- o -

• o : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.TkConsoleView
• o_stream_ : utility::io::ocstream
• obj : basic::datacache::DataMapObj< Ty > , Solver::SolutionInfo
• object_ : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• object_keeper : yaml.representer.BaseRepresenter
• Objects : tools.CppParser.GccXML
• observer_p_ : ObjexxFCL::ObserverSingle
• observers_p_ : ObjexxFCL::ObserverMulti
• occupancy_1 : app.pyrosetta_toolkit.modules.SQLPDB.PDB_database
• of_stream_ : utility::io::ozstream
• off_by_default_aa : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• offset_tree_ : numeric::geometry::hashing::SixDCoordinateBinner
• old_pose_ : PhProtocol
• oldName : options_class.Option
• OmeVar : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• on_by_default_aa : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• open_mode_ : basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator
• operator : tools.CppParser.CppFunction
• operator_to_py_fn : tools.CppParser.CppFunction
• OperatorToCppNameMap : tools.CppParser.CppFunction
• option_menu_basic : app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
• option_menu_rmsd : app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
• option_p_ : utility::options::VariantOption< O >
• optionmenu_method : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• OPTIONS : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• options : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl , BuildPackagedBindings.ModuleBuilder
• options_manager : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• options_menu : app.pyrosetta_toolkit.window_main.menu.Menus
• optionSP : app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL
• opts : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager , options.KeepSameFile
• ord : numeric::kinematic_closure::p
• os_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• ostrstream_ : numeric::expression_parser::ASTPrinter
• otsream_ : basic::basic_otstream< CharT, Traits >::basic_tstringbuf< _CharT, _Traits >
• out : AnchorFinderMover
• out_ : basic::Emitter
• out_path_ : supercharge
• outcopy : AnchorFinderMover
• outDIR : app.pyrosetta_toolkit.modules.SQLPDB.PDB_database
• outdir : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput , app.pyrosetta_toolkit.window_main.IO.SessionIO.SessionIO
• outer_cycle : app.surface_docking.movers.FullAtomRelax
• outer_cycles : app.surface_docking.movers.CentroidRelax , app.surface_docking.movers.FullAtomRelax
• outfont : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window
• outname : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• outpath : app.pyrosetta_toolkit.window_main.menu.Menus
• output : app.pyrosetta_toolkit.modules.calibur.calibur , basic::ExecutionResult
• output_class : app.pyrosetta_toolkit.modules.protocols.ProtocolBaseClass.ProtocolBaseClass , app.pyrosetta_toolkit.pyrosetta_toolkit.main_window , app.pyrosetta_toolkit.window_main.frames.OutputFrame.OutputFrame , app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• output_directory : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• output_files : utility::Inline_File_Provider
• output_frame : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window
• output_tag_ : zinc1_homodimer_design
• output_tag_base_ : zinc1_homodimer_design
• outputname_ : supercharge
• overlap2b : FragmentAssemblyMover
• overlap_width_ : ScoreFragmentSetMover
• overlap_wt_ : FragmentAssemblyMover
• overwrite : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• owner_ : ObjexxFCL::CArrayP< typename > , ObjexxFCL::FArray< typename >