Here is a list of all namespace members with links to the namespace documentation for each member:
- h -
- H
: core::chemical::element
- h1
: protocols::antibody
- H1
: protocols::antibody
- H1_10_1
: protocols::antibody::clusters
- H1_12_1
: protocols::antibody::clusters
- H1_13_1
: protocols::antibody::clusters
- H1_13_10
: protocols::antibody::clusters
- H1_13_11
: protocols::antibody::clusters
- H1_13_2
: protocols::antibody::clusters
- H1_13_3
: protocols::antibody::clusters
- H1_13_4
: protocols::antibody::clusters
- H1_13_5
: protocols::antibody::clusters
- H1_13_6
: protocols::antibody::clusters
- H1_13_7
: protocols::antibody::clusters
- H1_13_8
: protocols::antibody::clusters
- H1_13_9
: protocols::antibody::clusters
- H1_13_cis9_1
: protocols::antibody::clusters
- H1_14_1
: protocols::antibody::clusters
- H1_15_1
: protocols::antibody::clusters
- H1_16_1
: protocols::antibody::clusters
- h2
: protocols::antibody
- H2
: protocols::antibody
- H2_10_1
: protocols::antibody::clusters
- H2_10_2
: protocols::antibody::clusters
- H2_10_3
: protocols::antibody::clusters
- H2_10_4
: protocols::antibody::clusters
- H2_10_5
: protocols::antibody::clusters
- H2_10_6
: protocols::antibody::clusters
- H2_10_7
: protocols::antibody::clusters
- H2_10_8
: protocols::antibody::clusters
- H2_10_9
: protocols::antibody::clusters
- H2_12_1
: protocols::antibody::clusters
- H2_15_1
: protocols::antibody::clusters
- H2_8_1
: protocols::antibody::clusters
- H2_9_1
: protocols::antibody::clusters
- H2_9_2
: protocols::antibody::clusters
- H2_9_3
: protocols::antibody::clusters
- h2o_hbond
: core::scoring
- H2O_HBOND_SET
: core::scoring::EnergiesCacheableDataType
- h2o_intra
: core::scoring
- h3
: protocols::antibody
- H3
: protocols::antibody
- H3_10_1
: protocols::antibody::clusters
- H3_10_2
: protocols::antibody::clusters
- H3_10_3
: protocols::antibody::clusters
- H3_10_cis5_1
: protocols::antibody::clusters
- H3_11_1
: protocols::antibody::clusters
- H3_11_2
: protocols::antibody::clusters
- H3_12_1
: protocols::antibody::clusters
- H3_12_2
: protocols::antibody::clusters
- H3_12_cis9_1
: protocols::antibody::clusters
- H3_13_1
: protocols::antibody::clusters
- H3_13_2
: protocols::antibody::clusters
- H3_13_3
: protocols::antibody::clusters
- H3_13_cis7_1
: protocols::antibody::clusters
- H3_13_cis8_1
: protocols::antibody::clusters
- H3_14_1
: protocols::antibody::clusters
- H3_14_2
: protocols::antibody::clusters
- H3_14_3
: protocols::antibody::clusters
- H3_14_4
: protocols::antibody::clusters
- H3_14_cis7_1
: protocols::antibody::clusters
- H3_15_1
: protocols::antibody::clusters
- H3_15_2
: protocols::antibody::clusters
- H3_16_1
: protocols::antibody::clusters
- H3_16_2
: protocols::antibody::clusters
- H3_17_1
: protocols::antibody::clusters
- H3_18_1
: protocols::antibody::clusters
- H3_18_2
: protocols::antibody::clusters
- H3_19_1
: protocols::antibody::clusters
- H3_20_1
: protocols::antibody::clusters
- H3_21_1
: protocols::antibody::clusters
- H3_22_1
: protocols::antibody::clusters
- H3_24_1
: protocols::antibody::clusters
- H3_26_1
: protocols::antibody::clusters
- H3_5_1
: protocols::antibody::clusters
- H3_5_2
: protocols::antibody::clusters
- H3_6_1
: protocols::antibody::clusters
- H3_7_1
: protocols::antibody::clusters
- H3_7_2
: protocols::antibody::clusters
- H3_7_3
: protocols::antibody::clusters
- H3_7_cis4_1
: protocols::antibody::clusters
- H3_8_1
: protocols::antibody::clusters
- H3_8_2
: protocols::antibody::clusters
- H3_9_1
: protocols::antibody::clusters
- H3_9_2
: protocols::antibody::clusters
- H3BaseTypeEnum
: protocols::antibody
- H3BaseTypeEnum_start
: protocols::antibody
- H3BaseTypeEnum_total
: protocols::antibody
- H3CterInsertCOP
: protocols::antibody
- H3CterInsertOP
: protocols::antibody
- H3PerturbCCDCOP
: protocols::antibody
- H3PerturbCCDOP
: protocols::antibody
- H3RefineCCDCOP
: protocols::antibody
- H3RefineCCDOP
: protocols::antibody
- h4
: protocols::antibody
- H4
: protocols::antibody
- H_ACCEPTOR
: core::chemical
- H_ALA
: protocols::match
- H_ARO
: protocols::match
- H_chain_last_loop
: protocols::antibody
- H_DONOR
: core::chemical
- H_SS
: protocols::comparative_modeling::features
- hack_aro
: core::scoring
- HACK_dump_helices()
: core::scoring::motif
- HACK_dump_helix()
: core::scoring::motif
- HackAroEnergyCreator_registrator
: core::init
- half_open_range()
: protocols::forge::methods
- HamiltonianExchangeCOP
: protocols::canonical_sampling
- HamiltonianExchangeOP
: protocols::canonical_sampling
- Hankel
: core::scoring::fiber_diffraction
- hankel_free()
: core::scoring::fiber_diffraction
- hankel_get_p0()
: core::scoring::fiber_diffraction
- hankel_get_rc()
: core::scoring::fiber_diffraction
- hankel_in_machine()
: core::scoring::fiber_diffraction
- hankel_make_input()
: core::scoring::fiber_diffraction
- hankel_make_j()
: core::scoring::fiber_diffraction
- hankel_make_rp()
: core::scoring::fiber_diffraction
- hankel_make_snn()
: core::scoring::fiber_diffraction
- hankel_r_div()
: core::scoring::fiber_diffraction
- hankel_r_mult()
: core::scoring::fiber_diffraction
- hankel_set_alpha()
: core::scoring::fiber_diffraction
- hankel_trans_no_lec()
: core::scoring::fiber_diffraction
- HarmonicFuncCOP
: core::scoring::func
- HarmonicFuncOP
: core::scoring::func
- has()
: core::chemical
, core::chemical::sdf
- has_any_false_selection()
: core::select::residue_selector
- has_any_true_selection()
: core::select::residue_selector
- has_aromatic()
: protocols::constel
- has_assigned_coords()
: core::chemical
- has_chain()
: core::pose
- has_element()
: protocols::frags
- has_exocyclic_glycosidic_linkage()
: core::conformation::carbohydrates
- has_explicit_Hs()
: core::chemical::rdkit
- has_implicit_Hs()
: core::chemical::rdkit
- has_incomplete_connections()
: protocols::ligand_docking
- has_native_sequence()
: protocols::antibody::design
- has_observer_of_type()
: protocols::network
- has_option()
: core::select::residue_selector
, protocols::simple_moves
- HAS_ORBITALS
: core::chemical
- has_orientation_and_pleating()
: core::scoring::dssp
- has_physical_Hs()
: core::chemical::rdkit
- has_prox_termini()
: protocols::constel
- has_rna_secstruct_legacy()
: core::pose::rna::secstruct_legacy
- has_severe_pep_bond_geom_issues()
: protocols::loops
- has_sm_data()
: core::simple_metrics
- has_virtual_rna_residue_variant_type()
: core::pose::rna
- HASH_POSITION_GRID_BASE
: protocols::loophash
- hash_value()
: boost::tuples
, protocols::abinitio
- HashedSmartAssemblyCOP
: protocols::sewing::data_storage
- HashedSmartAssemblyOP
: protocols::sewing::data_storage
- HasherCOP
: protocols::legacy_sewing
, protocols::sewing::hashing
- HasherOP
: protocols::legacy_sewing
, protocols::sewing::hashing
- HashKey
: protocols::legacy_sewing
, protocols::sewing::hashing
- HashMap
: protocols::legacy_sewing
, protocols::sewing::hashing
- hasPoseExtraScore()
: core::pose
- hasPoseExtraScore_str()
: core::pose
- hb_energy()
: core::scoring::hbonds
- hb_energy_deriv()
: core::scoring::hbonds
- hb_energy_deriv_u()
: core::scoring::hbonds
- hb_energy_deriv_u2()
: core::scoring::hbonds
- hb_env_dep_burial_lin()
: core::scoring::hbonds
- hb_env_dep_burial_tk()
: core::scoring::hbonds
- hb_eval_type()
: core::scoring::hbonds
- HB_EVAL_TYPE_COUNT
: core::scoring::hbonds
- hb_eval_type_weight()
: core::scoring::hbonds
- hbacc_AHX
: core::scoring::hbonds
- hbacc_CXA
: core::scoring::hbonds
- hbacc_CXL
: core::scoring::hbonds
- hbacc_GENERIC_RINGBB
: core::scoring::hbonds
- hbacc_GENERIC_RINGSC
: core::scoring::hbonds
- hbacc_GENERIC_SP2BB
: core::scoring::hbonds
- hbacc_GENERIC_SP2SC
: core::scoring::hbonds
- hbacc_GENERIC_SP3BB
: core::scoring::hbonds
- hbacc_GENERIC_SP3SC
: core::scoring::hbonds
- hbacc_H2O
: core::scoring::hbonds
- hbacc_HXL
: core::scoring::hbonds
- hbacc_IMD
: core::scoring::hbonds
- hbacc_IME
: core::scoring::hbonds
- hbacc_MAX
: core::scoring::hbonds
- hbacc_NONE
: core::scoring::hbonds
- hbacc_PBA
: core::scoring::hbonds
- hbacc_PCA_DNA
: core::scoring::hbonds
- hbacc_PCA_RNA
: core::scoring::hbonds
- hbacc_PES_DNA
: core::scoring::hbonds
- hbacc_PES_RNA
: core::scoring::hbonds
- hbacc_RRI_DNA
: core::scoring::hbonds
- hbacc_RRI_RNA
: core::scoring::hbonds
- HBAccChemType
: core::scoring::hbonds
- hbdef_AHDIST
: protocols::features
- hbdef_ENERGY
: protocols::features
- hbdef_MAX
: protocols::features
- hbdef_NONE
: protocols::features
- HBDefType
: protocols::features
- hbderiv_ABE_GO
: core::scoring::hbonds
- hbderiv_ABE_GO_GEOMSOL_OCC_ACC
: core::scoring::hbonds
- hbderiv_ABE_GO_GEOMSOL_OCC_DON
: core::scoring::hbonds
- hbderiv_MAX
: core::scoring::hbonds
- hbderiv_NONE
: core::scoring::hbonds
- HBDerivType
: core::scoring::hbonds
- hbdon_AHX
: core::scoring::hbonds
- hbdon_AMO
: core::scoring::hbonds
- hbdon_CXA
: core::scoring::hbonds
- hbdon_GDE
: core::scoring::hbonds
- hbdon_GDH
: core::scoring::hbonds
- hbdon_GENERIC_BB
: core::scoring::hbonds
- hbdon_GENERIC_SC
: core::scoring::hbonds
- hbdon_H2O
: core::scoring::hbonds
- hbdon_HXL
: core::scoring::hbonds
- hbdon_IMD
: core::scoring::hbonds
- hbdon_IME
: core::scoring::hbonds
- hbdon_IND
: core::scoring::hbonds
- hbdon_MAX
: core::scoring::hbonds
- hbdon_NONE
: core::scoring::hbonds
- hbdon_PBA
: core::scoring::hbonds
- HBDonChemType
: core::scoring::hbonds
- hbe_dAHXaAHX
: core::scoring::hbonds
- hbe_dAHXaCXA
: core::scoring::hbonds
- hbe_dAHXaCXL
: core::scoring::hbonds
- hbe_dAHXaH2O
: core::scoring::hbonds
- hbe_dAHXaHXL
: core::scoring::hbonds
- hbe_dAHXaIMD
: core::scoring::hbonds
- hbe_dAHXaIME
: core::scoring::hbonds
- hbe_dAHXaPBAsepother
: core::scoring::hbonds
- hbe_dAHXaPBAsepPM1
: core::scoring::hbonds
- hbe_dAHXaPCA_DNA
: core::scoring::hbonds
- hbe_dAHXaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dAHXaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dAHXaPES_DNA
: core::scoring::hbonds
- hbe_dAHXaPES_RNAsepother
: core::scoring::hbonds
- hbe_dAHXaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dAHXaRRI_DNA
: core::scoring::hbonds
- hbe_dAHXaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dAHXaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dAMINOaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dAMINOaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dAMINOaCARBOXYL
: core::scoring::hbonds
- hbe_dAMINOaHYDROXYL
: core::scoring::hbonds
- hbe_dAMINOaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dAMINOaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dAMINOaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dAMINOaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dAMINOaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dAMINOaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dAMINOaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dAMINOaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dAMINOaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dAMINOaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dAMINOaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dAMINOaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dAMINOaWATER
: core::scoring::hbonds
- hbe_dAMOaAHX
: core::scoring::hbonds
- hbe_dAMOaCXA
: core::scoring::hbonds
- hbe_dAMOaCXL
: core::scoring::hbonds
- hbe_dAMOaH2O
: core::scoring::hbonds
- hbe_dAMOaHXL
: core::scoring::hbonds
- hbe_dAMOaIMD
: core::scoring::hbonds
- hbe_dAMOaIME
: core::scoring::hbonds
- hbe_dAMOaPBAsepother
: core::scoring::hbonds
- hbe_dAMOaPBAsepPM1
: core::scoring::hbonds
- hbe_dAMOaPCA_DNA
: core::scoring::hbonds
- hbe_dAMOaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dAMOaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dAMOaPES_DNA
: core::scoring::hbonds
- hbe_dAMOaPES_RNAsepother
: core::scoring::hbonds
- hbe_dAMOaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dAMOaRRI_DNA
: core::scoring::hbonds
- hbe_dAMOaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dAMOaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaCARBOXYL
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaHYDROXYL
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dAROMATIC_HYDROXYLaWATER
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaCARBOXYL
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaHYDROXYL
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dCARBOXAMIDEaWATER
: core::scoring::hbonds
- hbe_dCXAaAHX
: core::scoring::hbonds
- hbe_dCXAaCXA
: core::scoring::hbonds
- hbe_dCXAaCXL
: core::scoring::hbonds
- hbe_dCXAaH2O
: core::scoring::hbonds
- hbe_dCXAaHXL
: core::scoring::hbonds
- hbe_dCXAaIMD
: core::scoring::hbonds
- hbe_dCXAaIME
: core::scoring::hbonds
- hbe_dCXAaPBAsepother
: core::scoring::hbonds
- hbe_dCXAaPBAsepPM1
: core::scoring::hbonds
- hbe_dCXAaPCA_DNA
: core::scoring::hbonds
- hbe_dCXAaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dCXAaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dCXAaPES_DNA
: core::scoring::hbonds
- hbe_dCXAaPES_RNAsepother
: core::scoring::hbonds
- hbe_dCXAaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dCXAaRRI_DNA
: core::scoring::hbonds
- hbe_dCXAaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dCXAaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaCARBOXYL
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaHYDROXYL
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_DNA
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepother
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_CARBONY_RNAsepPM1
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dDIHYDRO_GUANIDINIUMaWATER
: core::scoring::hbonds
- hbe_dGDEaAHX
: core::scoring::hbonds
- hbe_dGDEaCXA
: core::scoring::hbonds
- hbe_dGDEaCXL
: core::scoring::hbonds
- hbe_dGDEaH2O
: core::scoring::hbonds
- hbe_dGDEaHXL
: core::scoring::hbonds
- hbe_dGDEaIMD
: core::scoring::hbonds
- hbe_dGDEaIME
: core::scoring::hbonds
- hbe_dGDEaPBAsepother
: core::scoring::hbonds
- hbe_dGDEaPBAsepPM1
: core::scoring::hbonds
- hbe_dGDEaPCA_DNA
: core::scoring::hbonds
- hbe_dGDEaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dGDEaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dGDEaPES_DNA
: core::scoring::hbonds
- hbe_dGDEaPES_RNAsepother
: core::scoring::hbonds
- hbe_dGDEaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dGDEaRRI_DNA
: core::scoring::hbonds
- hbe_dGDEaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dGDEaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dGDHaAHX
: core::scoring::hbonds
- hbe_dGDHaCXA
: core::scoring::hbonds
- hbe_dGDHaCXL
: core::scoring::hbonds
- hbe_dGDHaH2O
: core::scoring::hbonds
- hbe_dGDHaHXL
: core::scoring::hbonds
- hbe_dGDHaIMD
: core::scoring::hbonds
- hbe_dGDHaIME
: core::scoring::hbonds
- hbe_dGDHaPBAsepother
: core::scoring::hbonds
- hbe_dGDHaPBAsepPM1
: core::scoring::hbonds
- hbe_dGDHaPCA_DNA
: core::scoring::hbonds
- hbe_dGDHaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dGDHaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dGDHaPES_DNA
: core::scoring::hbonds
- hbe_dGDHaPES_RNAsepother
: core::scoring::hbonds
- hbe_dGDHaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dGDHaRRI_DNA
: core::scoring::hbonds
- hbe_dGDHaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dGDHaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaCARBOXYL
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaHYDROXYL
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dGUANIDINIUM_EPSILONaWATER
: core::scoring::hbonds
- hbe_dH2OaAHX
: core::scoring::hbonds
- hbe_dH2OaCXA
: core::scoring::hbonds
- hbe_dH2OaCXL
: core::scoring::hbonds
- hbe_dH2OaH2O
: core::scoring::hbonds
- hbe_dH2OaHXL
: core::scoring::hbonds
- hbe_dH2OaIMD
: core::scoring::hbonds
- hbe_dH2OaIME
: core::scoring::hbonds
- hbe_dH2OaPBA
: core::scoring::hbonds
- hbe_dH2OaPCA_DNA
: core::scoring::hbonds
- hbe_dH2OaPCA_RNA
: core::scoring::hbonds
- hbe_dH2OaPES_DNA
: core::scoring::hbonds
- hbe_dH2OaPES_RNA
: core::scoring::hbonds
- hbe_dH2OaRRI_DNA
: core::scoring::hbonds
- hbe_dH2OaRRI_RNA
: core::scoring::hbonds
- hbe_dHXLaAHX
: core::scoring::hbonds
- hbe_dHXLaCXA
: core::scoring::hbonds
- hbe_dHXLaCXL
: core::scoring::hbonds
- hbe_dHXLaH2O
: core::scoring::hbonds
- hbe_dHXLaHXL
: core::scoring::hbonds
- hbe_dHXLaIMD
: core::scoring::hbonds
- hbe_dHXLaIME
: core::scoring::hbonds
- hbe_dHXLaPBAsepother
: core::scoring::hbonds
- hbe_dHXLaPBAsepPM1
: core::scoring::hbonds
- hbe_dHXLaPCA_DNA
: core::scoring::hbonds
- hbe_dHXLaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dHXLaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dHXLaPES_DNA
: core::scoring::hbonds
- hbe_dHXLaPES_RNAsepother
: core::scoring::hbonds
- hbe_dHXLaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dHXLaRRI_DNA
: core::scoring::hbonds
- hbe_dHXLaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dHXLaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dHYDROXYLaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dHYDROXYLaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dHYDROXYLaCARBOXYL
: core::scoring::hbonds
- hbe_dHYDROXYLaHYDROXYL
: core::scoring::hbonds
- hbe_dHYDROXYLaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dHYDROXYLaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dHYDROXYLaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dHYDROXYLaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dHYDROXYLaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dHYDROXYLaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dHYDROXYLaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dHYDROXYLaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dHYDROXYLaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dHYDROXYLaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dHYDROXYLaWATER
: core::scoring::hbonds
- hbe_dIMDaAHX
: core::scoring::hbonds
- hbe_dIMDaCXA
: core::scoring::hbonds
- hbe_dIMDaCXL
: core::scoring::hbonds
- hbe_dIMDaH2O
: core::scoring::hbonds
- hbe_dIMDaHXL
: core::scoring::hbonds
- hbe_dIMDaIMD
: core::scoring::hbonds
- hbe_dIMDaIME
: core::scoring::hbonds
- hbe_dIMDaPBAsepother
: core::scoring::hbonds
- hbe_dIMDaPBAsepPM1
: core::scoring::hbonds
- hbe_dIMDaPCA_DNA
: core::scoring::hbonds
- hbe_dIMDaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dIMDaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMDaPES_DNA
: core::scoring::hbonds
- hbe_dIMDaPES_RNAsepother
: core::scoring::hbonds
- hbe_dIMDaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMDaRRI_DNA
: core::scoring::hbonds
- hbe_dIMDaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dIMDaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMEaAHX
: core::scoring::hbonds
- hbe_dIMEaCXA
: core::scoring::hbonds
- hbe_dIMEaCXL
: core::scoring::hbonds
- hbe_dIMEaH2O
: core::scoring::hbonds
- hbe_dIMEaHXL
: core::scoring::hbonds
- hbe_dIMEaIMD
: core::scoring::hbonds
- hbe_dIMEaIME
: core::scoring::hbonds
- hbe_dIMEaPBAsepother
: core::scoring::hbonds
- hbe_dIMEaPBAsepPM1
: core::scoring::hbonds
- hbe_dIMEaPCA_DNA
: core::scoring::hbonds
- hbe_dIMEaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dIMEaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMEaPES_DNA
: core::scoring::hbonds
- hbe_dIMEaPES_RNAsepother
: core::scoring::hbonds
- hbe_dIMEaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMEaRRI_DNA
: core::scoring::hbonds
- hbe_dIMEaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dIMEaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaCARBOXYL
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaHYDROXYL
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_DELTAaWATER
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaCARBOXYL
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaHYDXROXYL
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dIMIDAZOL_EPSILONaWATER
: core::scoring::hbonds
- hbe_dINDaAHX
: core::scoring::hbonds
- hbe_dINDaCXA
: core::scoring::hbonds
- hbe_dINDaCXL
: core::scoring::hbonds
- hbe_dINDaH2O
: core::scoring::hbonds
- hbe_dINDaHXL
: core::scoring::hbonds
- hbe_dINDaIMD
: core::scoring::hbonds
- hbe_dINDaIME
: core::scoring::hbonds
- hbe_dINDaPBAsepother
: core::scoring::hbonds
- hbe_dINDaPBAsepPM1
: core::scoring::hbonds
- hbe_dINDaPCA_DNA
: core::scoring::hbonds
- hbe_dINDaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dINDaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dINDaPES_DNA
: core::scoring::hbonds
- hbe_dINDaPES_RNAsepother
: core::scoring::hbonds
- hbe_dINDaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dINDaRRI_DNA
: core::scoring::hbonds
- hbe_dINDaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dINDaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dINDOLaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dINDOLaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dINDOLaCARBOXYL
: core::scoring::hbonds
- hbe_dINDOLaHYDROXYL
: core::scoring::hbonds
- hbe_dINDOLaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dINDOLaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dINDOLaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dINDOLaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dINDOLaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dINDOLaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dINDOLaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dINDOLaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dINDOLaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dINDOLaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dINDOLaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dINDOLaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dINDOLaWATER
: core::scoring::hbonds
- hbe_dPBAaAHXsepother
: core::scoring::hbonds
- hbe_dPBAaAHXsepPM1
: core::scoring::hbonds
- hbe_dPBAaCXAsepother
: core::scoring::hbonds
- hbe_dPBAaCXAsepPM1
: core::scoring::hbonds
- hbe_dPBAaCXLsepother
: core::scoring::hbonds
- hbe_dPBAaCXLsepPM1
: core::scoring::hbonds
- hbe_dPBAaH2O
: core::scoring::hbonds
- hbe_dPBAaHXLsepother
: core::scoring::hbonds
- hbe_dPBAaHXLsepPM1
: core::scoring::hbonds
- hbe_dPBAaIMDsepother
: core::scoring::hbonds
- hbe_dPBAaIMDsepPM1
: core::scoring::hbonds
- hbe_dPBAaIMEsepother
: core::scoring::hbonds
- hbe_dPBAaIMEsepPM1
: core::scoring::hbonds
- hbe_dPBAaPBAsepM2turn
: core::scoring::hbonds
- hbe_dPBAaPBAsepM3turn
: core::scoring::hbonds
- hbe_dPBAaPBAsepM4helix
: core::scoring::hbonds
- hbe_dPBAaPBAsepother
: core::scoring::hbonds
- hbe_dPBAaPBAsepP2turn
: core::scoring::hbonds
- hbe_dPBAaPBAsepP3turn
: core::scoring::hbonds
- hbe_dPBAaPBAsepP4helix
: core::scoring::hbonds
- hbe_dPBAaPBAsepPM1
: core::scoring::hbonds
- hbe_dPBAaPCA_DNAsepother
: core::scoring::hbonds
- hbe_dPBAaPCA_DNAsepPM1
: core::scoring::hbonds
- hbe_dPBAaPCA_RNAsepother
: core::scoring::hbonds
- hbe_dPBAaPCA_RNAsepPM1
: core::scoring::hbonds
- hbe_dPBAaPES_DNAsepother
: core::scoring::hbonds
- hbe_dPBAaPES_DNAsepPM1
: core::scoring::hbonds
- hbe_dPBAaPES_RNAsepother
: core::scoring::hbonds
- hbe_dPBAaPES_RNAsepPM1
: core::scoring::hbonds
- hbe_dPBAaRRI_DNAsepother
: core::scoring::hbonds
- hbe_dPBAaRRI_DNAsepPM1
: core::scoring::hbonds
- hbe_dPBAaRRI_RNAsepother
: core::scoring::hbonds
- hbe_dPBAaRRI_RNAsepPM1
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepother
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaAROMATIC_HYDROXYLsepPM1
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepother
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaCARBOXAMIDEsepPM1
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepother
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaCARBOXYLsepPM1
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepother
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_DELTAsepPM1
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepother
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaIMIDAZOL_EPSILONsepPM1
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM2turn
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM3turn
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepM4helix
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepother
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP2turn
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP3turn
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepP4helix
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaPROTEIN_BB_AMIDEsepPM1
: core::scoring::hbonds
- hbe_dPROTEIN_BB_AMIDEaWATER
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepother
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaHYDROXYLsepPM1
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepother
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_DNAsepPM1
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepother
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_CARBONYL_RNAsepPM1
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepother
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_DNAsepPM1
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaPHOSPHATE_ESTER_RNAsepPM1
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepother
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_DNAsepPM1
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dPROTEINS_BB_AMIDEaRIBOSE_RING_RNAsepPM1
: core::scoring::hbonds
- hbe_dWATERaAROMATIC_HYDROXYL
: core::scoring::hbonds
- hbe_dWATERaCARBOXAMIDE
: core::scoring::hbonds
- hbe_dWATERaCARBOXYL
: core::scoring::hbonds
- hbe_dWATERaHYDROXYL
: core::scoring::hbonds
- hbe_dWATERaIMIDAZOL_DELTA
: core::scoring::hbonds
- hbe_dWATERaIMIDAZOL_EPSILON
: core::scoring::hbonds
- hbe_dWATERaPHOSPHATE_CARBONYL_DNA
: core::scoring::hbonds
- hbe_dWATERaPHOSPHATE_CARBONYL_RNA
: core::scoring::hbonds
- hbe_dWATERaPHOSPHATE_ESTER_DNA
: core::scoring::hbonds
- hbe_dWATERaPHOSPHATE_ESTER_RNAsepother
: core::scoring::hbonds
- hbe_dWATERaRIBOSE_RING_DNA
: core::scoring::hbonds
- hbe_dWATERaRIBOSE_RING_RNAsepother
: core::scoring::hbonds
- hbe_dWATERaWATER
: core::scoring::hbonds
- hbe_GENERIC_RINGBB_LR
: core::scoring::hbonds
- hbe_GENERIC_RINGBB_SR
: core::scoring::hbonds
- hbe_GENERIC_RINGBSC_LR
: core::scoring::hbonds
- hbe_GENERIC_RINGBSC_SR
: core::scoring::hbonds
- hbe_GENERIC_RINGSCSC_LR
: core::scoring::hbonds
- hbe_GENERIC_RINGSCSC_SR
: core::scoring::hbonds
- hbe_GENERIC_SP2BB_LR
: core::scoring::hbonds
- hbe_GENERIC_SP2BB_SR
: core::scoring::hbonds
- hbe_GENERIC_SP2BSC_LR
: core::scoring::hbonds
- hbe_GENERIC_SP2BSC_SR
: core::scoring::hbonds
- hbe_GENERIC_SP2SCSC_LR
: core::scoring::hbonds
- hbe_GENERIC_SP2SCSC_SR
: core::scoring::hbonds
- hbe_GENERIC_SP3BB_LR
: core::scoring::hbonds
- hbe_GENERIC_SP3BB_SR
: core::scoring::hbonds
- hbe_GENERIC_SP3BSC_LR
: core::scoring::hbonds
- hbe_GENERIC_SP3BSC_SR
: core::scoring::hbonds
- hbe_GENERIC_SP3SCSC_LR
: core::scoring::hbonds
- hbe_GENERIC_SP3SCSC_SR
: core::scoring::hbonds
- hbe_is_BB_type()
: core::scoring::hbonds
- hbe_is_SC_type()
: core::scoring::hbonds
- hbe_MAX
: core::scoring::hbonds
- hbe_NONE
: core::scoring::hbonds
- hbe_UNKNOWN
: core::scoring::hbonds
- hbe_WATERaPROTEIN_BB_AMIDE
: core::scoring::hbonds
- HBEval_lookup
: core::scoring::hbonds
- HBEval_lookup_initializer()
: core::scoring::hbonds
- HBEvalType
: core::scoring::hbonds
- hbgd_AHD
: core::scoring::hbonds
- hbgd_AHdist
: core::scoring::hbonds
- hbgd_chi
: core::scoring::hbonds
- hbgd_cosAHD
: core::scoring::hbonds
- hbgd_cosBAH
: core::scoring::hbonds
- hbgd_MAX
: core::scoring::hbonds
- hbgd_NONE
: core::scoring::hbonds
- HBGeoDimType
: core::scoring::hbonds
- hbnet
: core::scoring
- hbnet_one_body_energies()
: protocols::hbnet
- hbnet_symm_one_body_energies()
: protocols::hbnet
- HBNetCOP
: protocols::hbnet
- HBNetEnergyCOP
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyCreator_registrator
: core::init
- HBNetEnergyOP
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyRamp_end_of_list
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyRamping
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyRampINVALID
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyRampLinear
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyRampLogarithmic
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyRampQuadratic
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetEnergyRampSquareRoot
: core::pack::guidance_scoreterms::hbnet_energy
- HBNetOP
: protocols::hbnet
- HBNetScoreCOP
: protocols::hbnet
- HBNetScoreOP
: protocols::hbnet
- HBNetStapleInterfaceCOP
: protocols::hbnet
- HBNetStapleInterfaceOP
: protocols::hbnet
- hbond
: core::scoring
- hbond_acceptor_tracer()
: protocols::ligand_docking
- hbond_bb_sc
: core::scoring
- hbond_compute_energy()
: core::scoring::hbonds
- hbond_donor_tracer()
: protocols::ligand_docking
- hbond_evaluation_type()
: core::scoring::hbonds
- hbond_exists_in_vector()
: protocols::hbnet
- hbond_graph_from_partial_rotsets()
: core::pack::hbonds
- hbond_intra
: core::scoring
- hbond_lr_bb
: core::scoring
- hbond_lr_bb_sc
: core::scoring
- hbond_method
: core::scoring::methods
- hbond_ref
: core::scoring
- hbond_res_data
: core::scoring
- hbond_respair_data
: core::scoring
- hbond_sc
: core::scoring
- HBOND_SET
: core::scoring::EnergiesCacheableDataType
- hbond_sr_bb
: core::scoring
- hbond_sr_bb_sc
: core::scoring
- HBOND_TRIE_COLLECTION
: core::scoring::EnergiesCacheableDataType
- hbond_wat
: core::scoring
- HBondCOP
: core::scoring::hbonds
- HBondDatabaseCOP
: core::scoring::hbonds
- HBondDatabaseOP
: core::scoring::hbonds
- HBondDataCOP
: protocols::constraint_generator
- HBondDataCOPs
: protocols::constraint_generator
- HBondDataOP
: protocols::constraint_generator
- HBondDataOPs
: protocols::constraint_generator
- hbonded()
: protocols::protein_interface_design
- hbonded_atom()
: protocols::protein_interface_design
- HBondEdgeCOP
: core::scoring::hbonds::graph
- HBondEdgeOP
: core::scoring::hbonds::graph
- HBondEnergyCAP
: core::energy_methods
, core::scoring::hbonds
- HBondEnergyCOP
: core::energy_methods
, core::scoring::hbonds
- HBondEnergyCreator_registrator
: core::init
- HBondEnergyOP
: core::energy_methods
, core::scoring::hbonds
- HBondFeaturesCOP
: protocols::features
- HBondFeaturesOP
: protocols::features
- HBondGraphCOP
: core::scoring::hbonds::graph
- HBondGraphInitializerIGCOP
: core::pack::hbonds
- HBondGraphInitializerIGOP
: core::pack::hbonds
- HBondGraphOP
: core::scoring::hbonds::graph
- HbondMetricCOP
: core::simple_metrics::per_residue_metrics
- HbondMetricOP
: core::simple_metrics::per_residue_metrics
- HBondNetStructCOP
: protocols::hbnet
- HBondNetStructOP
: protocols::hbnet
- HBondNodeCOP
: core::scoring::hbonds::graph
- HBondNodeOP
: core::scoring::hbonds::graph
- HBondOP
: core::scoring::hbonds
- HBondOptionsCOP
: core::scoring::hbonds
- HBondOptionsOP
: core::scoring::hbonds
- HBondParameterFeaturesCOP
: protocols::features
- HBondParameterFeaturesOP
: protocols::features
- HBondResidueMinDataCOP
: core::scoring::hbonds
- HBondResidueMinDataOP
: core::scoring::hbonds
- HBondResPairMinDataCOP
: core::scoring::hbonds
- HBondResPairMinDataOP
: core::scoring::hbonds
- HBondResStructCOP
: protocols::hbnet
- HBondResStructOP
: protocols::hbnet
- HBondRotamerTrieCOP
: core::scoring::hbonds::hbtrie
- HBondRotamerTrieOP
: core::scoring::hbonds::hbtrie
- HBondSelectorCOP
: protocols::residue_selectors
- HBondSelectorOP
: protocols::residue_selectors
- HBondSetCOP
: core::scoring::hbonds
- HBondSetOP
: core::scoring::hbonds
- HbondsToResidueFilterCOP
: protocols::protein_interface_design::filters
- HbondsToResidueFilterCOPs
: protocols::protein_interface_design::filters
- HbondsToResidueFilterOP
: protocols::protein_interface_design::filters
- HbondsToResidueFilterOPs
: protocols::protein_interface_design::filters
- HBondsTrieVsTrieCachedDataContainerCOP
: core::scoring::hbonds::hbtrie
- HBondsTrieVsTrieCachedDataContainerOP
: core::scoring::hbonds::hbtrie
- HBondTypeManagerCOP
: core::scoring::hbonds
- HBondTypeManagerOP
: core::scoring::hbonds
- HBondWeightType
: core::scoring::hbonds
- HBP_FinalFullatomRefinementMoveGeneratorCOP
: protocols::helical_bundle_predict
- HBP_FinalFullatomRefinementMoveGeneratorOP
: protocols::helical_bundle_predict
- HBP_HelixCoilMoveGeneratorCOP
: protocols::helical_bundle_predict
- HBP_HelixCoilMoveGeneratorOP
: protocols::helical_bundle_predict
- HBP_MoveGeneratorCOP
: protocols::helical_bundle_predict
- HBP_MoveGeneratorOP
: protocols::helical_bundle_predict
- HBP_SigmoidalTemperatureScheduleGeneratorCOP
: protocols::helical_bundle_predict
- HBP_SigmoidalTemperatureScheduleGeneratorOP
: protocols::helical_bundle_predict
- HBP_TemperatureScheduleGeneratorCOP
: protocols::helical_bundle_predict
- HBP_TemperatureScheduleGeneratorOP
: protocols::helical_bundle_predict
- HBPEndPosition
: protocols::helical_bundle_predict
- HBPHelixAssignmentsCOP
: protocols::helical_bundle_predict
- HBPHelixAssignmentsOP
: protocols::helical_bundle_predict
- HBPHelixCOP
: protocols::helical_bundle_predict
- HBPHelixOP
: protocols::helical_bundle_predict
- HBPHelixParametersCOP
: protocols::helical_bundle_predict
- HBPHelixParametersOP
: protocols::helical_bundle_predict
- HBPStartPosition
: protocols::helical_bundle_predict
- HBS_POST
: core::chemical
- HBS_PRE
: core::chemical
- HBSeqSep
: core::scoring::hbonds
- HbsPatcherCOP
: protocols::simple_moves::hbs
- HbsPatcherOP
: protocols::simple_moves::hbs
- hbw_LR_BB
: core::scoring::hbonds
- hbw_LR_BB_SC
: core::scoring::hbonds
- hbw_MAX
: core::scoring::hbonds
- hbw_NONE
: core::scoring::hbonds
- hbw_SC
: core::scoring::hbonds
- hbw_SR_BB
: core::scoring::hbonds
- hbw_SR_BB_SC
: core::scoring::hbonds
- hConvergenceCheckOP
: protocols::abinitio
, protocols::hybridization
- He
: core::chemical::element
- HEADER
: core::io::pdb
, update_ResidueType_enum_files
- header_from_atom_tree_diff()
: core::import_pose::atom_tree_diffs
- HeaderInformationCOP
: core::io
- HeaderInformationOP
: core::io
- heap_down()
: protocols::frags
- heap_extract()
: protocols::frags
- heap_init()
: protocols::frags
- heap_insert()
: protocols::frags
- heap_replace()
: protocols::frags
- heap_up()
: protocols::frags
- heavy_atom_is_polar()
: core::pose::rna
- heavy_atom_names_match()
: core::chemical
- heavy_atom_tracer()
: protocols::ligand_docking
- HeavyAtomED
: core::chemical
- HeavyAtomEIter
: core::chemical
- HeavyAtomGraph
: core::chemical
- HeavyAtomOutEdgeIter
: core::chemical
- HeavyAtomOutEdgeIterPair
: core::chemical
- HeavyAtomVD
: core::chemical
- HeavyAtomVIter
: core::chemical
- HeavyAtomVIterPair
: core::chemical
- HeavyAtomWithHydrogensEIter
: core::chemical
- HeavyAtomWithHydrogensGraph
: core::chemical
- HeavyAtomWithHydrogensVIter
: core::chemical
- HeavyAtomWithHydrogensVIterPair
: core::chemical
- HeavyAtomWithPolarHydrogensEIter
: core::chemical
- HeavyAtomWithPolarHydrogensGraph
: core::chemical
- HeavyAtomWithPolarHydrogensVIter
: core::chemical
- HeavyAtomWithPolarHydrogensVIterPair
: core::chemical
- HedgeArchiveCOP
: protocols::abinitio
- HedgeArchiveOP
: protocols::abinitio
- HelicalBundlePredictApplicationCOP
: protocols::helical_bundle_predict
- HelicalBundlePredictApplicationOP
: protocols::helical_bundle_predict
- HelicalBundlePredictApplicationOptionsCOP
: protocols::helical_bundle_predict
- HelicalBundlePredictApplicationOptionsOP
: protocols::helical_bundle_predict
- HelicalFragmentCOP
: protocols::features::helixAssembly
- HelicalFragmentOP
: protocols::features::helixAssembly
- Helices
: protocols::fldsgn::topology
- HELIX
: core::io::pdb
- helix
: protocols::loops::loop_closure::ccd
- HelixArchitectCOP
: protocols::denovo_design::architects
- HelixArchitectOP
: protocols::denovo_design::architects
- HelixBendFilterCOP
: protocols::fldsgn::filters
- HelixBendFilterOP
: protocols::fldsgn::filters
- HelixBundleFeaturesCOP
: protocols::features::helixAssembly
- HelixBundleFeaturesOP
: protocols::features::helixAssembly
- HelixCOP
: protocols::fldsgn::topology
- HelixFromSequenceCOP
: protocols::membrane
- HelixFromSequenceOP
: protocols::membrane
- HelixHelixAngleFilterCOP
: protocols::simple_filters
- HelixHelixAngleFilterOP
: protocols::simple_filters
- HelixKinkFilterCOP
: protocols::fldsgn::filters
- HelixKinkFilterOP
: protocols::fldsgn::filters
- HelixOP
: protocols::fldsgn::topology
- HelixPairingCOP
: protocols::denovo_design::components
, protocols::fldsgn::topology
- HelixPairingCOPs
: protocols::denovo_design::components
- HelixPairingFilterCOP
: protocols::fldsgn::filters
- HelixPairingFilterOP
: protocols::fldsgn::filters
- HelixPairingOP
: protocols::denovo_design::components
, protocols::fldsgn::topology
- HelixPairingOPs
: protocols::denovo_design::components
- HelixPairings
: protocols::fldsgn::topology
- HelixPairingSetCOP
: protocols::fldsgn::topology
- HelixPairingSetOP
: protocols::fldsgn::topology
- HelixPerturberCOP
: protocols::denovo_design::components
- HelixPerturberOP
: protocols::denovo_design::components
- HelixRotateCOP
: protocols::nonlocal
- HelixRotateOP
: protocols::nonlocal
- HelixSheetPairingCOP
: protocols::denovo_design::components
- HelixSheetPairingCOPs
: protocols::denovo_design::components
- HelixSheetPairingOP
: protocols::denovo_design::components
- HelixSheetPairingOPs
: protocols::denovo_design::components
- help_load_data()
: protocols::sasa_scores
- HEPTOSE
: core::chemical
- HET
: core::io::pdb
- HETATM
: core::io::pdb
- HETNAM
: core::io::pdb
- HETSYN
: core::io::pdb
- HEXAGONAL
: protocols::cryst
- HEXOSE
: core::chemical
- Hf
: core::chemical::element
- Hg
: core::chemical::element
- HHydrogenAtomEIter
: core::chemical
- HIERARCHICAL_HYBRID_JD_MPI_SORT_TYPE
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_JobResultsSummaryCOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_JobResultsSummaryCOPs
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_JobResultsSummaryOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_JobResultsSummaryOPs
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_PNearToArbitraryStateSummaryCOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_PNearToArbitraryStateSummaryOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_ResultsSummaryBaseCOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_ResultsSummaryBaseOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_RMSDToBestSummaryCOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_RMSDToBestSummaryOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_SASASummaryCOP
: protocols::cyclic_peptide_predict
- HierarchicalHybridJD_SASASummaryOP
: protocols::cyclic_peptide_predict
- HierarchicalLevelCOP
: protocols::canonical_sampling::mc_convergence_checks
- HierarchicalLevelOP
: protocols::canonical_sampling::mc_convergence_checks
- high_res_docker_tracer()
: protocols::ligand_docking
- HighResDockerCOP
: protocols::ligand_docking
- HighResDockerCOPs
: protocols::ligand_docking
- HighResDockerOP
: protocols::ligand_docking
- HighResDockerOPs
: protocols::ligand_docking
- HighResEnsembleCOP
: protocols::ligand_docking
- HighResEnsembleCOPs
: protocols::ligand_docking
- HighResEnsembleOP
: protocols::ligand_docking
- HighResEnsembleOPs
: protocols::ligand_docking
- HILL
: protocols::simple_moves
- his_tyr_connectivity()
: protocols::hbnet
- histogram_from_db()
: core::scoring::disulfides
- HistogramCOP
: protocols::recces
- HistogramOP
: protocols::recces
- HitHasherCOP
: protocols::match
- HitHasherOP
: protocols::match
- HitPtrList
: protocols::match
- HitPtrListCOP
: protocols::match
- HitPtrListOP
: protocols::match
- Ho
: core::chemical::element
- hoh_ref
: core::scoring
- holes
: core::scoring
- holes_decoy
: core::scoring
- holes_min
: core::scoring
- holes_min_mean
: core::scoring
- holes_resl
: core::scoring
- HolesEnergyCreator_registrator
: core::init
- HolesFilterCOP
: protocols::simple_filters
- HolesFilterOP
: protocols::simple_filters
- HOOGSTEEN
: core::chemical::rna
- HotspotStubCOP
: protocols::hotspot_hashing
- HotspotStubOP
: protocols::hotspot_hashing
- HotspotStubSetCOP
: protocols::hotspot_hashing
- HotspotStubSetOP
: protocols::hotspot_hashing
- hours_timing
: core::simple_metrics::metrics
- hpatch
: core::scoring
- HPatchEnergyCreator_registrator
: core::init
- HPN_CFr
: protocols::fldsgn::topology
- Hpol_bond_geometry
: core::scoring
- HPool_RMSD_COP
: protocols::canonical_sampling::mc_convergence_checks
- HPool_RMSD_OP
: protocols::canonical_sampling::mc_convergence_checks
- HRF
: core::pose::rna
- hrf_dynamics
: core::scoring
- hrf_ms_labeling
: core::scoring
- HRF_MSLabelingEnergyCreator_registrator
: core::init
- HRFDynamicsEnergyCreator_registrator
: core::init
- Hs
: core::chemical::element
- hs_pair
: core::scoring
- HSPairPotentialOP
: protocols::fldsgn::potentials::sspot
- HSSConstIterator
: protocols::fldsgn::topology
- HSSIterator
: protocols::fldsgn::topology
- HSSTripletCOP
: protocols::fldsgn::topology
- HSSTripletFilterCOP
: protocols::fldsgn::filters
- HSSTripletFilterOP
: protocols::fldsgn::filters
- HSSTripletOP
: protocols::fldsgn::topology
- HSSTriplets
: protocols::fldsgn::topology
- HSSTripletSetCOP
: protocols::fldsgn::topology
- HSSTripletSetOP
: protocols::fldsgn::topology
- HT
: core::scoring::nmr
- HT_ang_U1D2
: protocols::toolbox::match_enzdes_util
- HT_ang_U2D1
: protocols::toolbox::match_enzdes_util
- HT_tor_U1D3
: protocols::toolbox::match_enzdes_util
- HT_tor_U2D2
: protocols::toolbox::match_enzdes_util
- HT_tor_U3D1
: protocols::toolbox::match_enzdes_util
- HTReal
: core::select::util
- hxl_tors
: core::scoring
- HYBRID_FA_STANDARD_CENTROID
: core::chemical
- HYBRID_FA_STANDARD_CENTROID_t
: core::chemical
- HYBRID_MAX
: core::chemical
- hybrid_vdw
: core::scoring
- Hybridization
: core::chemical
- hybridize_subelement_ct_name()
: protocols::hybridization
- HybridizeFoldtreeMoverCOP
: protocols::hybridization
- HybridizeFoldtreeMoverOP
: protocols::hybridization
- HybridizeProtocolCOP
: protocols::hybridization
- HybridizeProtocolOP
: protocols::hybridization
- HybridVDW_EnergyCreator_registrator
: core::init
- hydrate_cavities()
: protocols::hydrate
- hydrate_hyfile()
: protocols::hydrate
- hydrate_magnesiums()
: protocols::magnesium
- HydrateCOP
: protocols::hydrate
- HydrateOP
: protocols::hydrate
- HYDROGEN_RADIUS
: core::scoring::packstat
- HydrogenAtomED
: core::chemical
- HydrogenAtomGraph
: core::chemical
- HydrogenAtomOutEdgeIter
: core::chemical
- HydrogenAtomOutEdgeIterPair
: core::chemical
- HydrogenAtomVD
: core::chemical
- HydrogenAtomVIter
: core::chemical
- HydrogenAtomVIterPair
: core::chemical
- HydrogenBondConstraintGeneratorCOP
: protocols::constraint_generator
- HydrogenBondConstraintGeneratorCOPs
: protocols::constraint_generator
- HydrogenBondConstraintGeneratorOP
: protocols::constraint_generator
- HydrogenBondConstraintGeneratorOPs
: protocols::constraint_generator
- HydrogenBondingAtoms
: protocols::constraint_generator
- HYDROPHOBIC
: core::chemical
- HYDROPHOBIC_SASA
: core::scoring::sasa
- HYDROXYLATION
: core::chemical
- HYDROXYLATION1
: core::chemical
- HYDROXYLATION2
: core::chemical
- HydroxylTorsionEnergyCreator_registrator
: core::init
- HydroxylTorsionEnergyOP
: core::energy_methods
- HydroxylTorsionPotentialCOP
: core::scoring
- HydroxylTorsionPotentialOP
: core::scoring
- HYDROXYPROLINE_EXCEPTIONS
: core::pack::palette