Here is a list of all namespace members with links to the namespace documentation for each member:

- d -

• D : core::id
• d2h_sa : core::scoring
• D2H_SA_EnergyCreator_registrator : core::init
• d2r() : core::scoring::electron_density , core::scoring::electron_density_atomwise
• dab_sasa : core::scoring
• dab_sev : core::scoring
• DatabaseOccSolEneCOP : core::scoring::geometric_solvation
• DatabaseOccSolEneOP : core::scoring::geometric_solvation
• Db : core::chemical::element
• dc : core::scoring
• DDPlookupCOP : core::scoring::interface_
• DDPlookupOP : core::scoring::interface_
• DDPscoreCreator_registrator : core::init
• debug : core::pack::interaction_graph
• debug_dump_rotamers() : core::pack::rotamer_set
• debug_inaccurateG : core::optimization::symmetry
• DebuggingAnnealerOP : core::pack::annealer
• DecoyStructOP : core::io::raw_data
• default_jump_atom() : core::chemical::rna
• default_stub : core::kinematics
• define_mainchain_atoms() : core::chemical
• delete_all_intragroup_edges() : core::graph
• delete_comment() : core::pose
• DELETE_PREVIOUS_ROTAMER : core::pack::rotamer_set
• DELETE_ROTAMER : core::pack::rotamer_set
• dellinte_dm() : core::scoring::rna::chemical_shift
• dellintk_dm() : core::scoring::rna::chemical_shift
• DELTA : core::chemical::rna , core::scoring::dna
• delta_magnetic_anisotropy() : core::scoring::rna::chemical_shift
• delta_ring_current() : core::scoring::rna::chemical_shift
• delta_ring_current_term() : core::scoring::rna::chemical_shift
• DenseEnergyContainerOP : core::scoring
• DenseNeighborIteratorOP : core::scoring
• DensePDInteractionGraphCOP : core::pack::interaction_graph
• DensePDInteractionGraphOP : core::pack::interaction_graph
• DerivedSequenceMappingCOP : core::sequence
• DerivedSequenceMappingOP : core::sequence
• determine_crossover_behavior() : core::scoring::methods
• dexponential() : core::scoring::constraints
• DFIRE : core::scoring , core::scoring::methods
• DFIRE_EnergyCreator_registrator : core::init
• dgaussian() : core::scoring::constraints
• diagonal : core::sequence
• dihedral_atom_set : core::chemical
• dihedral_bin() : core::scoring::dna
• dihedral_constraint : core::scoring
• DihedralConstraintCOP : core::scoring::constraints
• DihedralConstraintCreator_registrator : core::init
• DihedralConstraintOP : core::scoring::constraints
• DihedralPairConstraintCreator_registrator : core::init
• DihedralSet : core::pack::rotamer_set
• dimer_pairing_pointer_sorter() : core::scoring
• DimerPairingOP : core::scoring
• DipolarCouplingCOP : core::scoring
• DipolarCouplingEnergyCreator_registrator : core::init
• DipolarCouplingEnergyOP : core::scoring::methods
• DipolarCouplingOP : core::scoring
• dir_jump : core::kinematics
• DirectReadoutEnergyCreator_registrator : core::init
• DirectReadoutPotentialCOP : core::scoring::dna
• DirectReadoutPotentialOP : core::scoring::dna
• DisallowIfNonnativeCreator_registrator : core::init
• DisallowIfNonnativeOP : core::pack::task::operation
• DisallowIfNonnativeRLTCreator_registrator : core::init
• DisallowIfNonnativeRLTOP : core::pack::task::operation
• Distance : core
• distance() : core::kinematics , core::kinematics::tree
• distance_chainbreak : core::scoring
• distance_squared() : core::kinematics::tree
• DistanceChainbreakEnergyCreator_registrator : core::init
• DistanceFuncAP : core::scoring::custom_pair_distance
• DistanceFuncCAP : core::scoring::custom_pair_distance
• DistanceFuncCOP : core::scoring::custom_pair_distance
• DistanceFuncOP : core::scoring::custom_pair_distance
• DistanceHistogramCOP : core::scoring::saxs
• DistanceHistogramOP : core::scoring::saxs
• DistanceSquared : core
• DISULFIDE : core::pose::full_model_info
• disulfide_bonds() : core::conformation
• disulfide_matching_energy : core::scoring::methods
• DisulfideDerivativeAtom : core::scoring::disulfides
• DisulfideMatchingEnergyContainerAP : core::scoring::disulfides
• DisulfideMatchingEnergyContainerCAP : core::scoring::disulfides
• DisulfideMatchingEnergyContainerCOP : core::scoring::disulfides
• DisulfideMatchingEnergyContainerOP : core::scoring::disulfides
• DisulfideMatchingEnergyCOP : core::scoring::disulfides
• DisulfideMatchingEnergyCreator_registrator : core::init
• DisulfideMatchingEnergyOP : core::scoring::disulfides
• DisulfideMatchingPotentialAP : core::scoring::disulfides
• DisulfideMatchingPotentialCAP : core::scoring::disulfides
• DisulfideMatchingPotentialCOP : core::scoring::disulfides
• DisulfideMatchingPotentialOP : core::scoring::disulfides
• DisulfMinDataCOP : core::scoring::disulfides
• DisulfMinDataOP : core::scoring::disulfides
• DMS : core::scoring::rna::data
• dna_base_distance : core::scoring
• DNA_BaseEnergyCreator_registrator : core::init
• DNA_BasePotentialCOP : core::scoring::dna
• DNA_BasePotentialOP : core::scoring::dna
• dna_bb_torsion : core::scoring
• dna_bp : core::scoring
• dna_bs : core::scoring
• dna_chi : core::scoring
• dna_deriv_atom() : core::scoring::methods
• dna_dr : core::scoring
• DNA_INT_WTS : core::scoring
• DNA_INT_WTS_GB() : core::scoring
• dna_sugar_close : core::scoring
• DNABFormPotentialCOP : core::scoring::dna
• DNABFormPotentialOP : core::scoring::dna
• DNAChiEnergyCreator_registrator : core::init
• DNATorsionEnergyCOP : core::scoring::dna
• DNATorsionEnergyCreator_registrator : core::init
• DNATorsionEnergyOP : core::scoring::dna
• do_not_edit_warning() : update_ResidueType_enum_files
• DOCK_DOMAIN : core::pose::full_model_info
• dock_ens_conf : core::scoring
• DOCK_LOW_PATCH : core::scoring
• DOCK_PATCH : core::scoring
• DockingScoreFunctionCOP : core::scoring
• DockingScoreFunctionOP : core::scoring
• dof_constraint : core::scoring
• DOF_ConstraintCOP : core::scoring::constraints
• DOF_ConstraintCOPs : core::scoring::constraints
• DOF_ConstraintOP : core::scoring::constraints
• DOF_ConstraintOPs : core::scoring::constraints
• DOF_ID : core::optimization::symmetry
• DOF_ID_Mask : core::id
• DOF_Node_sorter() : core::optimization , core::optimization::symmetry
• DOF_NodeCOP : core::optimization
• DOF_NodeOP : core::optimization
• dof_type : core::conformation::symmetry
• DOF_Type : core::id
• DOF_type_is_rb() : core::id
• DofPassportCOP : core::environment
• DofPassportOP : core::environment
• DomainMap : core::kinematics
• DOT : core::scoring::sc
• DoubleBond : core::chemical
• DoubleBondOrder : core::chemical
• DoubleDensePDInteractionGraphCOP : core::pack::interaction_graph
• DoubleDensePDInteractionGraphOP : core::pack::interaction_graph
• DoubleLazyInteractionGraphCOP : core::pack::interaction_graph
• DoubleLazyInteractionGraphOP : core::pack::interaction_graph
• DownJumpSRFDCOP : core::fragment
• DownJumpSRFDOP : core::fragment
• Doxygen_info() : update_ResidueType_enum_files
• drop_constraints() : core::scoring::constraints
• dround() : core::scoring::rna::chemical_shift
• Ds : core::chemical::element
• dslf_ca_dih : core::scoring
• dslf_cbs_ds : core::scoring
• dslf_cs_ang : core::scoring
• dslf_fa13 : core::scoring
• dslf_ss_dih : core::scoring
• dslf_ss_dst : core::scoring
• dslfc_ang : core::scoring
• dslfc_bb_dih : core::scoring
• dslfc_cb_dih : core::scoring
• dslfc_cb_dst : core::scoring
• dslfc_cen_dst : core::scoring
• dslfc_rot : core::scoring
• dslfc_RT : core::scoring
• dslfc_trans : core::scoring
• DUMMY_BOOL : core::scoring::hbonds
• DUMMY_DERIV : core::scoring::hbonds
• dummy_deriv_vector_ : core::scoring::geometric_solvation
• DUMMY_DERIVS : core::scoring::hbonds
• DUMMY_HBE : core::scoring::hbonds
• DUMMY_HBGEODIMTYPE() : core::scoring::hbonds
• dummy_nodeop : core::pack::scmin
• dummy_score_type : core::scoring
• DUMMY_VECTOR : core::scoring::carbon_hbonds
• dump_atom_tree_diff() : core::import_pose::atom_tree_diffs
• dump_bfactor_pdb() : core::io::pdb
• dump_comment_pdb() : core::pose
• dump_connect_info() : core::io::pdb
• dump_frames_as_pdb() : core::fragment
• dump_graph() : core::chemical::sdf
• dump_gws() : core::io::carbohydrates
• dump_gws_chain() : core::io::carbohydrates
• dump_library() : core::pack::dunbrack
• dump_pdb() : core::io::pdb
• dump_pdb_residue() : core::io::pdb
• dump_reference_pose() : core::import_pose::atom_tree_diffs
• dump_score_line() : core::import_pose::atom_tree_diffs
• dunbrack_constraint : core::scoring
• DUNBRACK_MAX_BBTOR : core::pack::dunbrack
• DUNBRACK_MAX_SCTOR : core::pack::dunbrack
• dunbrack_method : core::scoring::methods
• DunbrackConstraintCOP : core::pack::dunbrack
• DunbrackConstraintCreator_registrator : core::init
• DunbrackConstraintOP : core::pack::dunbrack
• DunbrackEnergyCreator_registrator : core::init
• DunbrackReal : core::pack::dunbrack
• dup_residue() : core::pack::dunbrack , core::pack::rotamer_set
• Dy : core::chemical::element