- d -

• d : Floating_point , W128_T
• d_ : ObjexxFCL::format::Bite< T >
• data : app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceResults , Cache::head_t , fmt::internal::DummyInt
• data_ : basic::database::insert_statement_generator::RowData< T > , basic::datacache::DataCache< Data > , basic::datacache::DiagnosticData , basic::MetricValue< T > , basic::Report , fmt::BasicCStringRef< Char > , fmt::BasicStringRef< Char > , fmt::internal::MemoryBuffer< T, SIZE, Allocator > , numeric::geometry::hashing::SixDOffsetTree , numeric::kdtree::KDPoint , numeric::MathMatrix< T > , numeric::MathNTensor< T > , numeric::MathTensor< T > , numeric::MathVector< T > , utility::list_element< T > , utility::OrderedTuple< T >
• data_column : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• data_creator_map_ : basic::datacache::WriteableCacheableDataFactory
• data_entry : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• data_files : setup.PyRosettaDistribution
• data_label : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• data_map_ : basic::datacache::ConstDataMap , basic::datacache::DataMap , basic::datacache::HierarchicalDataMap
• database : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• database_session_ : basic::database::DatabaseSessionOptions
• database_session_resource_tag_ : basic::resource_manager::locator::DatabaseResourceLocator
• dataMembers : tools.CppParser.CppClass
• db : app.pyrosetta_toolkit.modules.SQLPDB.PDB_database , app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB
• db_mode_ : utility::sql_database::session
• db_name_ : utility::sql_database::session
• db_partition_ : utility::sql_database::session
• db_path : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• db_session_ : DatabaseIOBenchmark
• db_util : app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB
• dctPlan : numeric::fourier::SHT
• ddy_ : numeric::interpolation::spline::SimpleInterpolator
• debug : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.TkConsoleView
• Debug : basic::Tracer
• decoy_entry : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• decoy_label : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• decoys : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• deep_construct : yaml.constructor.BaseConstructor
• default : options_class.Option
• default_buffer_size : boost_adaptbx::python::streambuf
• default_flow_style : yaml.representer.BaseRepresenter
• default_lvalue_reference_return_value_policy_ : binder::Config
• DEFAULT_MAPPING_TAG : yaml.resolver.BaseResolver
• default_pointer_return_value_policy_ : binder::Config
• default_rvalue_reference_return_value_policy_ : binder::Config
• DEFAULT_SCALAR_TAG : yaml.resolver.BaseResolver
• DEFAULT_SEQUENCE_TAG : yaml.resolver.BaseResolver
• default_state_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_style : yaml.representer.BaseRepresenter
• DEFAULT_TAG_PREFIXES : yaml.emitter.Emitter
• DEFAULT_TAGS : yaml.parser.Parser
• default_value_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T > , utility::tag::XMLSchemaAttribute
• defaultDic : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• defaultdir : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• defer_ : basic::database::schema_generator::ForeignKey
• degree : Kernel , svm_parameter
• degree_ : numeric::Polynomial_1d
• delete_contents_at_nread_limit_ : utility::io::FileContentsMap
• delim_label : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• delim_type : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• delta : basic::sampling::orientations::QuatDBMetadata , basic::sampling::orientations::QuaternionGrid
• delta_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline , numeric::interpolation::spline::TricubicSpline
• demangled : tools.CppParser.CppFunction
• dens_score_ : CAtrace
• dens_wt_ : FragmentAssemblyMover
• densities_ : numeric::interpolation::Histogram< typename, typename >
• dependencies_ : binder::ClassBinder
• desc : options_class.Option
• description : setup.PyRosettaDistribution
• description_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T > , utility::tag::XMLSchemaAttribute
• design : pyrosetta.toolbox.generate_resfile.ResfileWriter , toolbox.generate_resfile.ResfileWriter
• design_accessible_sa : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• design_pose : DesignBenchmark
• design_protocols : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• design_relative_mutability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• design_surface_probability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• DesignDic : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window , app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• dest : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• dest_origin_rpath : BuildPackagedBindings.ModuleBuilder
• destructor : tools.CppParser.CppClass
• DicProtocol : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• DIGITS : fmt::internal::BasicData< T >
• dihed_scorefxn_ : zinc1_homodimer_design
• dim_labels_ : numeric::MultiDimensionalHistogram
• dim_p_ : ObjexxFCL::DimensionExpressionRef
• dim_sizes_ : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• dimOther_ : numeric::fourier::kiss_fftndr_state
• dimprod_ : numeric::fourier::kiss_fftnd_state
• dimprods_ : numeric::geometry::hashing::SixDCoordinateBinner
• dimReal_ : numeric::fourier::kiss_fftndr_state
• dims_ : numeric::fourier::kiss_fftnd_state
• dimsizes_ : numeric::geometry::hashing::SixDCoordinateBinner
• disallow_res_ : HDdesignMover
• distance_ : numeric::ClusteringTreeNode , numeric::kdtree::KDPoint
• distance_cutoff_ : numeric::kdtree::KDPointList
• distances_ : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• distclass : setup.PyRosettaDistribution
• distribution_ : numeric::random::DistributionSampler< T >
• disulfide_mm_ : UBQ_GTPase_disulfide_Mover
• disulfide_terms : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• DNA_aliased : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• DNAchains : loadPDB.Protein
• docking : DockingBenchmark< dock, TScale >
• dockMCM : app.surface_docking.movers.FullAtomRelax
• dom : tools.CppParser.ClangXML , tools.CppParser.GccXML
• done : yaml.scanner.Scanner
• double_msg_ : utility::SimulateMPIMessage
• double_value : fmt::internal::Value
• doubles_msg_ : utility::SimulateMPIMessage
• dox_symbols : tools.dox_extract.dox_extract
• dry_run_ : basic::ComparingTracer
• dsecox_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoxy_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoxyz_ : numeric::interpolation::spline::TricubicSpline
• dsecoxz_ : numeric::interpolation::spline::TricubicSpline
• dsecoy_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoyz_ : numeric::interpolation::spline::TricubicSpline
• dsecoz_ : numeric::interpolation::spline::TricubicSpline
• dst_ : utility::SimulateMPIMessage
• dst_2_src_ : utility::subset_mapping
• dy : numeric::interpolation::spline::Point