- i -

• i : Access , Integral
• I1_ : ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• I2_ : ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• I3_ : ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• I4_ : ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• I5_ : ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• I6_ : ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray6D< typename >
• I_ : ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::KeyFArray1D< typename >
• i__not_binded : Arrays
• i_not_binded : Access
• i_protected_not_binded : Access
• i_r : Pointers_and_References
• i_stream_ : utility::io::icstream
• IAM_ : IAMover , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• id : yaml.nodes.MappingNode , yaml.nodes.ScalarNode , yaml.nodes.SequenceNode , yaml.tokens.AliasToken , yaml.tokens.AnchorToken , yaml.tokens.BlockEndToken , yaml.tokens.BlockEntryToken , yaml.tokens.BlockMappingStartToken , yaml.tokens.BlockSequenceStartToken , yaml.tokens.DirectiveToken , yaml.tokens.DocumentEndToken , yaml.tokens.DocumentStartToken , yaml.tokens.FlowEntryToken , yaml.tokens.FlowMappingEndToken , yaml.tokens.FlowMappingStartToken , yaml.tokens.FlowSequenceEndToken , yaml.tokens.FlowSequenceStartToken , yaml.tokens.KeyToken , yaml.tokens.ScalarToken , yaml.tokens.StreamEndToken , yaml.tokens.StreamStartToken , yaml.tokens.TagToken , yaml.tokens.ValueToken
• id_ : numeric::ClusteringTreeNode , ScoreFragInfo , utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C >
• idctPlan : numeric::fourier::SHT
• identifier_ : utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C >
• ids : binder::Context
• idx_ : CAtrace , numeric::kdtree::CompareKDPoints
• if_stream_ : utility::io::izstream
• ifftPlan : numeric::fourier::SHT
• ig_ : InteractionGraphPerformanceBenchmark
• ignore_unrecognized : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• ignore_unrecognized_option_set : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• ii_not_binded : Arrays
• implicit : yaml.events.CollectionStartEvent , yaml.events.ScalarEvent
• in_file_ : ScoreEachBenchmark
• in_list_ : utility::list_element< T >
• in_map_ : basic::Emitter
• include_paths : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• includes_ : binder::IncludeSet
• includes_to_add : binder::Config
• includes_to_skip : binder::Config
• incomplete : tools.CppParser.CppClass
• incomplete_job_sets_ : basic::resource_manager::LazyResourceManager
• indent : yaml.emitter.Emitter , yaml.scanner.Scanner
• indent_ : basic::Emitter
• indent_depth_ : basic::Emitter
• indent_str_ : basic::Emitter
• indentation_level_ : numeric::expression_parser::ASTPrinter , utility::json_spirit::Generator< Value_type, Ostream_type >
• indention : yaml.emitter.Emitter
• indents : yaml.emitter.Emitter , yaml.scanner.Scanner
• index : calccontacts.shellAtom , svm_node , SVR_Q , yaml.error.Mark , yaml.reader.Reader , yaml.scanner.Scanner , yaml.scanner.SimpleKey
• index1 : calccontacts.resContact
• index2 : calccontacts.resContact
• index_ : utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C > , utility::libsvm::Svm_node_rosetta , utility::SimulateMPIMessage
• index_to_vd_ : utility::graph::RingDetection< Graph >
• indices_ : basic::database::schema_generator::Schema
• indir : app.pyrosetta_toolkit.window_main.IO.SessionIO.SessionIO
• inf_value : yaml.constructor.SafeConstructor , yaml.representer.SafeRepresenter
• Info : basic::Tracer
• info : numeric::nls::lm_status_struct
• info_ : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• init_for_input_yet_ : UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• initial_tracers_visibility_calculated_ : basic::Tracer
• initialized_ : ObjexxFCL::Dimension
• initializer_ : ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• inner_cycles : app.surface_docking.movers.CentroidRelax , app.surface_docking.movers.FullAtomRelax
• inner_min_rep : app.surface_docking.movers.FullAtomRelax
• input_class : app.pyrosetta_toolkit.modules.protocols.ProtocolBaseClass.ProtocolBaseClass , app.pyrosetta_toolkit.pyrosetta_toolkit.main_window , app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame , app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow , app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow , app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor , app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• input_files : utility::Inline_File_Provider
• input_frame : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window
• input_sc : pyrosetta.toolbox.generate_resfile.ResfileWriter , toolbox.generate_resfile.ResfileWriter
• insert_ : sidechain_cst_3.Residue
• insert_button : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• insert_chain : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• insert_cter_flex : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• insert_end : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• insert_load_button : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• insert_loop_end : APDBCMover
• insert_loop_start : APDBCMover
• insert_nter_flex : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• insert_point : APDBCMover
• insert_start : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• insertion_operators : binder::Context
• insertion_order_ : basic::resource_manager::JobOptions
• instance_ : basic::resource_manager::ResourceLoaderFactory , basic::TracerManager , utility::SingletonBase< T > , utility::sql_database::DatabaseSessionManager
• int_value : fmt::internal::Value
• int_value_ : utility::py::Base
• integer_ : ObjexxFCL::DimensionExpressionCon
• integer_msg_ : utility::SimulateMPIMessage
• integer_options_ : basic::resource_manager::JobOptions
• integer_vector_options_ : basic::resource_manager::JobOptions
• integer_vectors_ : utility::options::OptionCollection
• integers_ : utility::options::OptionCollection
• integers_msg_ : utility::SimulateMPIMessage
• intercept : numeric::interpolation::spline::LinearFunction
• interface_analyzer_ : zinc1_homodimer_design , zinc2_homodimer_setup
• interface_scorable_tree_ : zinc1_homodimer_design
• InterfaceNeighborDefinition_ : HDdesignMover
• InterfaceSasaDefinition_ : UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• interp : numeric::interpolation::spline::interp_range
• interpolator_ : numeric::interpolation::Histogram< typename, typename > , numeric::interpolation::spline::SplineGenerator
• interpolators_ : numeric::interpolation::spline::CompoundInterpolator
• interrupt : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IPythonView
• intvar_settings : app.pyrosetta_toolkit.window_main.IO.SessionIO.SessionIO
• inverse_ : numeric::fourier::kiss_fft_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state
• IONS_aliased : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• ios_saver_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• IP : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IterableIPShell
• ip_not_binded : Pointers_and_References
• ipka_ : PhProtocol
• iref : FitMover
• is_a_blank_line : tools.dox_extract.dox_extract
• is_a_function : tools.dox_extract.dox_extract
• is_group_ : utility::options::Option
• is_literal_ : numeric::expression_parser::ArithmeticASTValue
• is_option_group : options_class.Option
• is_required_ : utility::tag::XMLSchemaAttribute
• is_sformat_initialized : numeric::random::mt19937_RG
• iseed_ : numeric::random::mt19937_RG
• isHbond : calccontacts.atom_contact
• it_ : utility::DereferenceIterator< Container >
• item_ : numeric::random::WeightedReservoirItem< T >
• iter_more : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IterableIPShell
• iters_ : utility::json_spirit::Stream_reader< Istream_type, Value_type > , utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >