Here is a list of all namespace members with links to the namespace documentation for each member:

- u -

• U : core::chemical::element
• u : protocols::hybridization
• U_TURN : core::scoring::rna
• UA_HANDLE : core::scoring::rna
• ubi_e2c_modeler_COP : protocols::ub_e2c
• ubi_e2c_modelerOP : protocols::ub_e2c
• UBQ_GTPaseMoverCOP : protocols::chemically_conjugated_docking
• UBQ_GTPaseMoverOP : protocols::chemically_conjugated_docking
• ubq_ras_distance() : protocols::chemically_conjugated_docking
• ubq_ras_rotation_angle() : protocols::chemically_conjugated_docking
• UI_OBSERVER : core::pose::datacache
• UIMoverCOP : protocols::network
• UIMoverCSP : protocols::network
• UIMoverOP : protocols::network
• UIMoverSP : protocols::network
• uint : core , protocols::multistage_rosetta_scripts::cluster
• uint16_to_real() : core::scoring::motif
• uint8_to_real() : core::scoring::motif
• UIObserverCOP : protocols::network
• UIObserverCSP : protocols::network
• UIObserverOP : protocols::network
• UIObserverSP : protocols::network
• UltraLightResidueOP : core::conformation
• unassigned_deallocation_msg : protocols::jd3::deallocation
• UnboundRotamersOperationCOP : core::pack::rotamer_set
• UnboundRotamersOperationOP : core::pack::rotamer_set
• unchecked : protocols::hotspot_hashing
• UnconstrainedTorsionsMoverCOP : protocols::ligand_docking
• UnconstrainedTorsionsMoverOP : protocols::ligand_docking
• UNFOLD : protocols::fldsgn::topology
• unfold_complex() : protocols::protein_interface_design::movers
• unfolded : core::scoring
• UNFOLDED_ENERGY_DATA_TAG() : protocols::unfolded_state_energy_calculator
• UNFOLDED_ENERGY_TERMS_TAG() : protocols::unfolded_state_energy_calculator
• UNFOLDED_MM_STD : core::scoring
• UNFOLDED_RNA : core::scoring
• UNFOLDED_SCORE12 : core::scoring
• UNFOLDED_SPLIT_MM_STD : core::scoring
• UNFOLDED_SPLIT_TALARIS2013 : core::scoring
• UNFOLDED_SPLIT_USER_DEFINED : core::scoring
• UnfoldedStateEnergyCalculatorJobDistributorCOP : protocols::unfolded_state_energy_calculator
• UnfoldedStateEnergyCalculatorJobDistributorOP : protocols::unfolded_state_energy_calculator
• UnfoldedStateEnergyCalculatorMoverCOP : protocols::unfolded_state_energy_calculator
• UnfoldedStateEnergyCalculatorMoverOP : protocols::unfolded_state_energy_calculator
• UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributorCOP : protocols::unfolded_state_energy_calculator
• UnfoldedStateEnergyCalculatorMPIWorkPoolJobDistributorOP : protocols::unfolded_state_energy_calculator
• UnfoldedStateEnergyCreator_registrator : core::init
• UnfoldedStateEnergyOP : core::energy_methods
• UnfoldedStatePotentialOP : core::scoring
• Uniform : protocols::ligand_docking
• uniform_dof_distribution() : protocols::simple_moves
• UniformPerturberCOP : protocols::kinematic_closure::perturbers
• UniformPerturberOP : protocols::kinematic_closure::perturbers
• UniformRigidBodyCMCOP : protocols::rigid
• UniformRigidBodyCMOP : protocols::rigid
• UniformRigidBodyMoverCOP : protocols::rigid
• UniformRigidBodyMoverOP : protocols::rigid
• UniformRotationMoverCOP : protocols::simple_moves
• UniformRotationMoverOP : protocols::simple_moves
• UniformSphereTransMoverCOP : protocols::rigid
• UniformSphereTransMoverOP : protocols::rigid
• UniformTranslationMoverCOP : protocols::simple_moves
• UniformTranslationMoverOP : protocols::simple_moves
• union_interval() : protocols::forge::methods
• unique_chars() : protocols::flxbb
• unique_strs() : protocols::flxbb
• universal_main() : protocols::jobdist
• UNK : protocols::frag_picker
• UNKNOW : core::io::pdb
• Unknown : protocols::antibody
• unknown : protocols::antibody
• UNKNOWN : protocols::cluster::calibur , protocols::fldsgn::topology , protocols::jd2::JobInputterInputSource
• unknown_ab_region : protocols::antibody
• unknown_crosslinker : protocols::cyclic_peptide
• unknown_effect : protocols::generalized_kinematic_closure::perturber
• UNKNOWN_EXPDTA : core::io::rcsb
• Unknown_file : core::import_pose
• unknown_filter : protocols::generalized_kinematic_closure::filter
• UNKNOWN_HYBRID : core::chemical
• unknown_ramatable_type : core::scoring
• unknown_selector : protocols::generalized_kinematic_closure::selector
• UnknownAromaticity : core::chemical
• UnknownBond : core::chemical
• UnknownBondOrder : core::chemical
• UnknownConjugability : core::chemical
• UnknownElement : core::chemical::element
• UnknownIsometry : core::chemical
• UnknownRingness : core::chemical
• UNLIKELY_ISC_VALUE : protocols::peptide_deriver
• unpack() : core::scoring::epr_deer
• unpack_ubyte() : core::pack::interaction_graph
• UnrecognizedAtomFeaturesCOP : protocols::features
• UnrecognizedAtomFeaturesOP : protocols::features
• UnsatSelectorCOP : protocols::hbnet
• UnsatSelectorOP : protocols::hbnet
• unset : protocols::hybridization
• UNSET() : protocols::loops::loop_mover
• unset : protocols::pdbinfo_manipulations
• unset_acceptor_ether_oxygens() : core::chemical
• UP : protocols::denovo_design::components
• update_atom_information_based_on_occupancy() : core::io::pose_from_sfr
• update_atom_map() : protocols::hybridization
• update_block_stack_variants() : core::pose
• update_bond_indices() : core::io::mmtf
• update_cached_lkb_resinfo() : core::scoring::lkball
• update_constraint_set_from_full_model_info() : core::pose::full_model_info
• update_cutpoint_virtual_atoms_if_connected() : core::conformation , core::pose
• update_disulfides_from_full_model_info() : core::pose::full_model_info
• update_edge_hbond_numbers() : core::pose::rna
• update_edge_hbond_numbers_careful_hydrogen() : core::pose::rna
• update_fixed_domain_from_extra_minimize_jump_pairs() : core::import_pose
• update_fixed_domain_from_extra_minimize_jump_res() : core::import_pose
• update_full_model_info_from_pose() : core::pose::full_model_info
• update_jump_atoms_for_mg_bound_water() : protocols::magnesium
• update_jump_res() : core::import_pose
• update_map() : core::pose::rna
• update_mg_hoh_fold_tree() : protocols::magnesium
• update_numbers_in_pdb_info() : protocols::magnesium
• update_partner_embeddings() : protocols::membrane
• update_pdb_info() : protocols::environment
• update_pdb_info_from_full_model_info() : core::pose::full_model_info
• update_pose_domain_map() : core::pose::full_model_info
• update_pose_domain_map_const() : core::pose::full_model_info
• update_pose_fold_tree() : core::import_pose
• update_pose_objects_from_full_model_info() : core::pose::full_model_info
• update_res_list_in_full_model_info_and_pdb_info() : core::pose::full_model_info
• update_scores() : protocols::recces
• update_sequence_separation() : protocols::star
• update_template_files() : protocols::tcr
• UpJumpSRFDCOP : core::fragment
• UpJumpSRFDOP : core::fragment
• UPPER_CONNECTION_RNA : core::chemical
• upper_is_symm_equivalent_of_lower() : core::conformation
• UPPER_TERMINUS : core::chemical
• UPPER_TERMINUS_VARIANT : core::chemical
• upper_triangle_offset() : core::pack::guidance_scoreterms::sap
• UPPERTERM_CAP : core::chemical
• UPPERTERM_TRUNC : core::chemical
• UPPERTERM_TRUNC_VARIANT : core::chemical
• UPSILON_ATOM : core::chemical
• upstream_centroid_by_jump() : protocols::geometry
• UpstreamBuilderCOP : protocols::match::upstream
• UpstreamBuilderOP : protocols::match::upstream
• UpstreamCollisionFilterCOP : protocols::match::output
• UpstreamCollisionFilterOP : protocols::match::output
• UpstreamDownstreamCollisionFilterCOP : protocols::match::output
• UpstreamDownstreamCollisionFilterOP : protocols::match::output
• UpstreamHitCacherCOP : protocols::match::output
• UpstreamHitCacherOP : protocols::match::output
• UpstreamResidueProcessorCOP : protocols::match::upstream
• UpstreamResidueProcessorOP : protocols::match::upstream
• UpstreamResTypeGeometryCOP : protocols::match::upstream
• UpstreamResTypeGeometryOP : protocols::match::upstream
• URONIC_ACID : core::chemical
• URONIC_ACID_VARIANT : core::chemical
• use_pose_numbering : protocols::loops
• UseMultiCoolAnnealerCreator_registrator : core::init
• UseMultiCoolAnnealerOP : core::pack::task::operation
• USER_SPECIFIED : protocols::cluster::calibur
• UserDefinedGroupDiscriminatorOP : protocols::minimization_packing
• USOGFuncCOP : core::scoring::func
• USOGFuncOP : core::scoring::func
• utilCOP : core::scoring::loop_graph , protocols::stepwise::legacy::modeler::rna
• utilOP : core::scoring::loop_graph , protocols::stepwise::legacy::modeler::rna
• Uuo : core::chemical::element
• Uup : core::chemical::element
• Uus : core::chemical::element
• Uut : core::chemical::element