pdb_numbering_from_strings() : protocols::antibody::design
• get_pdb_with_full_model_info() : core::import_pose
• get_peptide_bond_reference_frame() : core::pose::motif
• get_peptide_bond_reference_frame_atomids() : core::pose::motif
• get_per_residue_score() : protocols::nonlocal
• get_per_residue_scores() : protocols::relax
• get_phosphate_atom_and_neighbor_list() : core::pose::rna
• get_phosphate_scorefxn() : protocols::stepwise::modeler::rna::phosphate
• get_pivot_residues_from_movemap() : protocols::backrub
• get_pleating() : core::scoring::dssp , protocols::jumping
• get_pose_cis_trans_conformation() : protocols::antibody::clusters
• get_pose_sequences() : protocols::pdbinfo_manipulations
• get_position_in_vector() : core::scoring::carbon_hbonds , core::scoring::rna
• get_possible_O3prime_C5prime_distance_range() : protocols::stepwise::modeler::rna
• get_possible_reference_res_list_from_pose_without_fold_tree() : protocols::stepwise::modeler::rna::sugar
• get_preferred_jump_pair_for_docking_domains() : core::pose::full_model_info
• get_pretend_phi_explicit() : protocols::stepwise::legacy::modeler::protein
• get_pretend_psi_explicit() : protocols::stepwise::legacy::modeler::protein
• get_prob() : protocols::ss_prediction
• get_protocol_and_batch_id() : protocols::features
• get_pymol_observer() : protocols::moves
• get_pymol_selection_for_atoms() : core::select
• get_qt_mapping_general() : protocols::comparative_modeling
• get_question_mark_string() : protocols::features
• get_radius_of_gyration() : protocols::ligand_docking
• get_rb_atr_and_rep_scores() : protocols::ligand_docking
• get_rb_number() : core::id
• get_rb_type() : core::id
• get_ready_for_sew_packing() : protocols::hydrate
• get_recces_turner_sampler() : protocols::recces::sampler
• get_recces_turner_sampler_from_secstruct() : protocols::recces::sampler
• get_recces_turner_sampler_legacy() : protocols::recces::sampler
• get_reference_atoms() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_reference_atoms_for_1st_omega() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_reference_atoms_for_2nd_omega() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_reference_atoms_for_phi() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_reference_atoms_for_psi() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_reference_res_for_each_virtual_sugar() : protocols::stepwise::modeler::rna::sugar
• get_reference_res_for_each_virtual_sugar_based_on_fold_tree() : protocols::stepwise::modeler::rna::sugar
• get_reference_res_for_each_virtual_sugar_without_fold_tree() : protocols::stepwise::modeler::rna::sugar
• get_reference_res_for_virtual_sugar_based_on_fold_tree() : protocols::stepwise::modeler::rna::sugar
• get_remark_line() : protocols::denovo_design
• get_res_aa_from_BASE_name() : core::scoring::rna::chemical_shift
• get_res_list_const() : core::pose::full_model_info
• get_res_list_from_full_model_info() : core::pose::full_model_info
• get_res_list_from_full_model_info_const() : core::pose::full_model_info
• get_res_map() : protocols::stepwise::modeler , protocols::stepwise::modeler::rna::sugar
• get_res_num_from_pdb_info() : core::pose::full_model_info
• get_res_with_name() : protocols::magnesium
• get_resfile_commands() : core::pack::task
• get_resid() : protocols::denovo_design
• get_residue() : core::pose::full_model_info
• get_residue_base_state() : core::chemical::rna , core::pose::rna
• get_residue_connections() : core::conformation
• get_residue_current_energy() : core::pack
• get_residue_from_name() : core::conformation
• get_residue_from_name1() : core::conformation
• get_residue_from_seq_num() : protocols::stepwise::modeler::rna
• get_residue_mapping_from_selectors() : core::select::residue_selector
• get_residue_pair_rt6() : core::scoring::motif
• get_residue_pair_xform() : core::scoring::motif
• get_residue_path_distances() : core::chemical
• get_residue_pucker_state() : core::chemical::rna , core::pose::rna
• get_residue_selector() : core::select::residue_selector , protocols::denovo_design
• get_residue_selector_from_subset() : core::select
• get_residue_set_from_subset() : core::select
• get_residue_weight_by_ss() : core::scoring::methods
• get_residues_from_chains() : core::pose
• get_residues_from_movemap_bb_any_torsion() : core::kinematics
• get_residues_from_movemap_bb_or_chi() : core::kinematics
• get_residues_from_movemap_with_id() : core::kinematics
• get_residues_from_subset() : core::select
• get_residues_within_dist_of_RNA() : protocols::rna::denovo
• get_resis() : core::pose::symmetry
• get_resnum_from_cstid() : protocols::enzdes::enzutil
• get_resnum_from_cstid_list() : protocols::enzdes::enzutil
• get_resnum_from_glycan_position() : core::conformation::carbohydrates , core::pose::carbohydrates
• get_resnum_from_pdb_numbering() : protocols::antibody::design
• get_resnum_from_single_string() : protocols::antibody::design
• get_resnum_from_single_string_w_landmark() : protocols::antibody::design
• get_resnum_from_strings() : protocols::antibody::design
• get_resnum_list() : core::pose
• get_resnum_list_ordered() : core::pose
• get_resnum_selector() : core::pose
• get_resnum_string() : core::pose
• get_resnum_to_subunit_component() : core::pose::symmetry
• get_resnumber_from_reference_pose() : core::pose
• get_resnums_for_chain() : core::pose
• get_resnums_for_chain_id() : core::pose
• get_resnums_from_glycan_positions() : core::pose::carbohydrates
• get_resnums_from_strings_with_ranges() : protocols::antibody::design
• get_resnums_in_leaf() : core::pose::carbohydrates
• get_resnums_in_leaf_on_the_fly() : core::pose::carbohydrates
• get_restag() : core::energy_methods
• get_restype_for_pose() : core::pose
• get_rg() : protocols::sic_dock
• get_rho_and_z() : core::scoring::rna::chemical_shift
• get_rigid_body_jumps() : core::pose::rna
• get_ring_current_deriv() : core::scoring::rna::chemical_shift
• get_ring_current_term_derivatives() : core::scoring::rna::chemical_shift
• get_rms() : protocols::electron_density
• get_RMSD() : protocols::forge::remodel
• get_rmsd() : protocols::loophash , protocols::stepwise::modeler::align
• get_rmsd_type_name_map() : core::scoring
• get_rmsd_type_names() : core::scoring
• get_rna_base_centroid() : core::chemical::rna
• get_rna_base_coordinate_system() : core::chemical::rna
• get_rna_base_coordinate_system_from_CS_params() : core::scoring::rna::chemical_shift
• get_rna_base_coordinate_system_stub() : core::chemical::rna
• get_rna_data_info() : core::io::rna
• get_rna_hires_scorefxn() : protocols::rna::denovo
• get_rna_motif_score() : core::scoring::rna
• get_rna_motifs() : core::scoring::rna
• get_rna_secstruct_legacy() : core::pose::rna::secstruct_legacy
• get_rna_secstruct_legacy_from_const_pose() : core::pose::rna::secstruct_legacy
• get_rnp_docking_fold_tree() : protocols::rna::denovo
• get_root_atomno() : core::conformation
• get_root_residue_root_atomno() : core::conformation
• get_rosetta_hatom_name() : core::scoring::rna::chemical_shift
• get_rot_angle() : protocols::electron_density
• get_rotamer_angle_diffs() : core::pack
• get_rsd_type_from_aa() : core::pose
• get_rt6() : protocols::sic_dock::scores
• get_rt_from_residue_pair() : core::conformation
• get_rt_over_leap() : protocols::loophash
• get_rt_over_leap_fast() : protocols::loophash
• get_rt_over_leap_without_foldtree_bs() : protocols::loophash
• get_sample_res_for_pose() : core::pose::full_model_info
• get_sasa() : core::scoring::motif
• get_sasa_dot_locations() : core::scoring::packstat
• get_sasa_from_cycles() : core::scoring::power_diagram
• get_sasa_method_from_string() : core::scoring::sasa
• get_sasa_radii_parameter_name() : core::scoring::sasa
• get_sasa_radii_set_from_string() : core::scoring::sasa
• get_sc_bb_sasa() : core::scoring::sasa
• get_sc_bb_sasa_per_res() : core::scoring::sasa
• get_score_for_struct_id_and_score_term_from_job_data() : protocols::features
• get_score_for_struct_id_and_score_term_from_score_data() : protocols::features
• get_score_function() : core::scoring , protocols::denovo_design::movers
• get_score_function_legacy() : core::scoring
• get_score_function_name() : core::scoring
• get_score_functionName() : core::scoring
• get_score_line_string() : core::pose
• get_score_map() : protocols::jobdist
• get_score_normalization_function() : protocols::qsar::scoring_grid
• get_score_type_id_from_score_term() : protocols::features
• get_scored_base_stack_list() : core::pose::rna
• get_scoretypes() : protocols::recces
• get_second_atom_from_connection() : core::conformation
• get_secstruct() : protocols::membrane
• get_secstruct_from_abego() : protocols::denovo_design::components
• get_section_name() : core::scoring::constraints
• get_segids_from_pdb_info() : core::pose::full_model_info
• get_segment_id() : protocols::features::strand_assembly
• get_seq() : core::energy_methods
• get_seq_design_options() : protocols::antibody::design
• get_seq_sep() : core::scoring::hbonds
• get_sequence_information() : core::import_pose
• get_sequence_len() : core::pose
• get_sequence_object() : core::sequence
• get_sha1_hash_excluding_chain() : core::pose
• get_sha1_hash_excluding_chains() : core::pose
• get_sha1_hash_from_chain() : core::pose
• get_sha1_hash_from_chains() : core::pose
• get_sheet_antiparallel_info() : protocols::features::strand_assembly
• get_shortest_among_4_vals() : protocols::features::strand_assembly
• get_side_from_num() : core::chemical::rna
• get_sidechain_reference_frame() : core::pose::motif
• get_sidechain_reference_frame_atomids() : core::pose::motif
• get_sidechain_reference_frame_atomids_with_downstream() : core::pose::motif
• get_silent_file_tags() : protocols::stepwise::legacy::modeler::rna
• get_size_sandwich_PK_id() : protocols::features::strand_assembly
• get_sm_data() : core::simple_metrics
• get_something_from_database() : protocols::features
• get_spanning_jobs() : protocols::jd2
• get_specific_atom_coordinate() : protocols::toolbox::rigid_body
• get_ssdep_weight() : core::scoring::hbonds
• get_start_end_res_num_in_the_longest_strand() : protocols::features::strand_assembly
• get_starting_res_for_connecting_strands() : protocols::features::strand_assembly
• get_strand_residues() : protocols::denovo_design::components
• get_strand_sew_models_from_db() : protocols::legacy_sewing
• get_string_comparison_type_map() : protocols::simple_filters
• get_string_comparison_type_strings() : protocols::simple_filters
• get_string_real_pairs_from_current_job() : protocols::jd2
• get_string_string_pairs_from_current_job() : protocols::jd2
• get_strings_from_current_job() : protocols::jd2
• get_struct_id_with_highest_score_from_job_data() : protocols::features
• get_struct_id_with_highest_score_from_score_data() : protocols::features
• get_struct_id_with_lowest_score_from_job_data() : protocols::features
• get_struct_id_with_lowest_score_from_score_data() : protocols::features
• get_struct_id_with_nth_lowest_score_from_job_data() : protocols::features
• get_struct_id_with_nth_lowest_score_from_score_data() : protocols::features
• get_structure_count_statement() : protocols::features
• get_stub_from_residue() : core::conformation
• get_stub_stub() : core::pose::rna
• get_stub_stub_params() : core::scoring::dna
• get_subpose() : core::pose::symmetry
• get_subset_from_residues() : core::select
• get_subunit_name_to_component() : core::pose::symmetry
• get_sugar_centroid() : core::pose::rna
• get_sugar_pucker() : core::scoring::dna
• get_sugar_pucker_distr() : core::scoring::dna
• get_sugar_torsions() : core::scoring::dna
• get_suite_torsion_ids() : core::pose::rna
• get_suite_torsion_info() : core::pose::rna
• get_summary_type_strings() : core::simple_metrics::metrics
• get_superposition_transformation() : protocols::hybridization
• get_surf_tot() : core::scoring::packing
• get_surf_vol() : core::scoring::packing
• get_surf_vol_deriv() : core::scoring::packing
• get_surrounding_O2prime_hydrogen() : protocols::stepwise::modeler::rna
• get_sym_aware_jump_num() : core::pose::symmetry
• get_symdof_subunits() : core::pose::symmetry
• get_symm_axis() : core::pose::symmetry
• get_symm_ind_res() : core::pack::hbonds
• get_symmops_Aba2() : protocols::cryst
• get_symmops_Abm2() : protocols::cryst
• get_symmops_Ama2() : protocols::cryst
• get_symmops_Amm2() : protocols::cryst
• get_symmops_B11m() : protocols::cryst
• get_symmops_C121() : protocols::cryst
• get_symmops_C12slashc1() : protocols::cryst
• get_symmops_C12slashm1() : protocols::cryst
• get_symmops_C1c1() : protocols::cryst
• get_symmops_C1m1() : protocols::cryst
• get_symmops_C222() : protocols::cryst
• get_symmops_C2221() : protocols::cryst
• get_symmops_Ccc2() : protocols::cryst
• get_symmops_Ccca__2() : protocols::cryst
• get_symmops_Cccm() : protocols::cryst
• get_symmops_Cmc21() : protocols::cryst
• get_symmops_Cmca() : protocols::cryst
• get_symmops_Cmcm() : protocols::cryst
• get_symmops_Cmm2() : protocols::cryst
• get_symmops_Cmma() : protocols::cryst
• get_symmops_Cmmm() : protocols::cryst
• get_symmops_F222() : protocols::cryst
• get_symmops_F23() : protocols::cryst
• get_symmops_F4132() : protocols::cryst
• get_symmops_F432() : protocols::cryst
• get_symmops_Fdd2() : protocols::cryst
• get_symmops_Fddd__2() : protocols::cryst
• get_symmops_Fdminus3__2() : protocols::cryst
• get_symmops_Fdminus3c__2() : protocols::cryst
• get_symmops_Fdminus3m__2() : protocols::cryst
• get_symmops_Fminus43c() : protocols::cryst
• get_symmops_Fminus43m() : protocols::cryst
• get_symmops_Fmm2() : protocols::cryst
• get_symmops_Fmminus3() : protocols::cryst
• get_symmops_Fmminus3c() : protocols::cryst
• get_symmops_Fmminus3m() : protocols::cryst
• get_symmops_Fmmm() : protocols::cryst
• get_symmops_I212121() : protocols::cryst
• get_symmops_I213() : protocols::cryst
• get_symmops_I222() : protocols::cryst
• get_symmops_I23() : protocols::cryst
• get_symmops_I4() : protocols::cryst
• get_symmops_I41() : protocols::cryst
• get_symmops_I4122() : protocols::cryst
• get_symmops_I4132() : protocols::cryst
• get_symmops_I41cd() : protocols::cryst
• get_symmops_I41md() : protocols::cryst
• get_symmops_I41slasha__2() : protocols::cryst
• get_symmops_I41slashacd__2() : protocols::cryst
• get_symmops_I41slashamd__2() : protocols::cryst
• get_symmops_I422() : protocols::cryst
• get_symmops_I432() : protocols::cryst
• get_symmops_I4cm() : protocols::cryst
• get_symmops_I4mm() : protocols::cryst
• get_symmops_I4slashm() : protocols::cryst
• get_symmops_I4slashmcm() : protocols::cryst
• get_symmops_I4slashmmm() : protocols::cryst
• get_symmops_Iaminus3() : protocols::cryst
• get_symmops_Iaminus3d() : protocols::cryst
• get_symmops_Iba2() : protocols::cryst
• get_symmops_Ibam() : protocols::cryst
• get_symmops_Ibca() : protocols::cryst
• get_symmops_Ima2() : protocols::cryst
• get_symmops_Iminus4() : protocols::cryst
• get_symmops_Iminus42d() : protocols::cryst
• get_symmops_Iminus42m() : protocols::cryst
• get_symmops_Iminus43d() : protocols::cryst
• get_symmops_Iminus43m() : protocols::cryst
• get_symmops_Iminus4c2() : protocols::cryst
• get_symmops_Iminus4m2() : protocols::cryst
• get_symmops_Imm2() : protocols::cryst
• get_symmops_Imma() : protocols::cryst
• get_symmops_Imminus3() : protocols::cryst
• get_symmops_Imminus3m() : protocols::cryst
• get_symmops_Immm() : protocols::cryst
• get_symmops_P1() : protocols::cryst
• get_symmops_P121() : protocols::cryst
• get_symmops_P1211() : protocols::cryst
• get_symmops_P121slashc1() : protocols::cryst
• get_symmops_P121slashm1() : protocols::cryst
• get_symmops_P121slashn1() : protocols::cryst
• get_symmops_P12slashc1() : protocols::cryst
• get_symmops_P12slashm1() : protocols::cryst
• get_symmops_P1c1() : protocols::cryst
• get_symmops_P1m1() : protocols::cryst
• get_symmops_P21212() : protocols::cryst
• get_symmops_P212121() : protocols::cryst
• get_symmops_P213() : protocols::cryst
• get_symmops_P222() : protocols::cryst
• get_symmops_P2221() : protocols::cryst
• get_symmops_P23() : protocols::cryst
• get_symmops_P3() : protocols::cryst
• get_symmops_P31() : protocols::cryst
• get_symmops_P3112() : protocols::cryst
• get_symmops_P312() : protocols::cryst
• get_symmops_P3121() : protocols::cryst
• get_symmops_P31c() : protocols::cryst
• get_symmops_P31m() : protocols::cryst
• get_symmops_P32() : protocols::cryst
• get_symmops_P321() : protocols::cryst
• get_symmops_P3212() : protocols::cryst
• get_symmops_P3221() : protocols::cryst
• get_symmops_P3c1() : protocols::cryst
• get_symmops_P3m1() : protocols::cryst
• get_symmops_P4() : protocols::cryst
• get_symmops_P41() : protocols::cryst
• get_symmops_P41212() : protocols::cryst
• get_symmops_P4122() : protocols::cryst
• get_symmops_P4132() : protocols::cryst
• get_symmops_P42() : protocols::cryst
• get_symmops_P4212() : protocols::cryst
• get_symmops_P422() : protocols::cryst
• get_symmops_P42212() : protocols::cryst
• get_symmops_P4222() : protocols::cryst
• get_symmops_P4232() : protocols::cryst
• get_symmops_P42bc() : protocols::cryst
• get_symmops_P42cm() : protocols::cryst
• get_symmops_P42mc() : protocols::cryst
• get_symmops_P42nm() : protocols::cryst
• get_symmops_P42slashm() : protocols::cryst
• get_symmops_P42slashmbc() : protocols::cryst
• get_symmops_P42slashmcm() : protocols::cryst
• get_symmops_P42slashmmc() : protocols::cryst
• get_symmops_P42slashmnm() : protocols::cryst
• get_symmops_P42slashn__2() : protocols::cryst
• get_symmops_P42slashnbc__2() : protocols::cryst
• get_symmops_P42slashncm__2() : protocols::cryst
• get_symmops_P42slashnmc__2() : protocols::cryst
• get_symmops_P42slashnnm__2() : protocols::cryst
• get_symmops_P43() : protocols::cryst
• get_symmops_P432() : protocols::cryst
• get_symmops_P43212() : protocols::cryst
• get_symmops_P4322() : protocols::cryst
• get_symmops_P4332() : protocols::cryst
• get_symmops_P4bm() : protocols::cryst
• get_symmops_P4cc() : protocols::cryst
• get_symmops_P4mm() : protocols::cryst
• get_symmops_P4nc() : protocols::cryst
• get_symmops_P4slashm() : protocols::cryst
• get_symmops_P4slashmbm() : protocols::cryst
• get_symmops_P4slashmcc() : protocols::cryst
• get_symmops_P4slashmmm() : protocols::cryst
• get_symmops_P4slashmnc() : protocols::cryst
• get_symmops_P4slashn__2() : protocols::cryst
• get_symmops_P4slashnbm__2() : protocols::cryst
• get_symmops_P4slashncc__2() : protocols::cryst
• get_symmops_P4slashnmm__2() : protocols::cryst
• get_symmops_P4slashnnc__2() : protocols::cryst
• get_symmops_P6() : protocols::cryst
• get_symmops_P61() : protocols::cryst
• get_symmops_P6122() : protocols::cryst
• get_symmops_P62() : protocols::cryst
• get_symmops_P622() : protocols::cryst
• get_symmops_P6222() : protocols::cryst
• get_symmops_P63() : protocols::cryst
• get_symmops_P6322() : protocols::cryst
• get_symmops_P63cm() : protocols::cryst
• get_symmops_P63mc() : protocols::cryst
• get_symmops_P63slashm() : protocols::cryst
• get_symmops_P63slashmcm() : protocols::cryst
• get_symmops_P63slashmmc() : protocols::cryst
• get_symmops_P64() : protocols::cryst
• get_symmops_P6422() : protocols::cryst
• get_symmops_P65() : protocols::cryst
• get_symmops_P6522() : protocols::cryst
• get_symmops_P6cc() : protocols::cryst
• get_symmops_P6mm() : protocols::cryst
• get_symmops_P6slashm() : protocols::cryst
• get_symmops_P6slashmcc() : protocols::cryst
• get_symmops_P6slashmmm() : protocols::cryst
• get_symmops_Paminus3() : protocols::cryst
• get_symmops_Pba2() : protocols::cryst
• get_symmops_Pbam() : protocols::cryst
• get_symmops_Pban__2() : protocols::cryst
• get_symmops_Pbca() : protocols::cryst
• get_symmops_Pbcm() : protocols::cryst
• get_symmops_Pbcn() : protocols::cryst
• get_symmops_Pca21() : protocols::cryst
• get_symmops_Pcc2() : protocols::cryst
• get_symmops_Pcca() : protocols::cryst
• get_symmops_Pccm() : protocols::cryst
• get_symmops_Pccn() : protocols::cryst
• get_symmops_Pma2() : protocols::cryst
• get_symmops_Pmc21() : protocols::cryst
• get_symmops_Pminus1() : protocols::cryst
• get_symmops_Pminus3() : protocols::cryst
• get_symmops_Pminus31c() : protocols::cryst
• get_symmops_Pminus31m() : protocols::cryst
• get_symmops_Pminus3c1() : protocols::cryst
• get_symmops_Pminus3m1() : protocols::cryst
• get_symmops_Pminus4() : protocols::cryst
• get_symmops_Pminus421c() : protocols::cryst
• get_symmops_Pminus421m() : protocols::cryst
• get_symmops_Pminus42c() : protocols::cryst
• get_symmops_Pminus42m() : protocols::cryst
• get_symmops_Pminus43m() : protocols::cryst
• get_symmops_Pminus43n() : protocols::cryst
• get_symmops_Pminus4b2() : protocols::cryst
• get_symmops_Pminus4c2() : protocols::cryst
• get_symmops_Pminus4m2() : protocols::cryst
• get_symmops_Pminus4n2() : protocols::cryst
• get_symmops_Pminus6() : protocols::cryst
• get_symmops_Pminus62c() : protocols::cryst
• get_symmops_Pminus62m() : protocols::cryst
• get_symmops_Pminus6c2() : protocols::cryst
• get_symmops_Pminus6m2() : protocols::cryst
• get_symmops_Pmm2() : protocols::cryst
• get_symmops_Pmma() : protocols::cryst
• get_symmops_Pmminus3() : protocols::cryst
• get_symmops_Pmminus3m() : protocols::cryst
• get_symmops_Pmminus3n() : protocols::cryst
• get_symmops_Pmmm() : protocols::cryst
• get_symmops_Pmmn__2() : protocols::cryst
• get_symmops_Pmn21() : protocols::cryst
• get_symmops_Pmna() : protocols::cryst
• get_symmops_Pna21() : protocols::cryst
• get_symmops_Pnc2() : protocols::cryst
• get_symmops_Pnma() : protocols::cryst
• get_symmops_Pnminus3__2() : protocols::cryst
• get_symmops_Pnminus3m__2() : protocols::cryst
• get_symmops_Pnminus3n__2() : protocols::cryst
• get_symmops_Pnn2() : protocols::cryst
• get_symmops_Pnna() : protocols::cryst
• get_symmops_Pnnm() : protocols::cryst
• get_symmops_Pnnn__2() : protocols::cryst
• get_symmops_R32__H() : protocols::cryst
• get_symmops_R3__H() : protocols::cryst
• get_symmops_R3c__H() : protocols::cryst
• get_symmops_R3m__H() : protocols::cryst
• get_symmops_Rminus3__H() : protocols::cryst
• get_symmops_Rminus3c__H() : protocols::cryst
• get_symmops_Rminus3m__H() : protocols::cryst
• get_tag() : core::io::rna , protocols::features::strand_assembly
• get_tag_and_silent_file_for_struct() : protocols::stepwise::legacy::modeler::rna
• get_tag_from_pdb_filename() : protocols::stepwise::legacy::modeler::rna
• get_tags() : core::io::rna
• get_target_position_map_make_dna_mutations() : protocols::motifs
• get_target_positions_make_dna_mutations() : protocols::motifs
• get_targetconformers_user() : protocols::motifs
• get_task_operations() : core::pack::task
• get_tenA_neighbor_residues() : core::select
• get_terminal_varianttypes() : core::chemical
• get_termini_from_pose() : protocols::sic_dock
• get_time() : protocols::wum
• get_token() : core::pack::task
• get_torsion_bin() : core::conformation
• get_torsions() : protocols::recces , protocols::recces::scratch
• get_total_energy_for_state() : core::pack
• get_total_rounds_for_overlap_one_layer_two() : protocols::carbohydrates
• get_touched_res() : protocols::mpi_refinement
• get_tree() : core::import_pose
• get_triple_bin() : core::scoring::dna
• get_ui_observer() : protocols::network
• get_unique_connection_res() : protocols::stepwise::modeler
• get_upper_cutpoint_partner_for_lower() : core::scoring::methods
• get_useful_HOH_coords() : protocols::magnesium
• get_useful_line() : core::scoring::mhc_epitope_energy
• get_vec_AA_kind() : protocols::features::strand_assembly
• get_vec_distinct_sheet_id() : protocols::features::strand_assembly
• get_vec_of_sw_can_by_sh_id() : protocols::features::strand_assembly
• get_vector_of_loop_AA_distribution() : protocols::features::strand_assembly
• get_vector_of_strand_AA_distribution() : protocols::features::strand_assembly
• get_water_res() : protocols::magnesium
• get_water_uniform_rotation_sampler() : protocols::magnesium
• get_watson_crick_base_pair_atoms() : core::chemical::rna
• get_WC_atom() : core::chemical::rna
• get_weights_for_one_partner_hbonder() : core::scoring::hbonds
• get_weights_for_two_partner_hbonder() : core::scoring::hbonds
• get_working_directory() : protocols::stepwise::legacy::modeler::rna
• get_write_delete_pair() : protocols::features
• get_writeable_cacheable_map() : protocols::denovo_design::components
• get_xform_stats() : protocols::sic_dock
• get_y_axis() : core::scoring::dna
• get_y_axis_atoms() : core::scoring::dna
• get_z_axis() : core::scoring::dna
• getAVG() : protocols::sparta
• getDensityMap() : core::scoring::electron_density
• getDensityMap_legacy() : core::scoring::electron_density
• getDiff() : protocols::sparta
• getFiberDiffractionData() : core::scoring::fiber_diffraction
• getFiberDiffractionData_legacy() : core::scoring::fiber_diffraction
• getMLweight() : core::util
• getMLweight_cart() : core::util
• getMW() : protocols::cryst
• getPhenixInterface() : core::scoring::cryst
• getPoseExtraFloatScores() : core::pose
• getPoseExtraScore() : core::pose
• getPoseExtraStringScores() : core::pose
• GetPossibleTypesForAtom() : core::chemical::gasteiger
• GetRBDOFValuesCOP : protocols::matdes
• GetRBDOFValuesOP : protocols::matdes
• getRG() : protocols::moves
• getRMS() : protocols::sparta
• getSTD() : protocols::sparta
• getVolume() : protocols::cryst
• getxform() : core::fragment , protocols::sic_dock
• GHOST_COLOR : protocols::viewer::graphics_states_param
• give_dihedral_index() : protocols::ncbb
• GLOBAL_BOGUS_ATOM_ID() : core::id
• GLOBAL_BOGUS_DOF_ID() : core::id
• GLOBAL_BOGUS_NAMED_ATOM_ID : core::id
• GLOBAL_BOGUS_PARTIAL_ATOM_ID : core::id
• GLOBAL_BOGUS_STUB_ID() : core::id
• GLOBAL_BOGUS_TORSION_ID : core::id
• GLOBAL_CHAINBREAK_BOGUS_ATOM_ID : core::id
• GLOBAL_CHAINBREAK_BOGUS_NAMED_ATOM_ID : core::id
• GLOBAL_CHAINBREAK_BOGUS_PARTIAL_ATOM_ID : core::id
• global_loop_rmsd() : protocols::antibody
• GlobalJobID : protocols::jd3
• GlobalResidueTypeSetCAP : core::chemical
• GlobalResidueTypeSetCOP : core::chemical
• GlobalResidueTypeSetOP : core::chemical
• GLYCAN_TREE_OBSERVER : core::pose::datacache
• GlycanInfoMoverCOP : protocols::analysis
• GlycanInfoMoverOP : protocols::analysis
• GlycanLayerSelectorCOP : core::select::residue_selector
• GlycanLayerSelectorOP : core::select::residue_selector
• GlycanNodeCOP : core::conformation::carbohydrates
• GlycanNodeOP : core::conformation::carbohydrates
• GlycanPositionSelectorCOP : core::select::residue_selector
• GlycanPositionSelectorOP : core::select::residue_selector
• GlycanResidueSelectorCOP : core::select::residue_selector
• GlycanResidueSelectorOP : core::select::residue_selector
• GlycanSamplerCOP : protocols::carbohydrates
• GlycanSamplerOP : protocols::carbohydrates
• GlycanSequon : protocols::carbohydrates
• GlycanSequonsSelectorCOP : core::select::residue_selector
• GlycanSequonsSelectorOP : core::select::residue_selector
• GlycanTreeCOP : core::conformation::carbohydrates
• GlycanTreeMinMoverCOP : protocols::carbohydrates
• GlycanTreeMinMoverOP : protocols::carbohydrates
• GlycanTreeModelerCOP : protocols::carbohydrates
• GlycanTreeModelerOP : protocols::carbohydrates
• GlycanTreeOP : core::conformation::carbohydrates
• GlycanTreeSetCOP : core::conformation::carbohydrates
• GlycanTreeSetObserverCOP : core::conformation::carbohydrates
• GlycanTreeSetObserverOP : core::conformation::carbohydrates
• GlycanTreeSetOP : core::conformation::carbohydrates
• GlycopeptideDockingFlagsCOP : protocols::glycopeptide_docking
• GlycopeptideDockingFlagsOP : protocols::glycopeptide_docking
• GlycopeptideDockingHighResRefinementCOP : protocols::glycopeptide_docking
• GlycopeptideDockingHighResRefinementOP : protocols::glycopeptide_docking
• GlycopeptideDockingLowResRefinementCOP : protocols::glycopeptide_docking
• GlycopeptideDockingLowResRefinementOP : protocols::glycopeptide_docking
• GlycopeptideDockingProtocolCOP : protocols::glycopeptide_docking
• GlycopeptideDockingProtocolOP : protocols::glycopeptide_docking
• GLYCOSIDE : core::chemical
• glycosylate_pose() : core::pose::carbohydrates
• glycosylate_pose_by_file() : core::pose::carbohydrates
• glycosylate_residues() : protocols::glycopeptide_docking
• GlycosyltransferaseMoverCOP : protocols::enzymatic_movers
• GlycosyltransferaseMoverOP : protocols::enzymatic_movers
• gnl_R_qfht() : core::energy_methods
• GNRA_TETRALOOP : core::scoring::rna
• goap : core::scoring
• goap_angle : core::scoring
• goap_dist : core::scoring
• GoapEnergyCreator_registrator : core::init
• GoapEnergyOP : core::energy_methods
• GoapRsdTypeCOP : core::energy_methods
• GoapRsdTypeMap : core::energy_methods
• GoapRsdTypeOP : core::energy_methods
• GrabAllCollectorCOP : protocols::frag_picker
• GrabAllCollectorOP : protocols::frag_picker
• grad3() : core::scoring::electron_density::SplineInterp
• grad4() : core::scoring::electron_density::SplineInterp
• graft_cdr() : protocols::tcr
• graft_cdr_to_fw() : protocols::tcr
• graft_closed() : protocols::grafting
• graft_framework() : protocols::tcr
• GraftCDRLoopsProtocolCOP : protocols::antibody
• GraftCDRLoopsProtocolOP : protocols::antibody
• GraftedStemOptimizerCOP : protocols::antibody
• GraftedStemOptimizerOP : protocols::antibody
• GraftMoverBaseCOP : protocols::grafting
• GraftMoverBaseOP : protocols::grafting
• GraftMoverCOP : protocols::antibody_legacy
• GraftMoverOP : protocols::antibody_legacy
• GraftOneCDRLoopCOP : protocols::antibody
• GraftOneCDRLoopOP : protocols::antibody
• GraftOneMoverCOP : protocols::antibody_legacy
• GraftOneMoverOP : protocols::antibody_legacy
• GraftSwitchMoverCOP : protocols::switches
• GraftSwitchMoverOP : protocols::switches
• graph_from_strandpairings() : protocols::denovo_design::components
• graphics_main() : protocols::medal , protocols::star
• GreedyKCenterCOP : protocols::toolbox
• GreedyKCenterOP : protocols::toolbox
• GreedyOptMutationMoverCOP : protocols::design_opt
• GreedyOptMutationMoverOP : protocols::design_opt
• GreekDistance : core::chemical
• GreenPackerCOP : protocols::minimization_packing
• GreenPackerOP : protocols::minimization_packing
• grid_rotamer_trials() : protocols::ligand_docking
• grid_rotamer_trials_atr_rep() : protocols::ligand_docking
• grid_score() : protocols::ligand_docking
• grid_score_atr_rep() : protocols::ligand_docking
• grid_to_kin() : protocols::ligand_docking
• grid_vdw : core::scoring
• GridBaseCOP : protocols::qsar::scoring_grid
• GridBaseOP : protocols::qsar::scoring_grid
• GridCreatorCOP : protocols::qsar::scoring_grid
• GridCreatorOP : protocols::qsar::scoring_grid
• GridFactoryCOP : protocols::qsar::scoring_grid
• GridFactoryOP : protocols::qsar::scoring_grid
• GridManagerCOP : protocols::qsar::scoring_grid
• GridManagerOP : protocols::qsar::scoring_grid
• GridScorerCOP : protocols::ligand_docking::ga_ligand_dock
• GridScorerOP : protocols::ligand_docking::ga_ligand_dock
• GridSearchIterator_Ts1COP : protocols::scoring::methods::pcsTs1
• GridSearchIterator_Ts1OP : protocols::scoring::methods::pcsTs1
• GridSearchIterator_Ts2COP : protocols::scoring::methods::pcsTs2
• GridSearchIterator_Ts2OP : protocols::scoring::methods::pcsTs2
• GridSearchIterator_Ts3COP : protocols::scoring::methods::pcsTs3
• GridSearchIterator_Ts3OP : protocols::scoring::methods::pcsTs3
• GridSearchIterator_Ts4COP : protocols::scoring::methods::pcsTs4
• GridSearchIterator_Ts4OP : protocols::scoring::methods::pcsTs4
• GridSearchIteratorCOP : protocols::scoring::methods::pcs
• GridSearchIteratorOP : protocols::scoring::methods::pcs
• GridSetCOP : protocols::qsar::scoring_grid
• GridSetOP : protocols::qsar::scoring_grid
• group_pair : protocols::pose_metric_calculators
• group_set : protocols::pose_metric_calculators
• GroupDiscriminatorCOP : protocols::minimization_packing
• GroupDiscriminatorOP : protocols::minimization_packing
• GroupList : protocols::noesy_assign
• grow() : protocols::ligand_docking
• grow_left_r() : protocols::forge::methods
• grow_left_rtype() : protocols::forge::methods
• grow_ligand_tracer() : protocols::ligand_docking
• grow_right_r() : protocols::forge::methods
• grow_right_rtype() : protocols::forge::methods
• GrowLeft : protocols::protein_interface_design::movers
• GrowLeftAP : protocols::forge::build
• GrowLeftCAP : protocols::forge::build
• GrowLeftCOP : protocols::forge::build
• GrowLeftOP : protocols::forge::build
• GrowLigandCOP : protocols::ligand_docking
• GrowLigandOP : protocols::ligand_docking
• GrowPeptidesSegmentOP : protocols::seeded_abinitio
• GrowRight : protocols::protein_interface_design::movers
• GrowRightAP : protocols::forge::build
• GrowRightCAP : protocols::forge::build
• GrowRightCOP : protocols::forge::build
• GrowRightOP : protocols::forge::build
• gt : protocols::simple_filters
• gt_or_eq : protocols::simple_filters
• GuardedLoopsFromFileCOP : protocols::loops
• GuardedLoopsFromFileOP : protocols::loops
• guess_rbsegs_from_pose() : protocols::rbsegment_relax
• guess_torsion_type_of_dof_id() : core::conformation::symmetry
• gzip() : core::io::silent