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2015.02
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Here is a list of all namespace members with links to the namespace documentation for each member:
- f -
F :
core::chemical::element
fa_atr :
core::scoring
fa_atr_dummy :
core::scoring
fa_cust_pair_dist :
core::scoring
fa_custom_pair_dist_data :
core::scoring
fa_disulfide_energy :
core::scoring::methods
fa_dslf_respair_data :
core::scoring
fa_dun :
core::scoring
fa_dun_dev :
core::scoring
fa_dun_rot :
core::scoring
fa_dun_semi :
core::scoring
fa_elec :
core::scoring
fa_elec_aro_all :
core::scoring
fa_elec_aro_aro :
core::scoring
fa_elec_bb_bb :
core::scoring
fa_elec_bb_sc :
core::scoring
fa_elec_rna_base_base :
core::scoring
fa_elec_rna_base_base_fast :
core::scoring
fa_elec_rna_phos_base :
core::scoring
fa_elec_rna_phos_base_fast :
core::scoring
fa_elec_rna_phos_phos :
core::scoring
fa_elec_rna_phos_phos_fast :
core::scoring
fa_elec_rna_phos_sugr :
core::scoring
fa_elec_rna_phos_sugr_fast :
core::scoring
fa_elec_rna_sugr_base :
core::scoring
fa_elec_rna_sugr_base_fast :
core::scoring
fa_elec_rna_sugr_sugr :
core::scoring
fa_elec_rna_sugr_sugr_fast :
core::scoring
fa_elec_sc_sc :
core::scoring
FA_ElecEnergyAroAllCreator_registrator :
core::init
FA_ElecEnergyAroAroCreator_registrator :
core::init
FA_ElecEnergyCOP :
core::scoring::elec
FA_ElecEnergyCreator_registrator :
core::init
FA_ElecEnergyOP :
core::scoring::elec
fa_grpelec :
core::scoring
FA_GrpElecEnergyCOP :
core::scoring::elec
FA_GrpElecEnergyCreator_registrator :
core::init
FA_GrpElecEnergyOP :
core::scoring::elec
fa_intra_atr :
core::scoring
fa_intra_atr_xover4 :
core::scoring
fa_intra_rep :
core::scoring
fa_intra_rep_xover4 :
core::scoring
fa_intra_RNA_base_phos_atr :
core::scoring
fa_intra_RNA_base_phos_rep :
core::scoring
fa_intra_RNA_base_phos_sol :
core::scoring
fa_intra_sol :
core::scoring
fa_intra_sol_xover4 :
core::scoring
fa_mbenv :
core::scoring
Fa_MbenvEnergyCreator_registrator :
core::init
Fa_MbenvEnergyOP :
core::scoring::methods
fa_mbsolv :
core::scoring
Fa_MbsolvEnergyCreator_registrator :
core::init
fa_pair :
core::scoring
fa_pair_aro_aro :
core::scoring
fa_pair_aro_pol :
core::scoring
fa_pair_pol_pol :
core::scoring
fa_plane :
core::scoring
fa_rep :
core::scoring
fa_rep_dummy :
core::scoring
FA_REP_SCORE :
core::conformation::symmetry
FA_RNA :
core::chemical
fa_sol :
core::scoring
fa_sol_dummy :
core::scoring
fa_stack :
core::scoring
fa_stack_aro :
core::scoring
fa_stack_lower :
core::scoring
FA_STACK_NBLIST :
core::scoring::EnergiesCacheableDataType
fa_stack_upper :
core::scoring
FA_STANDARD :
core::chemical
FA_STANDARD_DEFAULT :
core::scoring
FA_STANDARD_SOFT :
core::scoring
FabConstraintCOP :
core::scoring::constraints
FabConstraintCreator_registrator :
core::init
FabConstraintOP :
core::scoring::constraints
factorsLTE19() :
core::scoring::electron_density
factorsLTE5() :
core::scoring::electron_density
facts_elec :
core::scoring
FACTS_ROTAMER_SET_INFO :
core::conformation::RotamerSetCacheableDataType
facts_sasa :
core::scoring
facts_solv :
core::scoring
FACTSEnergyCreator_registrator :
core::init
FACTSPoseInfoOP :
core::scoring
FACTSPotentialOP :
core::scoring
FACTSResidueInfoOP :
core::scoring
FACTSRotamerSetInfoOP :
core::scoring
FACTSRsdTypeInfoCOP :
core::scoring
FACTSRsdTypeInfoOP :
core::scoring
FACTSRsdTypeMap :
core::scoring
fade_energy() :
core::scoring::hbonds
FadeFuncCOP :
core::scoring::func
FadeFuncOP :
core::scoring::func
FadeIntervalCOP :
core::scoring::hbonds
FadeIntervalOP :
core::scoring::hbonds
FAElecContextDataCOP :
core::scoring::elec
FAElecContextDataOP :
core::scoring::elec
FaMPEnv :
core::scoring
FaMPEnvEnergyCOP :
core::scoring::membrane
FaMPEnvEnergyCreator_registrator :
core::init
FaMPEnvEnergyOP :
core::scoring::membrane
FaMPEnvSmooth :
core::scoring
FaMPEnvSmoothEnergyCOP :
core::scoring::membrane
FaMPEnvSMoothEnergyCreator_registrator :
core::init
FaMPEnvSmoothEnergyOP :
core::scoring::membrane
FaMPSolv :
core::scoring
FaMPSolvEnergyCOP :
core::scoring::membrane
FaMPSolvEnergyCreator_registrator :
core::init
FaMPSolvEnergyOP :
core::scoring::membrane
FArray1D_Energy :
core::scoring
FArray1D_Length :
core::scoring
FArray1D_Probability :
core::scoring
FArray1D_Real :
core::scoring::dna
FArray1D_TableEnergy :
core::scoring
FArray1D_TableProbability :
core::scoring
FArray1D_Weight :
core::scoring
FArray2D_Energy :
core::scoring
FArray2D_Length :
core::scoring
FArray2D_Probability :
core::scoring
FArray2D_TableEnergy :
core::scoring
FArray2D_TableProbability :
core::scoring
FArray2D_Weight :
core::scoring
FArray3D_Energy :
core::scoring
FArray3D_Length :
core::scoring
FArray3D_Probability :
core::scoring
FArray3D_TableEnergy :
core::scoring
FArray3D_TableProbability :
core::scoring
FArray3D_Weight :
core::scoring
FArray4D_Energy :
core::scoring
FArray4D_Length :
core::scoring
FArray4D_Probability :
core::scoring
FArray4D_TableEnergy :
core::scoring
FArray4D_TableProbability :
core::scoring
FArray4D_Weight :
core::scoring
FArray5D_Energy :
core::scoring
FArray5D_Length :
core::scoring
FArray5D_Probability :
core::scoring
FArray5D_TableEnergy :
core::scoring
FArray5D_TableProbability :
core::scoring
FArray5D_Weight :
core::scoring
FastDensEnergyCreator_registrator :
core::init
FASTERAnnealerCOP :
core::pack::annealer
FASTERAnnealerOP :
core::pack::annealer
FASTERInteractionGraphCOP :
core::pack::interaction_graph
FASTERInteractionGraphOP :
core::pack::interaction_graph
fastexp() :
core::scoring
fastlog2() :
core::scoring
fastpow() :
core::scoring
fastpow2() :
core::scoring
fastsaxs :
core::scoring
FastSAXSEnergyCreator_registrator :
core::init
Fe :
core::chemical::element
figure_out_base_pair_orientation() :
core::pose::rna
figure_out_chain_numbers_from_full_model_info() :
core::pose::full_model_info
figure_out_chain_numbers_from_full_model_info_const() :
core::pose::full_model_info
figure_out_conventional_chains_from_full_model_info() :
core::pose::full_model_info
figure_out_dock_domain_map_from_full_model_info_const() :
core::pose::full_model_info
figure_out_number_base_contacts() :
core::pose::rna
figure_out_pose_domain_map() :
core::pose::full_model_info
figure_out_pose_domain_map_const() :
core::pose::full_model_info
figure_out_reasonable_rna_fold_tree() :
core::pose::rna
figure_out_repackable_residues() :
core::pack
file_is_atom_tree_diff() :
core::import_pose::atom_tree_diffs
FileDataOptionsCOP :
core::io::pdb
FileDataOptionsOP :
core::io::pdb
FileName :
core::import_pose::pose_stream
filenames_from_list_file() :
core::import_pose::pose_stream
fill_atom_derivs_for_acceptor() :
core::scoring::geometric_solvation
fill_atom_derivs_for_donor() :
core::scoring::geometric_solvation
fill_bb_pos() :
core::scoring
fill_chi_rotamers_with_center_and_stddev() :
core::pack::rotamer_set
fill_hbond_bb_pair_score_dssp() :
core::scoring::dssp
fill_hbond_set() :
core::scoring::hbonds
fill_hbond_set_by_AHdist_threshold() :
core::scoring::hbonds
fill_ideal_xyz_from_icoor() :
core::chemical
fill_in_chain_terminii() :
core::pack::task::operation::util
fill_intra_res_hbond_set() :
core::scoring::hbonds
fill_name_map() :
core::io::pdb
fill_rmsd_coordinates() :
core::scoring
fill_score_range() :
core::scoring
fill_template_frames_from_pdb() :
core::fragment
fill_xform_score_from_file() :
core::scoring::motif
filter_chem_shift_data_list() :
core::scoring::rna::chemical_shift
filter_motifs() :
core::scoring::motif
find_basepairs() :
core::scoring::dna
find_bonds_in_rings() :
core::chemical
find_chi_bonds() :
core::chemical
find_connected_components() :
core::graph
find_cutpoint_variants() :
core::scoring::methods
find_interface_pointing_residues_from_neighbs() :
core::pack::task::operation::util
find_jump_partners_within_CB_cutoff() :
core::pack::task::operation::util
find_metalbinding_atoms() :
core::util
find_nbr_dist() :
core::chemical
find_neighbors() :
core::conformation
find_neighbors_3dgrid() :
core::conformation
find_neighbors_3dgrid_restricted() :
core::conformation
find_neighbors_naive() :
core::conformation
find_neighbors_naive_restricted() :
core::conformation
find_neighbors_naive_surface() :
core::conformation
find_neighbors_octree() :
core::conformation
find_neighbors_octree_restricted() :
core::conformation
find_neighbors_restricted() :
core::conformation
find_neighbors_stripe() :
core::conformation
find_neighbors_within_CB_cutoff() :
core::pack::task::operation::util
find_new_symmetric_jump_residues() :
core::pose::symmetry
find_residue_max_radii() :
core::pack
find_seqpos_of_saccharides_parent_residue() :
core::pose::carbohydrates
find_stub_transform() :
core::kinematics
find_symmetric_basejump_anchor() :
core::pose::symmetry
find_weights_file() :
core::scoring
FindBoundaries() :
core::fragment
findSampling() :
core::scoring::electron_density
findSampling5() :
core::scoring::electron_density
first_base_atom() :
core::chemical::rna
first_base_atom_index() :
core::chemical::rna
first_beta3_aa :
core::chemical
first_D_aa :
core::chemical
first_DNA_aa :
core::chemical
fix_bfactorsH() :
core::scoring::cryst
fix_bfactorsMissing() :
core::scoring::cryst
fix_sugar_coords() :
core::pose::rna
fix_sugar_coords_WORKS_BUT_SLOW() :
core::pose::rna
FixbbRotamerSetsCOP :
core::pack::rotamer_set
FixbbRotamerSetsOP :
core::pack::rotamer_set
FixbbSimAnnealerOP :
core::pack::annealer
FIXED_DOMAIN :
core::pose::full_model_info
FixedBBInteractionGraphCOP :
core::pack::interaction_graph
FixedBBInteractionGraphOP :
core::pack::interaction_graph
fixup_patches() :
core::chemical
fixup_rinfo_based_on_residue_type_set() :
core::io::pdb
Fl :
core::chemical::element
FlatHarmonicFuncCOP :
core::scoring::func
FlatHarmonicFuncOP :
core::scoring::func
flatten_list() :
core::fragment
flip_atom_xyz() :
core::io::pdb
float20 :
core::scoring::motif
float9 :
core::scoring::motif
FloatCIter :
core::scoring::packstat
FloatIter :
core::scoring::packstat
Floats :
core::scoring::motif
,
core::scoring::packstat
Fm :
core::chemical::element
fold_tree_entry_point() :
core::conformation::symmetry
FoldTreeAP :
core::kinematics
FoldTreeCAP :
core::kinematics
FoldTreeCOP :
core::kinematics
FoldTreeOP :
core::kinematics
FoldTreeSketchCOP :
core::environment
FoldTreeSketchOP :
core::environment
form_disulfide() :
core::conformation
formatted_icoord_tree() :
core::chemical
FormFactorCOP :
core::scoring::saxs
FormFactorManagerCOP :
core::scoring::saxs
FormFactorManagerOP :
core::scoring::saxs
FormFactorOP :
core::scoring::saxs
FOUR :
core::pack::dunbrack
FourPointsFuncCOP :
core::scoring::func
FourPointsFuncOP :
core::scoring::func
Fr :
core::chemical::element
FragDataCOP :
core::fragment
FragDataCOPs :
core::fragment
FragDataOP :
core::fragment
FragDataOPs :
core::fragment
FragID_List :
core::fragment
fragment_set_slice() :
core::fragment
FragmentLookupAP :
core::indexed_structure_store
FragmentLookupCAP :
core::indexed_structure_store
FragmentLookupCOP :
core::indexed_structure_store
FragmentLookupOP :
core::indexed_structure_store
FragmentRmsdCOP :
core::fragment
FragmentRmsdOP :
core::fragment
FragmentStoreCOP :
core::indexed_structure_store
FragmentStoreOP :
core::indexed_structure_store
FragSetCollectionCOP :
core::fragment
FragSetCollectionOP :
core::fragment
FragSetCOP :
core::fragment
FragSetOP :
core::fragment
FrameCOP :
core::fragment
FrameIteratorWorker_OP :
core::fragment
FrameOP :
core::fragment
frdc() :
core::scoring
frdcDa() :
core::scoring
frdcDaR() :
core::scoring
frdcR() :
core::scoring
free_2HOprime :
core::scoring
free_base :
core::scoring
free_dof :
core::scoring
free_res :
core::scoring
free_side_chain :
core::scoring
free_suite :
core::scoring
FreeDOF_EnergyCreator_registrator :
core::init
FreeDOF_OptionsCOP :
core::scoring::methods
FreeDOF_OptionsOP :
core::scoring::methods
full_model_info_defined() :
core::pose::full_model_info
full_model_parameter_type_from_string() :
core::pose::full_model_info
full_model_parameter_type_name :
core::pose::full_model_info
full_model_size() :
core::pose::full_model_info
full_to_sub() :
core::pose::full_model_info
FullatomCustomPairDistanceEnergyCOP :
core::scoring::custom_pair_distance
FullatomCustomPairDistanceEnergyCreator_registrator :
core::init
FullatomCustomPairDistanceEnergyOP :
core::scoring::custom_pair_distance
FullatomDisulfideEnergyContainerAP :
core::scoring::disulfides
FullatomDisulfideEnergyContainerCAP :
core::scoring::disulfides
FullatomDisulfideEnergyContainerCOP :
core::scoring::disulfides
FullatomDisulfideEnergyContainerOP :
core::scoring::disulfides
FullatomDisulfideEnergyCOP :
core::scoring::disulfides
FullatomDisulfideEnergyCreator_registrator :
core::init
FullatomDisulfideEnergyOP :
core::scoring::disulfides
FullatomDisulfidePotentialAP :
core::scoring::disulfides
FullatomDisulfidePotentialCAP :
core::scoring::disulfides
FullatomDisulfidePotentialCOP :
core::scoring::disulfides
FullatomDisulfidePotentialOP :
core::scoring::disulfides
FullModelInfoOP :
core::pose::full_model_info
FullModelParametersCOP :
core::pose::full_model_info
FullModelParametersOP :
core::pose::full_model_info
FullModelParameterType :
core::pose::full_model_info
FuncCOP :
core::scoring::func
FuncOP :
core::scoring::func
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