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• o2prime_trials() : protocols::stepwise::modeler::rna
• on_pose_accept() : protocols::medal
• open_stream() : protocols::noesy_assign
• operator!=() : protocols::jd2
• operator&() : protocols::loop_modeling
• operator<<() : protocols::abinitio , protocols::antibody , protocols::canonical_sampling , protocols::dna , protocols::docking , protocols::environment::claims , protocols::farna , protocols::features::helixAssembly , protocols::fldsgn::topology , protocols::frag_picker , protocols::frags , protocols::genetic_algorithm , protocols::hotspot_hashing , protocols::jd2::archive , protocols::jd2 , protocols::jumping , protocols::ligand_docking::ligand_options , protocols::loops::loop_closure::ccd , protocols::loops::loop_mover::perturb , protocols::loops::loop_mover::refine , protocols::loops , protocols::match::output , protocols::motifs , protocols::moves , protocols::noesy_assign , protocols::optimize_weights , protocols::pmut_scan , protocols::rigid , protocols::scoring::methods::pcs2 , protocols::scoring::methods::pcs , protocols::scoring::methods::pcsTs1 , protocols::scoring::methods::pcsTs2 , protocols::scoring::methods::pcsTs3 , protocols::scoring::methods::pcsTs4 , protocols::scoring , protocols::sic_dock , protocols::simple_moves , protocols::sparta , protocols::stepwise::modeler::rna::phosphate , protocols::stepwise::monte_carlo , protocols::toolbox , protocols::topology_broker::claims , protocols::topology_broker
• operator==() : protocols::jd2
• operator>>() : protocols::abinitio , protocols::frags , protocols::hotspot_hashing , protocols::jd2::archive , protocols::noesy_assign , protocols::sasa_scores , protocols::toolbox , protocols::topology_broker
• operator|() : protocols::loop_modeling
• oprod() : protocols::toolbox
• optimal_connection_point() : protocols::protein_interface_design
• optimize() : protocols::hybridization
• order() : protocols::forge::methods
• original_pose_residue_is_in_residue_map() : protocols::generalized_kinematic_closure
• output_bool_list() : protocols::stepwise::legacy::modeler::rna
• output_boolean() : protocols::stepwise::modeler
• output_copy_dofs() : protocols::stepwise::modeler::rna
• output_data() : protocols::stepwise::modeler::rna
• output_error_message() : protocols::scoring::methods::pcs2
• output_fold_tree_info() : protocols::stepwise::legacy::modeler::rna
• output_intermediate_pose() : protocols::jd2
• output_is_prepend_map() : protocols::stepwise::legacy::modeler::rna
• output_movemap() : protocols::stepwise::modeler
• output_packstat() : protocols::vip
• output_pair_size() : protocols::stepwise::legacy::modeler::rna
• output_pose_list() : protocols::stepwise::legacy::modeler::protein
• output_protein_movemap_header() : protocols::stepwise::modeler
• output_res_map() : protocols::stepwise::modeler::rna
• output_residue_struct() : protocols::stepwise::modeler::rna
• output_rna_movemap_header() : protocols::stepwise::modeler
• output_rotamer() : protocols::stepwise::modeler::rna
• output_seq_num_list() : protocols::stepwise::modeler::rna
• output_silent_struct() : protocols::stepwise::legacy::modeler::protein
• output_size_list() : protocols::stepwise::legacy::modeler::rna
• output_title_text() : protocols::stepwise::modeler::rna
• output_to_silent_file() : protocols::stepwise::monte_carlo
• overlap_chainbreak() : protocols::forge::methods