- m -

• main_atom_tree_diff_mover() : protocols::jobdist
• main_plain_mover() : protocols::jobdist
• main_plain_pdb_mover() : protocols::jobdist
• main_watchdog() : protocols::boinc::watchdog
• make_atr_rep_grid() : protocols::ligand_docking
• make_atr_rep_grid_without_ligand() : protocols::ligand_docking
• make_atr_rep_grid_without_ligands() : protocols::ligand_docking
• make_base_pair_aware_fold_tree() : protocols::dna
• make_base_pair_mutation() : protocols::motifs
• make_coarse_pose() : protocols::farna
• make_continuous_true_regions_in_bool_vector() : protocols::enzdes::enzutil
• make_cut_at_moving_suite() : protocols::stepwise::modeler
• make_Cx() : protocols::sic_dock
• make_dna_mutations() : protocols::motifs
• make_dna_rigid() : protocols::relax
• make_extended_coarse_pose() : protocols::farna
• make_hotspot_foldtree() : protocols::protein_interface_design
• make_phosphate_nomenclature_matches_mini() : protocols::farna
• make_selection() : protocols::nonlocal
• make_sequence_combinations() : protocols::dna
• make_single_mutants() : protocols::dna
• make_star_foldtree() : protocols::forge::methods
• make_stub_scorefxn() : protocols::protein_interface_design::movers
• make_subdirs() : protocols::dna
• make_symmetric_fibril() : protocols::fibril
• make_variants_match() : protocols::stepwise::modeler
• makeMap() : protocols::flxbb
• map_constraints_from_original_pose() : protocols::stepwise::modeler
• map_to_local_numbering() : protocols::stepwise::modeler
• mass_tracer() : protocols::ligand_docking
• max_interchain_sites() : protocols::scoring
• maximize_sub1_contact() : protocols::matdes
• mean_and_stdev() : protocols::mpi_refinement
• Medal_main() : protocols::medal
• MedalExchange_main() : protocols::medal
• mem_all_atom_rmsd_no_super() : protocols::membrane
• mem_all_atom_rmsd_with_super() : protocols::membrane
• mem_bb_rmsd_no_super() : protocols::membrane
• mem_bb_rmsd_with_super() : protocols::membrane
• membrane_axis() : protocols::membrane::geometry
• membrane_normal_to_length_15() : protocols::membrane::geometry
• merge() : protocols::forge::methods
• merge_disjoint_vectors() : protocols::stepwise::modeler
• merge_in_other_pose() : protocols::stepwise::modeler
• merge_in_other_pose_by_bond() : protocols::stepwise::modeler
• merge_in_other_pose_by_jump() : protocols::stepwise::modeler
• merge_two_poses() : protocols::stepwise::modeler
• merge_two_poses_using_full_model_info() : protocols::stepwise::modeler
• merge_vectors() : protocols::stepwise::modeler
• min_index() : protocols::ddg
• min_rotamers() : protocols::make_rot_lib
• minimize_all_sampled_floating_bases() : protocols::stepwise::modeler::rna::sugar
• minimize_backbone_tracer() : protocols::ligand_docking
• minimize_with_constraints() : protocols::stepwise::modeler::rna
• MinimizeLigand_tracer() : protocols::ligand_docking
• MKDIR() : protocols::sparta
• modeler_starting_pose_data_list() : protocols::stepwise::modeler::rna::sugar
• modeler_sugar_at_five_prime() : protocols::stepwise::sampler::rna
• modeler_sugar_at_three_prime() : protocols::stepwise::sampler::rna
• modify_ResId_based_object() : protocols::moves
• move_jump_atom_to_base() : protocols::stepwise::legacy::modeler::rna
• move_ligand_to_desired_centroid() : protocols::ligand_docking
• move_map_from_loop() : protocols::loops
• move_map_from_loops() : protocols::loops
• move_type_from_string() : protocols::stepwise::monte_carlo
• moveable_jump() : protocols::farna
• MoveMapBuilder_tracer() : protocols::ligand_docking
• MPI_CLOSE_FILE() : protocols::jd2
• MPI_JOB_DIST_TAG() : protocols::jd2
• mpi_npes() : protocols::wum
• mpi_rank() : protocols::wum
• ms_tr() : protocols::motifs
• mstype_from_name() : protocols::moves
• mt() : protocols::motifs
• mu_tr() : protocols::motifs
• multstubs() : protocols::sic_dock
• mutate_loops_for_search() : protocols::motifs
• mutate_position_vector_for_search() : protocols::motifs
• mutate_res_if_allowed() : protocols::stepwise::modeler::rna
• mv_tr() : protocols::enzdes