Here is a list of all namespace members with links to the namespace documentation for each member:

- i -

• I : core::chemical::element
• IdealBondLengthSetAP : core::chemical
• IdealBondLengthSetCAP : core::chemical
• IdealBondLengthSetCOP : core::chemical
• IdealBondLengthSetOP : core::chemical
• idealize_hydrogens() : core::conformation
• idealize_position() : core::conformation
• IdealParametersDatabaseAP : core::scoring::methods
• IdealParametersDatabaseCAP : core::scoring::methods
• IdealParametersDatabaseCOP : core::scoring::methods
• IdealParametersDatabaseOP : core::scoring::methods
• identify_hbonds_1way() : core::scoring::hbonds
• identify_hbonds_1way_AHdist() : core::scoring::hbonds
• identify_hbonds_1way_membrane() : core::scoring::hbonds
• identify_intra_res_hbonds() : core::scoring::hbonds
• IdentityEvalAP : core::fragment::picking_old::vall::eval
• IdentityEvalCAP : core::fragment::picking_old::vall::eval
• IdentityEvalCOP : core::fragment::picking_old::vall::eval
• IdentityEvalOP : core::fragment::picking_old::vall::eval
• IdentityFuncCOP : core::scoring::func
• IdentityFuncOP : core::scoring::func
• IGEdgeReweightContainerCOP : core::pack::task
• IGEdgeReweightContainerOP : core::pack::task
• IGEdgeReweighterCOP : core::pack::task
• IGEdgeReweighterOP : core::pack::task
• ImportPoseOptionsCOP : core::import_pose
• ImportPoseOptionsCreator_registrator : core::init
• ImportPoseOptionsOP : core::import_pose
• In : core::chemical::element
• IncludeCurrentCreator_registrator : core::init
• IncludeCurrentOP : core::pack::task::operation
• increase_rotamer_precision() : core::pack::dunbrack
• IndependentBBTorsionSRFD_AP : core::fragment
• IndependentBBTorsionSRFD_CAP : core::fragment
• IndependentBBTorsionSRFD_COP : core::fragment
• IndependentBBTorsionSRFD_OP : core::fragment
• INFINITE_SEPARATION() : core::scoring::etable::count_pair
• init() : core::init
• init_beta_correction() : core::init
• init_complex_options() : core::init
• init_correct_correction() : core::init
• init_crystal_refinement_correction() : core::init
• init_dna_correction() : core::init
• init_facts_correction() : core::init
• init_hbond_sp2_correction() : core::init
• init_mpi() : core::init
• init_nonideal_correction() : core::init
• init_normalizing_area_sc() : core::scoring
• init_normalizing_area_total() : core::scoring
• init_options() : core::init
• init_packing_score_discrim() : core::scoring::packstat
• init_packing_score_respred() : core::scoring::packstat
• init_paths() : core::init
• init_profiling() : core::init
• init_random_generators() : core::init
• init_random_number_generators() : core::init
• init_restore_score12prime() : core::init
• init_revert_to_pre_talaris_2013_mistake() : core::init
• init_score_function_corrections() : core::init
• init_source_revision() : core::init
• init_tracers() : core::init
• InitialAntiCausalCoefficient() : core::scoring::electron_density::SplineInterp
• InitialCausalCoefficient() : core::scoring::electron_density::SplineInterp
• initialize_atomid_map() : core::pose
• initialize_AtomID_Map() : core::scoring::packing
• initialize_atomid_map_AtomID() : core::pose
• initialize_atomid_map_heavy_only() : core::pose
• initialize_atoms_for_which_we_need_new_dofs() : core::pose::rna
• initialize_cpdata_for_atom() : core::scoring::trie
• initialize_disulfide_bonds() : core::pose
• initialize_dof_id_map() : core::pose
• initialize_energies() : core::scoring
• initialize_full_model_parameter_type_name() : core::pose::full_model_info
• initialize_hbs() : core::pose::ncbb
• initialize_ncbbs() : core::pose::ncbb
• initialize_oops() : core::pose::ncbb
• initialize_parameters() : core::pose::full_model_info
• initialize_tag_is_done() : core::io::silent
• initialize_temperatures() : core::pack
• initialize_temperatures_off_rotamer_pack() : core::pack
• InitializeExtraRotsFromCommandlineCreator_registrator : core::init
• InitializeExtraRotsFromCommandlineOP : core::pack::task::operation
• InitializeFromCommandlineCreator_registrator : core::init
• InitializeFromCommandlineOP : core::pack::task::operation
• inline_intraresidue_atom_pair_energy() : core::scoring
• inline_residue_atom_pair_energy() : core::scoring
• inline_residue_atom_pair_energy_backbone_backbone() : core::scoring
• inline_residue_atom_pair_energy_sidechain_backbone() : core::scoring
• inline_residue_atom_pair_energy_sidechain_sidechain() : core::scoring
• inline_residue_atom_pair_energy_sidechain_whole() : core::scoring
• INPUT_DOMAIN : core::pose::full_model_info
• input_legrand_sasa_dats() : core::scoring::sasa
• input_sasa_dats() : core::scoring , core::scoring::packstat::old
• inputPipeMap() : core::io::serialization
• insert() : core::io::serialization
• insert_ideal_bonds_at_polymer_junction() : core::conformation
• insert_ideal_mainchain_bonds() : core::conformation
• insert_residue_into_atom_tree() : core::conformation
• InsertMap : core::fragment
• InsertSize : core::fragment
• InteractionGraphBaseCOP : core::pack::interaction_graph
• InteractionGraphBaseOP : core::pack::interaction_graph
• interchain_contact : core::scoring
• interchain_env : core::scoring
• interchain_pair : core::scoring
• interchain_vdw : core::scoring
• interface_dd_pair : core::scoring
• InterfacePair : core::pack::task::operation::util
• InterGroupInterfaceByVectorSelectorCOP : core::pack::task::residue_selector
• InterGroupInterfaceByVectorSelectorOP : core::pack::task::residue_selector
• intermol : core::scoring
• IntermolEnergyCreator_registrator : core::init
• interp3() : core::scoring::electron_density::SplineInterp
• interp4() : core::scoring::electron_density::SplineInterp
• interp_dspline() : core::scoring::electron_density
• interp_linear() : core::scoring::electron_density
• interp_spline() : core::scoring::electron_density
• interpolate_rotamers() : core::pack::dunbrack
• interpolate_value_and_deriv() : core::scoring
• intracomponent_contact() : core::pose::symmetry
• Ints : core::scoring::motif
• INVALID() : core::scoring::methods::dfire
• inverse_rt6() : core::scoring::motif
• invert_exclude_residues() : core::scoring
• InvRotamerDotsCOP : core::pack::interaction_graph
• InvRotamerDotsOP : core::pack::interaction_graph
• iprod() : core::scoring
• Ir : core::chemical::element
• is_aromatic() : core::scoring::constraints
• is_base_2() : core::scoring::elec
• is_base_phosphate_atom_pair() : core::chemical::rna
• is_canonical_D_aa() : core::chemical
• is_cutpoint_closed_atom() : core::pose::rna
• is_cutpoint_closed_by_atom_name() : core::pose::rna
• is_cutpoint_closed_torsion() : core::pose::rna
• is_cutpoint_open() : core::pose::rna
• is_disulfide_bond() : core::conformation
• is_heavyatom() : core::scoring
• is_ideal_pose() : core::pose
• is_ideal_position() : core::conformation , core::pose
• is_jump_intracomponent() : core::conformation::symmetry
• is_ligand_heavyatom() : core::scoring
• is_ligand_heavyatom_residues() : core::scoring
• is_lower_cutpoint() : core::scoring::methods
• is_missing_density() : core::scoring::electron_density
• is_multicomponent() : core::pose::symmetry
• is_NA() : core::io::pdb
• is_nbr_atom() : core::scoring
• is_non_peptide_heavy_atom() : core::scoring
• is_old_RNA() : core::io::pdb
• is_orthonormal() : core::scoring::dna
• is_phosphate_2() : core::scoring::elec
• is_polar_hydrogen() : core::scoring::rna::chemical_shift
• is_polymer_heavyatom() : core::scoring
• is_position_conserved_residue() : core::pose
• is_potential_old_DNA() : core::io::pdb
• is_protein_backbone() : core::scoring
• is_protein_backbone_including_O() : core::scoring
• is_protein_CA() : core::scoring
• is_protein_CA_or_CB() : core::scoring
• is_protein_sidechain_heavyatom() : core::scoring
• is_pseudoresidue() : core::io::serialization
• is_purine() : core::chemical::rna
• is_residue_type_recognized() : core::io::pdb
• is_rna_chainbreak() : core::pose::rna
• is_rot_sample_name() : core::pack::task
• is_scatom() : core::scoring
• is_singlecomponent() : core::pose::symmetry
• is_sp2_proton_chi() : core::chemical
• is_sugar_2() : core::scoring::elec
• is_symmetric() : core::conformation::symmetry , core::pose::symmetry
• is_torsion_valid() : core::pose::rna
• is_upper_cutpoint() : core::scoring::methods
• IsAromaticBond : core::chemical
• ISECT : core::scoring::packstat