Here is a list of all namespace members with links to the namespace documentation for each member:

- w -

• W : core::chemical::element
• WAITING_ON_DEPENDENCIES : protocols::forge::build::BuildInstructionState
• walk_back_to_find_usable_base() : core::chemical
• WalkingBondAnglePerturberCOP : protocols::kinematic_closure::perturbers
• WalkingBondAnglePerturberOP : protocols::kinematic_closure::perturbers
• WalkingPerturberCOP : protocols::kinematic_closure::perturbers
• WalkingPerturberOP : protocols::kinematic_closure::perturbers
• WallpaperGroupSetting : protocols::cryst
• WARN : core::select::residue_selector::slice_enums
• wat_desolv : core::scoring
• wat_entropy : core::scoring
• watchdog_finish() : protocols::boinc::watchdog
• watchdog_start() : protocols::boinc::watchdog
• WATER : core::chemical
• water_specific_hbond_energy() : protocols::hydrate
• WaterAdductHBondEnergyCreator_registrator : core::init
• WaterAdductHBondPotentialCOP : core::scoring
• WaterAdductHBondPotentialOP : core::scoring
• WaterAdductIntraEnergyCreator_registrator : core::init
• WaterAdductIntraEnergyOP : core::energy_methods
• WaterAnchorInfoOP : core::pack::rotamer_set
• WaterBuilderForRestypeCOP : core::scoring::lkball
• WaterBuilderForRestypeOP : core::scoring::lkball
• WaterBuilders : core::scoring::lkball
• WaterBuildersList : core::scoring::lkball
• WaterBuildersListCOP : core::scoring::lkball
• WaterBuildersListOP : core::scoring::lkball
• WaterCoords : core::scoring::lkball
• WaterDerivContributions : core::scoring::lkball
• WaterDerivMatrix : core::scoring::lkball
• WaterDerivVectors : core::scoring::lkball
• WaterFeaturesCOP : protocols::features
• WaterFeaturesOP : protocols::features
• WaterMediatedHbondMetricCOP : core::simple_metrics::per_residue_metrics
• WaterMediatedHbondMetricOP : core::simple_metrics::per_residue_metrics
• WaterPackingInfoOP : core::pack::rotamer_set
• WaterSpecificEnergyCreator_registrator : core::init
• WaterSpecificEnergyOP : core::energy_methods
• WATSON_CRICK : core::chemical::rna
• WatsonCrickRotamerCouplingsOP : protocols::dna
• WC_STACKED_PAIR : core::scoring::rna
• Weight : core::scoring
• weight_func() : core::scoring::packstat
• WeightCoordVector : protocols::nmr
• WeightedFragmentSmoothTrialMoverCOP : protocols::hybridization
• WeightedFragmentSmoothTrialMoverOP : protocols::hybridization
• WeightedFragmentTrialMoverCOP : protocols::hybridization
• WeightedFragmentTrialMoverOP : protocols::hybridization
• weights_and_derivs_for_hbonds() : core::scoring::hbonds
• weights_for_hbonds() : core::scoring::hbonds
• wgCUBIC : protocols::cryst
• wgHEXAGONAL : protocols::cryst
• wgMONOCLINIC : protocols::cryst
• wgNOSETTING : protocols::cryst
• wgTETRAGONAL : protocols::cryst
• WHATEVER : core::scoring::dna
• which_atom_in_hbond : core::scoring::hbonds
• which_component() : core::conformation::symmetry
• which_glycosidic_torsion() : core::pose::carbohydrates
• which_hb_aatm : core::scoring::hbonds
• which_hb_abase : core::scoring::hbonds
• which_hb_abase2 : core::scoring::hbonds
• which_hb_abase_prime : core::scoring::hbonds
• which_hb_datm : core::scoring::hbonds
• which_hb_hatm : core::scoring::hbonds
• which_hb_unassigned : core::scoring::hbonds
• which_last_donor_atm : core::scoring::hbonds
• which_ostream() : protocols::analysis
• WhileMoverCOP : protocols::moves
• WhileMoverOP : protocols::moves
• whole_sc : core::pack::interaction_graph
• whole_whole : core::pack::interaction_graph
• WholeStructureEnergyOP : core::scoring::methods
• WidthFirstSlidingWindowLoopClosureCOP : protocols::loops::loop_closure
• WidthFirstSlidingWindowLoopClosureOP : protocols::loops::loop_closure
• WobbleMoverCOP : protocols::simple_moves
• WobbleMoverOP : protocols::simple_moves
• WORKING : core::pose::full_model_info
• WorkUnit_BatchRelaxCOP : protocols::relax
• WorkUnit_BatchRelaxOP : protocols::relax
• WorkUnit_LoopHashCOP : protocols::loophash
• WorkUnit_LoopHashOP : protocols::loophash
• WorkUnit_MoverWrapperCOP : protocols::wum
• WorkUnit_MoverWrapperOP : protocols::wum
• WorkUnit_SamplerCOP : protocols::mpi_refinement
• WorkUnit_SamplerOP : protocols::mpi_refinement
• WorkUnit_SilentStructStoreCOP : protocols::wum
• WorkUnit_SilentStructStoreOP : protocols::wum
• WorkUnit_WaitCOP : protocols::wum
• WorkUnit_WaitOP : protocols::wum
• WorkUnitBaseCOP : protocols::wum
• WorkUnitBaseOP : protocols::wum
• WorkUnitListCAP : protocols::wum
• WorkUnitManagerCOP : protocols::wum
• WorkUnitManagerOP : protocols::wum
• WrapperOptEMultifuncAP : protocols::optimize_weights
• WrapperOptEMultifuncCAP : protocols::optimize_weights
• WrapperOptEMultifuncCOP : protocols::optimize_weights
• WrapperOptEMultifuncOP : protocols::optimize_weights
• write1() : protocols::cluster
• write_AA_distribution_with_direction_to_a_file() : protocols::features::strand_assembly
• write_AA_distribution_without_direction_to_a_file() : protocols::features::strand_assembly
• write_AA_kind_to_a_file() : protocols::features::strand_assembly
• write_batch_reports_table() : protocols::features
• write_beta_sheet_capping_info_to_a_file() : protocols::features::strand_assembly
• write_binary() : core::io::serialization
• write_binary_chars() : core::io::serialization
• write_bytes() : core::io::serialization
• write_chain_B_resNum_to_a_file() : protocols::features::strand_assembly
• write_checkpoint() : protocols::dna , protocols::rna::movers , protocols::stepwise::monte_carlo::mover
• write_crick_params_file_data() : protocols::helical_bundle
• write_debug_pdb() : protocols::glycopeptide_docking
• write_dot() : core::pack::interaction_graph
• write_features_reporters_table() : protocols::features
• write_graphviz() : core::chemical
• write_hashing_scores_to_file() : protocols::legacy_sewing
• write_heading_direction_of_all_AA_in_a_strand_to_a_file() : protocols::features::strand_assembly
• write_kinemage_header() : core::conformation
• write_ligand_tracer() : protocols::ligand_docking
• write_lines_to_file_if_necessary() : update_ResidueType_enum_files
• write_minor_helix_params() : protocols::helical_bundle
• write_model_file() : protocols::legacy_sewing
• write_motifs_binary() : core::scoring::motif
• write_native_residue_file() : protocols::legacy_sewing
• write_number_of_electrostatic_interactions_of_residues_to_files() : protocols::features::strand_assembly
• write_p_aa_pp_of_AAs_to_a_file() : protocols::features::strand_assembly
• write_phi_psi_of_each_residue_to_a_file() : protocols::features::strand_assembly
• write_rama_of_AAs_to_a_file() : protocols::features::strand_assembly
• write_resfile_to_a_file() : protocols::features::strand_assembly
• write_resfile_to_a_file_when_seq_rec_is_bad() : protocols::features::strand_assembly
• write_score_tracer() : protocols::jd2
• write_sphere_list_farray() : core::pack::interaction_graph
• write_sphere_list_header() : core::pack::interaction_graph
• write_sphere_list_uv1() : core::pack::interaction_graph
• write_to_file() : protocols::simple_filters
• write_topology_file() : core::chemical
• write_xfrag_binary() : core::scoring::motif
• write_xfres_binary() : core::scoring::motif
• WriteDeletePair : protocols::features
• WriteKinemageOutputterCOP : protocols::match::output
• WriteKinemageOutputterOP : protocols::match::output
• WriteLigandMolFileOP : protocols::ligand_docking
• WriteSSEMoverCOP : protocols::simple_moves
• WriteSSEMoverOP : protocols::simple_moves
• WriteToDB_AA_to_terminal_loops() : protocols::features::strand_assembly
• WriteToDB_avg_b_factor_CB_at_each_component() : protocols::features::strand_assembly
• WriteToDB_dihedral_angle_between_core_strands_across_facing_sheets() : protocols::features::strand_assembly
• WriteToDB_dssp_ratio_in_sw() : protocols::features::strand_assembly
• WriteToDB_ending_loop() : protocols::features::strand_assembly
• WriteToDB_hydrophobic_ratio_net_charge() : protocols::features::strand_assembly
• WriteToDB_long_strand_id_in_each_sw() : protocols::features::strand_assembly
• WriteToDB_min_avg_dis_between_sheets_by_cen_res() : protocols::features::strand_assembly
• WriteToDB_min_dis_between_sheets_by_all_res() : protocols::features::strand_assembly
• WriteToDB_number_of_AAs_in_a_pair_of_edge_strands() : protocols::features::strand_assembly
• WriteToDB_number_of_core_heading_aro_AAs_in_a_pair_of_edge_strands() : protocols::features::strand_assembly
• WriteToDB_number_of_core_heading_charged_AAs_in_a_pair_of_edge_strands() : protocols::features::strand_assembly
• WriteToDB_number_of_core_heading_FWY_in_sw() : protocols::features::strand_assembly
• WriteToDB_number_of_core_heading_LWY_in_core_strands_in_sw() : protocols::features::strand_assembly
• WriteToDB_number_of_core_heading_W_in_sw() : protocols::features::strand_assembly
• WriteToDB_number_of_edge_strands_in_each_sw() : protocols::features::strand_assembly
• WriteToDB_number_of_sheets_that_surround_this_sheet() : protocols::features::strand_assembly
• WriteToDB_number_strands_in_each_sw() : protocols::features::strand_assembly
• WriteToDB_prolines_that_seem_to_prevent_aggregation() : protocols::features::strand_assembly
• WriteToDB_ratio_of_core_heading_FWY_in_sw() : protocols::features::strand_assembly
• WriteToDB_rkde() : protocols::features::strand_assembly
• WriteToDB_rkde_in_strands() : protocols::features::strand_assembly
• WriteToDB_sandwich() : protocols::features::strand_assembly
• WriteToDB_sandwich_by_AA_w_direction() : protocols::features::strand_assembly
• WriteToDB_sheet() : protocols::features::strand_assembly
• WriteToDB_sheet_antiparallel() : protocols::features::strand_assembly
• WriteToDB_sheet_connectivity() : protocols::features::strand_assembly
• WriteToDB_sheet_id() : protocols::features::strand_assembly
• WriteToDB_shortest_dis_between_facing_aro_in_sw() : protocols::features::strand_assembly
• WriteToDB_starting_loop() : protocols::features::strand_assembly
• WriteToDB_sw_can_by_sh() : protocols::features::strand_assembly
• WriteToDB_sw_res_size() : protocols::features::strand_assembly
• WriteToDB_topology_candidate() : protocols::features::strand_assembly
• WriteToDB_turn_AA() : protocols::features::strand_assembly
• WriteToDB_turn_type() : protocols::features::strand_assembly
• WriteToDB_whether_sw_is_not_connected_with_continuous_atoms() : protocols::features::strand_assembly
• WriteUpstreamCoordinateKinemageCOP : protocols::match::output
• WriteUpstreamCoordinateKinemageOP : protocols::match::output
• WriteUpstreamHitKinemageCOP : protocols::match::output
• WriteUpstreamHitKinemageOP : protocols::match::output
• ws : core::scoring::methods
• WtedClones : core::conformation::symmetry
• WU_DESC_TEXT_BUFSIZE : protocols::boinc
• WUB_magic_header_integer : protocols::wum
• WUM_MPI_DATA_BLOCK : protocols::wum
• WUM_MPI_end : protocols::wum
• WUM_MPI_REQUEST_WU : protocols::wum
• WUM_MPI_SEND_WU : protocols::wum
• WUM_MPI_SPINDOWN : protocols::wum
• WUM_MPI_TAGS : protocols::wum
• wwPDBJobOutputterOP : protocols::jd2