Here is a list of all class members with links to the classes they belong to:

- a -

• a : basic::sampling::orientations::Triple , ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• A1() : A1
• A2() : A2
• A3() : A3
• A4() : A4
• a_double : Access
• A_is_decomp_ : basic::svd::SVD_Solver
• A_is_set_ : basic::svd::SVD_Solver
• aa_ : ScoreFragInfo
• aa_codes : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• abinitio : app.surface_docking.movers.Abinitio
• abs_source() : BuildBindings.ModuleBuilder
• absolute() : utility::file::FileName , utility::file::PathName
• AbsoluteValueExpression() : numeric::expression_parser::AbsoluteValueExpression
• abstract : tools.CppParser.CppClass
• accept() : myMC
• accept_ : myMC
• accessed_options_ : utility::tag::Tag
• actions_ : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• activate() : utility::Bound< typename > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::options::Option , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T >
• activated_index() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C >
• active() : ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::FArray< typename > , utility::Bound< typename > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T >
• active_ : utility::Bound< typename >
• active_label_current_accessible_sa : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• active_label_current_relative_mutability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• active_label_current_surface_probability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• active_label_design_accessible_sa : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• active_label_design_relative_mutability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• active_label_design_surface_probability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• active_set : Solver
• active_size : Solver
• active_variables() : numeric::expression_parser::BinaryExpression , numeric::expression_parser::Expression , numeric::expression_parser::ITEExpression , numeric::expression_parser::LiteralExpression , numeric::expression_parser::MaxExpression , numeric::expression_parser::MetaMaxExpression , numeric::expression_parser::MetaMinExpression , numeric::expression_parser::MinExpression , numeric::expression_parser::UnaryExpression , numeric::expression_parser::VariableExpression
• acyclic() : ObjexxFCL::Observer
• add() : basic::datacache::ConstDataMap , basic::datacache::DataMap
• Add() : basic::sampling::orientations::QuatSet
• add() : binder::Context , Histogram , numeric::geometry::BoundingBox< typename > , numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , utility::factory::Factory< typename > , utility::json_spirit::Config_map< String > , utility::json_spirit::Config_vector< String > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyLookup< K > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::options::OptionCollection
• add_already_defined_subelement() : utility::tag::XMLSchemaSimpleSubelementList
• add_atom() : sidechain_cst_3.Residue
• add_attribute() : utility::tag::XMLSchemaComplexType , utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• add_attributes() : utility::tag::XMLSchemaComplexType , utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• add_back() : utility::vectorL< SSize, T, A >
• add_black_listed_file() : utility::Inline_File_Provider
• add_boundary_function() : numeric::interpolation::spline::SplineGenerator
• add_built_in_options() : utility::options::OptionCollection
• add_column() : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable , basic::database::insert_statement_generator::InsertGenerator , basic::database::schema_generator::PrimaryKey , basic::database::schema_generator::Schema
• add_constraint() : basic::database::schema_generator::Schema
• add_constructor : yaml.constructor.BaseConstructor
• add_decl() : binder::IncludeSet
• add_default_resource_locator() : basic::resource_manager::LazyResourceManager
• add_diagonal() : numeric::xyzMatrix< typename >
• add_edits() : utility::options::OptionCollection
• add_file_provider_hook() : utility::Inline_File_Provider
• add_first() : utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• add_footer() : zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• add_foreign_key() : basic::database::schema_generator::Schema
• add_function() : numeric::expression_parser::ArithmeticScanner
• add_group_subelement() : utility::tag::XMLSchemaSimpleSubelementList
• add_header() : zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• add_implicit_resolver : yaml.resolver.BaseResolver
• add_include() : binder::IncludeSet
• add_indent() : yaml.scanner.Scanner
• add_index() : basic::database::schema_generator::Schema
• add_input_file() : utility::Inline_File_Provider
• add_insertion_operator() : binder::Context
• add_job_options() : basic::resource_manager::LazyResourceManager
• add_key() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• add_known_value() : numeric::interpolation::spline::SplineGenerator
• add_loption : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• add_msg() : utility::excn::EXCN_Msg_Exception
• add_multi_constructor : yaml.constructor.BaseConstructor
• add_multi_representer : yaml.representer.BaseRepresenter
• add_observer() : PosePyObserver
• add_on_binders() : binder::Config
• add_on_binders_ : binder::Config
• add_option() : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager , basic::resource_manager::JobOptions , BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• add_optional_name_attribute() : utility::tag::XMLSchemaComplexTypeGenerator
• add_ordered_subelement_set_as_optional() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• add_ordered_subelement_set_as_pick_one() : utility::tag::XMLSchemaComplexTypeGenerator
• add_ordered_subelement_set_as_pick_one_optional() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• add_ordered_subelement_set_as_pick_one_or_none() : utility::tag::XMLSchemaComplexTypeGenerator
• add_ordered_subelement_set_as_pick_one_required() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• add_ordered_subelement_set_as_repeatable() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• add_ordered_subelement_set_as_required() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• add_param_to_session_button : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• add_path_resolver() : yaml.resolver.BaseResolver
• add_range() : numeric::interpolation::spline::CompoundInterpolator
• add_reference_residue() : app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceResults
• add_region() : app.pyrosetta_toolkit.modules.Region.Regions , app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• add_relevant() : utility::options::OptionCollection
• add_relevant_includes() : binder::Binder , binder::ClassBinder , binder::EnumBinder , binder::FunctionBinder
• add_representer : yaml.representer.BaseRepresenter
• add_required_name_attribute() : utility::tag::XMLSchemaComplexTypeGenerator
• add_residue() : app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceResults , app.pyrosetta_toolkit.modules.Structure.CDR
• add_resource() : basic::resource_manager::ResourceManager
• add_resource_configuration() : basic::resource_manager::LazyResourceManager
• add_resource_locator() : basic::resource_manager::LazyResourceManager
• add_resource_options() : basic::resource_manager::LazyResourceManager
• add_resource_tag_by_job_tag() : basic::resource_manager::LazyResourceManager
• add_restriction() : utility::tag::XMLSchemaRestriction
• add_rms() : numeric::model_quality::RmsData
• add_row() : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable , basic::database::insert_statement_generator::InsertGenerator
• add_simple_subelement() : utility::tag::XMLSchemaSimpleSubelementList
• add_standard_functions() : numeric::expression_parser::ArithmeticScanner
• add_symbol() : numeric::CalculatorParser
• add_to_binded() : binder::Context
• add_to_current() : utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• add_to_current_designs_callback() : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• add_top_level_element() : utility::tag::XMLSchemaDefinition
• add_value() : numeric::random::ReservoirSampler< T >
• add_variable() : numeric::expression_parser::ArithmeticScanner , numeric::expression_parser::SimpleExpressionCreator
• add_variant_button : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• add_weight() : numeric::random::WeightedSampler
• addCentroid() : loadPDB.PDBres
• addCentroids() : loadPDB.Protein , loadPDB.ProteinChain
• AddExpression() : numeric::expression_parser::AddExpression
• additional_decoy_info : pyrosetta.PyJobDistributor , src.PyJobDistributor
• AddLoopButton : app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• addscCentroid() : loadPDB.PDBres
• addTag() : utility::tag::Tag
• ads_constraints : app.surface_docking.movers.FullAtomRelax
• ads_cst : app.surface_docking.movers.FullAtomRelax
• AE1 : A
• AE1_V0 : A
• AE1_V1 : A
• AE2 : A
• AE2_V0 : A
• AE2_V1 : A
• AE3_not_binded : A
• AE3_V0_not_binded : A
• AE3_V1_not_binded : A
• AE4_not_binded : A
• AE4_V0_not_binded : A
• AE4_V1_not_binded : A
• AE5_not_binded : A
• AE5_V0_not_binded : A
• AE5_V1_not_binded : A
• AE6_not_binded : A
• AE6_V0_not_binded : A
• AE6_V1_not_binded : A
• after_send() : utility::signals::PausableSignalHub< ResultType, Signal > , utility::signals::SignalHub< ResultType, Signal >
• ala_interface() : HDdesignMover
• ala_interface_ : HDdesignMover
• alias_key : yaml.representer.BaseRepresenter
• align : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable , fmt::AlignSpec , fmt::TypeSpec< TYPE > , numeric::xyzTransform< typename >
• align_ : fmt::AlignSpec
• align_fast() : numeric::xyzTransform< typename >
• AlignSpec() : fmt::AlignSpec
• AlignTypeSpec() : fmt::AlignTypeSpec< TYPE >
• All : utility::options::OptionCollection
• all_ : utility::options::OptionCollection
• all_at_once_base : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_at_once_cpp : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_at_once_json : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_at_once_lib : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_at_once_obj : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_at_once_relative_files : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_at_once_source_cpp : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_at_once_xml : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• all_matches_below_threshold() : numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
• all_messages_ : utility::SimulateMPIData
• all_tracers() : basic::TracerManager
• all_tracers_ : basic::TracerManager
• allBenchmarks() : PerformanceBenchmark
• allfrags : FragmentAssemblyMover
• allocate_assign_char_buffer() : utility::io::ozstream
• Allocator : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• allocator_type : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• allow_block : yaml.emitter.ScalarAnalysis
• allow_block_plain : yaml.emitter.ScalarAnalysis
• allow_double_quoted : yaml.emitter.ScalarAnalysis
• allow_flow_plain : yaml.emitter.ScalarAnalysis
• allow_null_ : basic::database::schema_generator::Column
• allow_simple_key : yaml.scanner.Scanner
• allow_single_quoted : yaml.emitter.ScalarAnalysis
• allow_unicode : yaml.emitter.Emitter
• alpha : decision_function , Solver
• alpha_status : Solver
• alternative_search_paths_ : utility::io::izstream
• amide_mm_ : UBQ_GTPaseMover
• analysis : yaml.emitter.Emitter
• analyze_and_filter() : UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• analyze_scalar() : yaml.emitter.Emitter
• analyze_vip() : app.pyrosetta_toolkit.modules.protocols.AnalysisProtocols.AnalysisProtocols
• anchor : APDBCMover , yaml.events.CollectionStartEvent , yaml.events.NodeEvent , yaml.events.ScalarEvent
• anchor_node() : yaml.serializer.Serializer
• ANCHOR_TEMPLATE : yaml.serializer.Serializer
• AnchorFinderMover() : AnchorFinderMover
• anchors : yaml.composer.Composer , yaml.serializer.Serializer
• AndExpression() : numeric::expression_parser::AndExpression
• angle() : numeric::BodyPosition< typename > , numeric::Quaternion< typename >
• angle_of : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• angle_scorefxn_ : zinc1_homodimer_design
• angle_tolerance() : numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• angular_distance_between() : numeric::EulerAngles< typename >
• any_type() : rosetta_binders::has_insertion_operator_implementation::any_type
• any_vectors_ : utility::options::OptionCollection
• AnyOption() : utility::options::AnyOption< T >
• AnyOptionKey() : utility::options::AnyOptionKey
• Anys : utility::options::OptionCollection
• anys_ : utility::options::OptionCollection
• AnyVectorOption() : utility::options::AnyVectorOption< T >
• AnyVectorOptionKey() : utility::options::AnyVectorOptionKey
• AnyVectors : utility::options::OptionCollection
• APDBCMover() : APDBCMover
• append() : fmt::Buffer< T > , numeric::expression_parser::TokenSet , ObjexxFCL::ChunkVector< typename > , utility::vectorL< SSize, T, A >
• append_float_length() : fmt::BasicWriter< Char >
• append_particle() : utility::tag::XMLSchemaModelGroup
• append_particles() : utility::tag::XMLSchemaModelGroup
• apply() : AnchorFinderMover , APDBCMover , app.pyrosetta_toolkit.modules.protocols.AnalysisProtocols.VIP_Wrapper , app.pyrosetta_toolkit.modules.protocols.DesignProtocols.DesignWrapper , app.pyrosetta_toolkit.modules.protocols.DockingProtocols.LowResWrapper , app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMover , app.pyrosetta_toolkit.window_modules.vicinity_options.vicinity_window.vicinityrelaxwindow , app.surface_docking.movers.Abinitio , app.surface_docking.movers.CentroidRelax , app.surface_docking.movers.FullAtomRelax , CaToAllAtom , CoupledMovesProtocol , DougsDockDesignMinimizeMagicMover , DummyMover , ExemplarMover , ExposedStrandMover , ExtractATD , FitMover , HbsDesignMover , HDdesignMover , HDmakerMover , IAMover , IdentifyCDRClusters , LigandDockBench , LigandRepackMinimizeProtocol , Minimize , MyScoreMover , NCMinimize , numeric::BodyPosition< typename > , numeric::Quaternion< typename > , OopDesignMover , PackingAngle , PeptoidDesignMover , PhProtocol , RmsfMover , src.protocols.jd2.RosettaScriptWrapper , src.PyMolLink.PyMOLMover , supercharge , test.T850_SubClassing.My_New_Mover , test.Workshop9_my_shapes.PhiNByXDegreesMover , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover , ViewMembraneProteinMover , zinc1_homodimer_design , zinc1_homodimer_setup , zinc2_homodimer_design , zinc2_homodimer_setup
• apply_map() : loadPDB.Protein , loadPDB.ProteinChain
• apply_to_failure() : src.protocols.jd2.RosettaScriptWrapper
• applyConstraints() : app.surface_docking.movers.FullAtomRelax
• approx_lever_distance() : numeric::xyzTransform< typename >
• are_sequences_for_regions_same_length() : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• are_sequences_same_length() : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• area() : test.Workshop9_my_shapes.MyCircle , test.Workshop9_my_shapes.MyShape , test.Workshop9_my_shapes.MySquare
• Arg : utility::factory::Factory< typename >
• arg_FArray : ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename >
• ArgFormatter() : fmt::internal::ArgFormatter< Char >
• ArgList() : fmt::ArgList
• args() : fmt::internal::FormatterBase
• args_ : fmt::ArgList , fmt::internal::FormatterBase
• argsTypes : tools.CppParser.CppFunction
• ArgType() : fmt::internal::ArgType
• argv_copy_ : utility::options::OptionCollection
• ArithmeticASTRestExpression() : numeric::expression_parser::ArithmeticASTRestExpression
• ArithmeticASTRestTerm() : numeric::expression_parser::ArithmeticASTRestTerm
• ArithmeticASTValue() : numeric::expression_parser::ArithmeticASTValue
• ArithmeticScanner() : numeric::expression_parser::ArithmeticScanner
• Array : utility::json_spirit::Value_impl< Config >
• array_ : ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::FArray< typename > , ObjexxFCL::FArraySection< typename > , utility::fixedsizearray0< T, S > , utility::fixedsizearray1< T, S > , utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• array_ptr_ : utility::fixedsizearray0const_iterator< T, S > , utility::fixedsizearray0iterator< T, S > , utility::fixedsizearray1const_iterator< T, S > , utility::fixedsizearray1iterator< T, S >
• array_size() : ObjexxFCL::FArray< typename >
• array_size_ : ObjexxFCL::FArray< typename >
• array_size_bounded() : ObjexxFCL::FArray< typename >
• array_size_unbounded() : ObjexxFCL::FArray< typename >
• Array_type : utility::json_spirit::Config_map< String > , utility::json_spirit::Config_vector< String > , utility::json_spirit::Generator< Value_type, Ostream_type > , utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• artificial : tools.CppParser.CppFunction
• ascend_resolver() : yaml.resolver.BaseResolver
• asR() : numeric::urs_Quat
• assert_in() : basic::Emitter
• assert_valid_position() : numeric::MathVector< T >
• assign() : numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::DynamicIndexRange , ObjexxFCL::format::Bite< T > , ObjexxFCL::IndexRange , ObjexxFCL::StaticIndexRange , utility::file::FileName , utility::file::PathName , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• assign_data() : utility::OrderedTuple< T >
• assign_IA_mover() : IAMover
• assign_if() : ObjexxFCL::Dimension
• assign_if_bigger() : ObjexxFCL::Dimension
• assign_if_bigger_nic() : ObjexxFCL::Dimension
• assign_if_half() : ObjexxFCL::Dimension
• assign_if_half_nic() : ObjexxFCL::Dimension
• assign_if_nic() : ObjexxFCL::Dimension
• assign_Key() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C >
• assign_no_notify() : ObjexxFCL::DynamicIndexRange
• assign_ss_ : MyScoreMover
• assign_value_of() : ObjexxFCL::Dimension , ObjexxFCL::StaticIndexRange
• assigned_frags : FragmentAssemblyMover
• assignment : numeric::CalculatorParser
• ast_context : BinderVisitor
• ast_string() : numeric::expression_parser::ASTPrinter
• ASTPrinter() : numeric::expression_parser::ASTPrinter
• at() : numeric::xyzTriple< typename > , numeric::xyzVector< typename > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• at_end() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• AtmNum : PDBInfo.PDB
• AtmTyp : PDBInfo.PDB
• atom1 : calccontacts.atom_contact
• atom2 : calccontacts.atom_contact
• atom_name : pep_coord_cst
• atomContactList : calccontacts.resContact
• atomic_group : PDBInfo.PDB , PhiPsi.ATOMinfo
• atomic_interaction_cutoff() : test.T870_SubClassing_EnergyMethods2.CD2B_Method , test.T870_SubClassing_EnergyMethods2.CI2B_Method , test.Workshop9_my_shapes.CI2BScoreMethod
• atomid : calccontacts.shellAtom
• atomID : UBQ_E2Mover
• atomID_tot : UBQ_E2Mover
• atomIDs : UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• atomlist : loadPDB.PDBres
• atomname : calccontacts.shellAtom
• atomname_column : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• atomname_entry : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• atomname_label : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• atomno() : numeric::geometry::hashing::Ball
• atomno_ : numeric::geometry::hashing::Ball
• atoms_ : sidechain_cst_3.Residue
• atomtype : loadPDB.new_PDBatom , loadPDB.PDBatom
• attach() : ObjexxFCL::CArrayP< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::FArray< typename >
• attachDomains() : app.pyrosetta_toolkit.modules.Structure.protein_info
• attribute_w_default() : utility::tag::XMLSchemaAttribute
• attributes : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable , utility::tag::XMLSchemaSimpleSubelementList::ElementSummary
• attributes_ : utility::tag::XMLSchemaComplexType , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• auto_change_keep_observer_history() : app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL
• auto_change_observer() : app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL
• auto_change_send_observer_energies() : app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL
• auto_increment() : basic::database::schema_generator::Column
• auto_increment_ : basic::database::schema_generator::Column
• auto_increment_base() : basic::database::schema_generator::Column
• auto_increment_base_ : basic::database::schema_generator::Column
• auto_set_decoys() : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• auto_set_write() : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• auto_write : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• AutoKey() : utility::keys::AutoKey< O, S, C > , utility::keys::Key
• available_resource_loaders() : basic::resource_manager::ResourceLoaderFactory
• AvNAPSA_values() : supercharge
• AvNAPSA_values_ : supercharge
• Axis : numeric::BodyPosition< typename >
• axis() : numeric::BodyPosition< typename > , numeric::Quaternion< typename >
• Axis : numeric::Quaternion< typename >
• axis() : numeric::Quaternion< typename >