Here is a list of all namespace members with links to the namespace documentation for each member:

- r -

• R : core::scoring
• Ra : core::chemical::element
• rama : core::scoring
• rama2b : core::scoring
• rama2b_lr : core::scoring::methods
• rama2b_offset : core::scoring
• Rama2BOffsetCOP : core::scoring
• Rama2BOffsetEnergyAP : core::scoring::methods
• Rama2BOffsetEnergyCAP : core::scoring::methods
• Rama2BOffsetEnergyCOP : core::scoring::methods
• Rama2BOffsetEnergyOP : core::scoring::methods
• Rama2BOffsetOP : core::scoring
• Rama2BOffsetTables : core::scoring
• Ramac2BOffsetEnergyCreator_registrator : core::init
• Ramachandran2BCOP : core::scoring
• Ramachandran2BOP : core::scoring
• ramachandran_method : core::scoring::methods
• RamachandranCOP : core::scoring
• RamachandranEnergy2BCOP : core::scoring::methods
• RamachandranEnergy2BCreator_registrator : core::init
• RamachandranEnergy2BOP : core::scoring::methods
• RamachandranEnergyCOP : core::scoring::methods
• RamachandranEnergyCreator_registrator : core::init
• RamachandranEnergyOP : core::scoring::methods
• RamachandranOP : core::scoring
• rand_rot() : core::scoring::packstat
• RANDOM : core::conformation::symmetry
• random_delay() : core::init
• random_rotation() : core::scoring::motif
• Range : core::fragment
• RawStructOP : core::io::raw_data
• Rb : core::chemical::element
• RB1 : core::id
• RB2 : core::id
• RB3 : core::id
• RB4 : core::id
• RB5 : core::id
• RB6 : core::id
• rcl1 : core::scoring::rna::chemical_shift
• rcl2 : core::scoring::rna::chemical_shift
• rcl3 : core::scoring::rna::chemical_shift
• RDAT_VERSION_NUM_STRING : core::io::rna
• RDATCOP : core::io::rna
• RDATOP : core::io::rna
• rdc : core::scoring
• rdc_rohl : core::scoring
• rdc_segments : core::scoring
• Re : core::chemical::element
• read_additional_pdb_data() : core::import_pose
• read_alignment_file() : core::sequence
• read_all_alignments() : core::sequence
• read_all_poses() : core::import_pose
• read_aln() : core::sequence
• read_binary() : core::io::serialization
• read_bytes() : core::io::serialization
• read_codes_and_roots_from_database_file() : core::chemical::carbohydrates
• read_comment_pdb() : core::pose
• read_conformers_from_database_file_for_ring_size() : core::chemical
• read_ddg_predictions_file() : core::io::PositionDdGInfo
• read_DNA_rotlib() : core::pack::rotamer_set
• read_dunbrack_library() : core::pack::dunbrack
• read_fasta_file() : core::sequence
• read_fasta_file_return_str() : core::sequence
• read_fasta_file_str() : core::sequence
• read_general_aln() : core::sequence
• read_general_aln_file() : core::sequence
• read_grishin_aln_file() : core::sequence
• read_lines_from_file() : update_ResidueType_enum_files
• read_motifs_binary() : core::scoring::motif
• read_pairing_list() : core::scoring::dssp
• read_properties_from_database_file() : core::chemical::carbohydrates
• read_psipred_ss2_file() : core::pose
• read_std_frags_from_cmd() : core::fragment
• read_stoopid() : core::scoring::packstat
• read_topology_file() : core::chemical
• read_xfrag_binary() : core::scoring::motif
• read_xfres_binary() : core::scoring::motif
• ReadResfileAndObeyLengthEventsCreator_registrator : core::init
• ReadResfileAndObeyLengthEventsOP : core::pack::task::operation
• ReadResfileCreator_registrator : core::init
• ReadResfileOP : core::pack::task::operation
• readValueOrDie() : core::scoring::func
• Real : core
• Real3 : core::pack::dunbrack
• Real4 : core::pack::dunbrack
• real6_to_rt() : core::scoring::motif
• real_to_uint16() : core::scoring::motif
• real_to_uint8() : core::scoring::motif
• RealArrayPoolCOP : core::graph
• RealArrayPoolOP : core::graph
• RealCIter : core::scoring::packstat
• RealIter : core::scoring::packstat
• RealResidueAdjacentIter : core::chemical
• RealResidueAdjacentIterPair : core::chemical
• RealResidueED : core::chemical
• RealResidueEIter : core::chemical
• RealResidueGraph : core::chemical
• RealResidueOutEdgeIter : core::chemical
• RealResidueOutEdgeIterPair : core::chemical
• RealResidueVD : core::chemical
• RealResidueVIter : core::chemical
• RealResidueVIterPair : core::chemical
• Reals : core::scoring::motif , core::scoring::packstat
• rebuild_disulfide() : core::util
• recenter() : core::conformation::symmetry
• Record : core::io::pdb
• RecordRef : core::io::pdb
• reduce : core::scoring::sasa
• ref : core::scoring
• ref_nc : core::scoring
• ref_spectrum : core::scoring::saxs
• reference_e_method : core::scoring::methods
• ReferenceEnergyCOP : core::scoring::methods
• ReferenceEnergyCreator_registrator : core::init
• ReferenceEnergyNoncanonicalCOP : core::scoring::methods
• ReferenceEnergyNoncanonicalCreator_registrator : core::init
• ReferenceEnergyNoncanonicalOP : core::scoring::methods
• ReferenceEnergyOP : core::scoring::methods
• RefTag : core::import_pose::atom_tree_diffs
• RefTags : core::import_pose::atom_tree_diffs
• reg_AndResidueSelectorCreator : core::init
• reg_ChainSelectorCreator : core::init
• reg_ClashBasedRepackShellSelectorCreator : core::init
• reg_InterGroupInterfaceByVectorSelectorCreator : core::init
• reg_JumpDownstreamSelectorCreator : core::init
• reg_JumpUpstreamSelectorCreator : core::init
• reg_NeighborhoodResidueSelectorCreator : core::init
• reg_NotResidueSelectorCreator : core::init
• reg_NumNeighborsSelectorCreator : core::init
• reg_OrResidueSelectorCreator : core::init
• reg_ResidueIndexSelectorCreator : core::init
• regenerate_graph_vertex_index() : core::chemical
• reinitialize_mingraph_neighborhood_for_residue() : core::pack
• remap_cis_omega_torsion_bins_to_trans() : core::conformation
• remap_names_on_geometry() : core::io::pdb
• RemarksOP : core::pose
• remodel_fold_tree_to_account_for_insertion() : core::kinematics
• remove_constraint_from_residue_constraints() : core::scoring::constraints
• remove_constraints_of_type() : core::scoring::constraints
• remove_cutpoint_variants() : core::util
• remove_ligand_canonical_residues() : core::pose
• remove_lower_terminus_type_from_conformation_residue() : core::conformation
• remove_lower_terminus_type_from_pose_residue() : core::pose
• remove_nonbb_constraints() : core::scoring::constraints
• remove_nonprotein_residues() : core::pose
• remove_upper_terminus_type_from_conformation_residue() : core::conformation
• remove_upper_terminus_type_from_pose_residue() : core::pose
• remove_variant_type_from_conformation_residue() : core::conformation
• remove_variant_type_from_pose_residue() : core::pose
• remove_variant_type_from_residue() : core::pose
• remove_virtual_residues() : core::pose
• remove_virtual_rna_residue_variant_type() : core::pose::rna
• remove_whitespaces() : core::scoring::rna::chemical_shift
• rename_atoms() : core::chemical
• renumber_pdbinfo_based_on_conf_chains() : core::pose
• reorder_full_model_info_after_append() : core::pose::full_model_info
• reorder_full_model_info_after_delete() : core::pose::full_model_info
• reorder_full_model_info_after_prepend() : core::pose::full_model_info
• reorder_moving_res_list_after_delete() : core::pose::full_model_info
• reorder_moving_res_list_after_insert() : core::pose::full_model_info
• reorder_res_list_after_append() : core::pose::full_model_info
• reorder_res_list_after_delete() : core::pose::full_model_info
• reorder_res_list_after_prepend() : core::pose::full_model_info
• repackable_residues() : core::pack
• repackable_residues_dup() : core::pack
• replace_conformation_residue_copying_existing_coordinates() : core::conformation
• replace_pose_residue_copying_existing_coordinates() : core::pose
• replace_residue_in_atom_tree() : core::conformation
• replace_substr() : core::kinematics
• replaced_symmetric_foldtree_with_new_monomer() : core::conformation::symmetry
• ReplicateTaskAP : core::pack::task::operation
• ReplicateTaskCAP : core::pack::task::operation
• ReplicateTaskCOP : core::pack::task::operation
• ReplicateTaskCreator_registrator : core::init
• ReplicateTaskOP : core::pack::task::operation
• report_application_command() : core::init
• REQUEST_SYMMETRIZE_BY_INTERSECTION : core::pack::task
• REQUEST_SYMMETRIZE_BY_UNION : core::pack::task
• requires_CB_mapping() : core::scoring::constraints
• reroot_restype() : core::chemical
• res1_pointed_at_res2() : core::pack::task::operation::util
• res_type_constraint : core::scoring
• res_type_linking_constraint : core::scoring
• resample() : core::scoring::electron_density
• ResElecGroup : core::scoring::elec
• ResfileCommandCOP : core::pack::task
• ResfileCommandOP : core::pack::task
• ResfileContentsCOP : core::pack::task
• ResfileContentsOP : core::pack::task
• ResFilterCOP : core::pack::task::operation
• ResFilterCreatorCOP : core::pack::task::operation
• ResFilterCreatorOP : core::pack::task::operation
• ResFilterFactoryCOP : core::pack::task::operation
• ResFilterFactoryOP : core::pack::task::operation
• ResFilterOP : core::pack::task::operation
• ResidualDipolarCoupling_RohlCOP : core::scoring
• ResidualDipolarCoupling_RohlOP : core::scoring
• ResidualDipolarCouplingCOP : core::scoring
• ResidualDipolarCouplingEnergy_RohlCreator_registrator : core::init
• ResidualDipolarCouplingEnergyCreator_registrator : core::init
• ResidualDipolarCouplingEnergyOP : core::scoring::methods
• ResidualDipolarCouplingEnergyRigidSegmentsOP : core::scoring::methods
• ResidualDipolarCouplingOP : core::scoring
• residue_center_of_mass() : core::conformation::symmetry , core::pose
• residue_fast_pair_energy_attached_H() : core::scoring
• residue_gws_string() : core::io::carbohydrates
• residue_is_bulge() : core::pose::rna
• residue_point_graph_from_conformation() : core::conformation
• residue_range_gws_string() : core::io::carbohydrates
• residue_sc_rmsd_no_super() : core::scoring
• residue_selector_single_from_line() : core::chemical
• residue_type_all_patches_name() : core::chemical
• residue_type_base_name() : core::chemical
• residue_types_from_saccharide_sequence() : core::pose
• residue_types_from_sequence() : core::pose
• ResidueAP : core::conformation
• ResidueAtomTreeCollectionCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoOP : core::pack::scmin
• ResidueAtomTreeCollectionOP : core::pack::scmin
• ResidueCAP : core::conformation
• ResidueCAPs : core::conformation
• ResidueCartBondedParametersAP : core::scoring::methods
• ResidueCartBondedParametersCAP : core::scoring::methods
• ResidueCartBondedParametersCOP : core::scoring::methods
• ResidueCartBondedParametersOP : core::scoring::methods
• ResidueConstraintsCOP : core::scoring::constraints
• ResidueConstraintsOP : core::scoring::constraints
• ResidueCoordinateChangeListOP : core::kinematics
• ResidueCOP : core::conformation
• ResidueCOPs : core::conformation
• ResidueGraph : core::chemical
• ResidueHasPropertyCreator_registrator : core::init
• ResidueHasPropertyOP : core::pack::task::operation
• ResidueIndexIsCreator_registrator : core::init
• ResidueIndexIsntCreator_registrator : core::init
• ResidueIndexIsntOP : core::pack::task::operation
• ResidueIndexIsOP : core::pack::task::operation
• ResidueIndexList : core::kinematics
• ResidueIndexSelectorCOP : core::pack::task::residue_selector
• ResidueIndexSelectorOP : core::pack::task::residue_selector
• ResidueKinWriterCOP : core::conformation
• ResidueKinWriterOP : core::conformation
• ResidueLacksPropertyCreator_registrator : core::init
• ResidueLacksPropertyOP : core::pack::task::operation
• ResidueListIterator : core::kinematics
• ResidueLoaderCreator_registrator : core::init
• ResidueMatcherCOP : core::conformation
• ResidueMatcherOP : core::conformation
• ResidueName3IsCreator_registrator : core::init
• ResidueName3IsntCreator_registrator : core::init
• ResidueName3IsntOP : core::pack::task::operation
• ResidueName3IsOP : core::pack::task::operation
• ResidueNblistDataCOP : core::scoring
• ResidueNblistDataOP : core::scoring
• ResidueNeighborConstIteratorCOP : core::scoring
• ResidueNeighborConstIteratorOP : core::scoring
• ResidueNeighborIteratorCOP : core::scoring
• ResidueNeighborIteratorOP : core::scoring
• ResidueOP : core::conformation
• ResidueOPs : core::conformation
• ResiduePairEvalType : core::pack::interaction_graph
• ResiduePairNeighborListCOP : core::scoring
• ResiduePairNeighborListOP : core::scoring
• ResiduePDBIndexIsCreator_registrator : core::init
• ResiduePDBIndexIsntCreator_registrator : core::init
• ResiduePDBIndexIsntOP : core::pack::task::operation
• ResiduePDBIndexIsOP : core::pack::task::operation
• ResiduePDBInfoHasLabelCreator_registrator : core::init
• ResiduePDBInfoHasLabelOP : core::pack::task::operation
• ResiduePropertiesCOP : core::chemical
• ResiduePropertiesOP : core::chemical
• residues_interact() : core::scoring::methods
• ResidueSelection : core::scoring
• ResidueSelectionVector : core::scoring
• ResidueSelectorAP : core::pack::task::residue_selector
• ResidueSelectorCAP : core::pack::task::residue_selector
• ResidueSelectorCOP : core::pack::task::residue_selector
• ResidueSelectorCreatorCOP : core::pack::task::residue_selector
• ResidueSelectorCreatorOP : core::pack::task::residue_selector
• ResidueSelectorOP : core::chemical , core::pack::task::residue_selector
• ResidueSelectorSingleOP : core::chemical
• ResidueSubset : core::pack::task::residue_selector
• ResidueTypeAP : core::chemical
• ResidueTypeCAP : core::chemical
• ResidueTypeCAPs : core::chemical
• ResidueTypeConstraintCOP : core::scoring::constraints
• ResidueTypeConstraintOP : core::scoring::constraints
• ResidueTypeCOP : core::chemical
• ResidueTypeCOPs : core::chemical
• ResidueTypeKinWriterCOP : core::chemical
• ResidueTypeKinWriterOP : core::chemical
• ResidueTypeLinkingConstraintCOP : core::scoring::constraints
• ResidueTypeLinkingConstraintOP : core::scoring::constraints
• ResidueTypeOP : core::chemical
• ResidueTypeOPs : core::chemical
• ResidueTypeResFilterCreator_registrator : core::init
• ResidueTypeSetCAP : core::chemical
• ResidueTypeSetCOP : core::chemical
• ResidueTypeSetOP : core::chemical
• ResiudeLoaderOptionsCreator_registrator : core::init
• ResLvlTaskOperationCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorOP : core::pack::task::operation
• ResLvlTaskOperationFactoryCOP : core::pack::task::operation
• ResLvlTaskOperationFactoryOP : core::pack::task::operation
• ResLvlTaskOperationOP : core::pack::task::operation
• ResMap : core::pose
• RespairInteractionsCOP : core::scoring::custom_pair_distance
• RespairInteractionsOP : core::scoring::custom_pair_distance
• ResPairMinimizationDataCOP : core::scoring
• ResPairMinimizationDataOP : core::scoring
• ResPairMotifPtrs : core::scoring::motif
• ResPairMotifsMap : core::scoring::motif
• ResPairMotifsStringMap : core::scoring::motif
• ResSingleMinimizationDataCOP : core::scoring
• ResSingleMinimizationDataOP : core::scoring
• restore_sc12_settings : core::init
• restrict_prec() : core::io::pdb
• RestrictAbsentCanonicalAASCreator_registrator : core::init
• RestrictAbsentCanonicalAASOP : core::pack::task::operation
• RestrictAbsentCanonicalAASRLTCreator_registrator : core::init
• RestrictAbsentCanonicalAASRLTOP : core::pack::task::operation
• RestrictResidueToRepackingCreator_registrator : core::init
• RestrictResidueToRepackingOP : core::pack::task::operation
• RestrictToRepackingCreator_registrator : core::init
• RestrictToRepackingOP : core::pack::task::operation
• RestrictToRepackingRLTCreator_registrator : core::init
• RestrictToRepackingRLTOP : core::pack::task::operation
• RestrictYSDesignCreator_registrator : core::init
• RestrictYSDesignOP : core::pack::task::operation
• RESULTS : core::scoring::sc
• retain_top() : core::fragment
• retrieve_base_partner_from_pose() : core::scoring::dna
• retrieve_base_partner_from_pose_inline() : core::scoring::methods
• retrieve_const_ss_info_from_pose() : core::scoring
• retrieve_coordinates() : core::scoring
• retrieve_CSA_from_pose() : core::scoring
• retrieve_DC_from_pose() : core::scoring
• retrieve_lkb_pairdata() : core::scoring::methods
• retrieve_lkb_resdata() : core::scoring::methods
• retrieve_lkb_resdata_ptr() : core::scoring::methods
• retrieve_lkb_residue_info() : core::scoring::methods
• retrieve_lkb_rotamer_set_info() : core::scoring::methods
• retrieve_nonconst_lkb_pairdata() : core::scoring::methods
• retrieve_nonconst_lkb_resdata() : core::scoring::methods
• retrieve_nonconst_lkb_residue_info() : core::scoring::methods
• retrieve_nonconst_ss_info_from_pose() : core::scoring
• retrieve_RDC_from_pose() : core::scoring
• retrieve_RDC_ROHL_from_pose() : core::scoring
• return_nearest_residue() : core::conformation::symmetry , core::pose
• retype_is_aromatic() : core::chemical
• revert_to_pre_talaris_2013_defaults() : core::init
• Rf : core::chemical::element
• Rg : core::chemical::element
• rg : core::scoring
• RG_Energy_FastCreator_registrator : core::init
• RG_Energy_RNACreator_registrator : core::init
• rg_local : core::scoring
• RG_Local_MinDataOP : core::scoring::methods
• RG_LocalEnergyCreator_registrator : core::init
• RG_MinDataOP : core::scoring::methods
• Rh : core::chemical::element
• RigidBodySilentStructCreator_registrator : core::init
• ring_current_effect() : core::scoring::rna::chemical_shift
• ring_current_effect_individual_ring() : core::scoring::rna::chemical_shift
• RING_HYBRID : core::chemical
• ring_pos() : core::scoring::rna::chemical_shift
• RingConformerSetCOP : core::chemical
• RingConformerSetOP : core::chemical
• RM_BB : core::scoring::motif
• RM_PH : core::scoring::motif
• RM_PO : core::scoring::motif
• RM_SC : core::scoring::motif
• RM_Type : core::scoring::motif
• RM_Type_NONE : core::scoring::motif
• rms : core::scoring
• rms_at_all_corresponding_atoms() : core::scoring
• rms_at_corresponding_atoms() : core::scoring
• rms_at_corresponding_atoms_no_super() : core::scoring
• rms_at_corresponding_heavy_atoms() : core::scoring
• RMS_EnergyCreator_registrator : core::init
• rms_error_with_noise() : core::import_pose::atom_tree_diffs
• rmsd_no_super() : core::scoring
• rmsd_no_super_subset() : core::scoring
• rmsd_with_super() : core::scoring
• rmsd_with_super_subset() : core::scoring
• Rn : core::chemical::element
• RNA_AtomVDWCOP : core::scoring::rna
• RNA_AtomVDWOP : core::scoring::rna
• rna_backbone_backbone : core::scoring
• rna_base_axis : core::scoring
• rna_base_axis_pairwise : core::scoring
• rna_base_backbone : core::scoring
• rna_base_pair : core::scoring
• rna_base_pair_pairwise : core::scoring
• rna_base_stack : core::scoring
• rna_base_stack_axis : core::scoring
• rna_base_stack_axis_pairwise : core::scoring
• rna_base_stack_pairwise : core::scoring
• rna_base_stagger : core::scoring
• rna_base_stagger_pairwise : core::scoring
• rna_bond_geometry : core::scoring
• RNA_BULGE : core::pose::full_model_info
• rna_bulge : core::scoring
• RNA_BulgeEnergyCreator_registrator : core::init
• RNA_CentroidInfoOP : core::scoring::rna
• rna_chem_map : core::scoring
• rna_chem_map_lores : core::scoring
• rna_chem_shift : core::scoring
• RNA_ChemicalMappingEnergyCOP : core::scoring::rna::data
• RNA_ChemicalMappingEnergyCreator_registrator : core::init
• RNA_ChemicalMappingEnergyOP : core::scoring::rna::data
• RNA_Data : core::scoring::rna::data
• rna_data_backbone : core::scoring
• rna_data_base : core::scoring
• RNA_DataBackboneEnergyCreator_registrator : core::init
• RNA_DataInfoAP : core::scoring::rna::data
• RNA_DataInfoOP : core::scoring::rna::data
• RNA_DataReaderOP : core::io::rna
• RNA_DMS_LowResolutionPotentialCOP : core::scoring::rna::data
• RNA_DMS_LowResolutionPotentialOP : core::scoring::rna::data
• RNA_DMS_PotentialCOP : core::scoring::rna::data
• RNA_DMS_PotentialOP : core::scoring::rna::data
• RNA_EnergyMethodOptionsCOP : core::scoring::rna
• RNA_EnergyMethodOptionsOP : core::scoring::rna
• rna_fa_atr_base : core::scoring
• RNA_FA_ElecEnergyCreator_registrator : core::init
• rna_fa_rep_base : core::scoring
• RNA_FilteredBaseBaseInfoOP : core::scoring::rna
• RNA_FittedTorsionInfoOP : core::chemical::rna
• RNA_FullAtomStackingEnergyCreator_registrator : core::init
• RNA_FullAtomVDW_BasePhosphateCOP : core::scoring::rna
• RNA_FullAtomVDW_BasePhosphateCreator_registrator : core::init
• RNA_FullAtomVDW_BasePhosphateOP : core::scoring::rna
• RNA_HIRES_WTS() : core::scoring
• RNA_IdealCoordOP : core::pose::rna
• rna_jr_suite : core::scoring
• RNA_JR_SuiteEnergyCreator_registrator : core::init
• RNA_LJ_BaseEnergyCreator_registrator : core::init
• RNA_LORES_PLUS_HIRES_WTS : core::scoring
• RNA_LORES_WTS : core::scoring
• RNA_LowResolutionPotentialOP : core::scoring::rna
• rna_mg : core::scoring
• RNA_Mg_EnergyCreator_registrator : core::init
• rna_mg_indirect : core::scoring
• RNA_Mg_KnowledgeBasedPotentialCOP : core::scoring::rna
• RNA_Mg_KnowledgeBasedPotentialOP : core::scoring::rna
• rna_mg_rep : core::scoring
• RNA_NORTH_SUGAR : core::pose::full_model_info
• RNA_PairwiseLowResolutionEnergyCreator_registrator : core::init
• RNA_RawBaseBaseInfoAP : core::scoring::rna
• RNA_RawBaseBaseInfoOP : core::scoring::rna
• RNA_Reactivities : core::scoring::rna::data
• RNA_ReactivityAP : core::scoring::rna::data
• RNA_ReactivityOP : core::scoring::rna::data
• RNA_ReactivityType : core::scoring::rna::data
• rna_repulsive : core::scoring
• rna_residue_name_to_num() : core::scoring::rna
• RNA_ResidueLevelTaskCOP : core::pack::task::rna
• RNA_ResidueLevelTaskOP : core::pack::task::rna
• RNA_ResidueTypeAP : core::chemical::rna
• RNA_ResidueTypeCAP : core::chemical::rna
• RNA_ResidueTypeCOP : core::chemical::rna
• RNA_ResidueTypeOP : core::chemical::rna
• rna_rg : core::scoring
• rna_scoring_info_from_pose() : core::scoring::rna
• RNA_ScoringInfoOP : core::scoring::rna
• RNA_SilentStructCreator_registrator : core::init
• RNA_SilentStructOP : core::io::silent
• RNA_SOUTH_SUGAR : core::pose::full_model_info
• rna_sugar_close : core::scoring
• RNA_SugarCloseEnergyCOP : core::scoring::rna
• RNA_SugarCloseEnergyCreator_registrator : core::init
• RNA_SugarCloseEnergyOP : core::scoring::rna
• rna_suite : core::scoring
• rna_suite_lr : core::scoring::methods
• RNA_SuiteEnergyCreator_registrator : core::init
• RNA_SuiteNameOP : core::pose::rna
• RNA_SuitePotentialCOP : core::scoring::rna
• RNA_SuitePotentialOP : core::scoring::rna
• RNA_SYN_CHI : core::pose::full_model_info
• RNA_TERMINAL : core::pose::full_model_info
• RNA_Torsion : core::chemical::rna
• rna_torsion : core::scoring
• rna_torsion_sc : core::scoring
• RNA_TorsionEnergyCOP : core::scoring::rna
• RNA_TorsionEnergyCreator_registrator : core::init
• RNA_TorsionEnergyOP : core::scoring::rna
• RNA_TorsionPotentialCOP : core::scoring::rna
• RNA_TorsionPotentialOP : core::scoring::rna
• rna_vdw : core::scoring
• RNA_VDW_EnergyCreator_registrator : core::init
• rosetta_recharge_fullatom() : core::chemical
• rosetta_retype_fullatom() : core::chemical
• Rot : core::scoring::packstat
• rot_sample_from_name() : core::pack::task
• rotamer_from_chi() : core::pack::dunbrack
• rotamer_from_chi_02() : core::pack::dunbrack
• rotamer_trials() : core::pack
• RotamerAssigningAnnealerOP : core::pack::annealer
• RotamerBin : core::pack::rotamer_set
• RotamerBins : core::pack::rotamer_set
• RotamerConstraintCOP : core::pack::dunbrack
• RotamerConstraintOP : core::pack::dunbrack
• RotamerCouplingsCOP : core::pack::rotamer_set
• RotamerCouplingsOP : core::pack::rotamer_set
• RotamerDotsCOP : core::pack::interaction_graph
• RotamerDotsOP : core::pack::interaction_graph
• RotamerExplosionCreator_registrator : core::init
• RotamerExplosionOP : core::pack::task::operation
• RotamerLibraryCOP : core::pack::dunbrack
• RotamerLibraryOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceCOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceOP : core::pack::dunbrack
• RotamerLinksCOP : core::pack::rotamer_set
• RotamerLinksOP : core::pack::rotamer_set
• RotamerOperationCOP : core::pack::rotamer_set
• RotamerOperationOP : core::pack::rotamer_set
• RotamerOperations : core::pack::rotamer_set
• Rotamers : core::pack::rotamer_set
• RotamerSetBaseCOP : core::conformation
• RotamerSetBaseOP : core::conformation
• RotamerSetCOP : core::pack::rotamer_set
• RotamerSetFactoryOP : core::pack::rotamer_set
• RotamerSetOP : core::pack::rotamer_set
• RotamerSetOperationCOP : core::pack::rotamer_set
• RotamerSetOperationOP : core::pack::rotamer_set
• RotamerSetsBaseCOP : core::pack::rotamer_set
• RotamerSetsBaseOP : core::pack::rotamer_set
• RotamerSetsCOP : core::pack::rotamer_set
• RotamerSetsOP : core::pack::rotamer_set
• RotamerSetVector : core::pack::rotamer_set::symmetry
• RotamerSubsetsCOP : core::pack::rotamer_set
• RotamerSubsetsOP : core::pack::rotamer_set
• RotamerTrieBaseCOP : core::scoring::trie
• RotamerTrieBaseOP : core::scoring::trie
• RotamerVector : core::pack::dunbrack
• rotate_anchor_to_x_axis() : core::pose::symmetry
• RotPair : core::scoring::packstat
• RotSetOperationList : core::pack::rotamer_set
• RotSetOperationListIterator : core::pack::rotamer_set
• RotVector : core::pack::dunbrack
• RPM_Type : core::scoring::motif
• rpm_type1() : core::scoring::motif
• rpm_type2() : core::scoring::motif
• RPM_Type_NONE : core::scoring::motif
• rsd_set_from_cmd_line() : core::chemical
• RsdEnergiesBreakdownCOP : core::scoring
• RsdEnergiesBreakdownOP : core::scoring
• rsigma : core::scoring
• rt6_rt6_bb_dis2() : core::scoring::motif
• rt6_rt6_bb_dis2_explicit_stupid() : core::scoring::motif
• rt6_rt6_dis2() : core::scoring::motif
• rt_to_real6() : core::scoring::motif
• RTAP : core::kinematics
• RTOP : core::kinematics
• Ru : core::chemical::element
• rvec : core::scoring
• rvec5 : core::scoring