Here is a list of all class members with links to the classes they belong to:

- t -

• T : basic::Tracer
• t() : numeric::BodyPosition< typename > , numeric::xyzTransform< typename >
• T : ObjexxFCL::ChunkExponent , tools.CppParser.CppType_Typedef
• T6 : numeric::xyzTransform< typename >
• t_ : basic::gpu::Timer , numeric::BodyPosition< typename > , ObjexxFCL::format::Bite< T >
• t_flush() : basic::basic_otstream< CharT, Traits > , basic::ComparingTracer , basic::MemTracer , basic::PyTracer , basic::Tracer , basic::Tracer::TracerProxy , basic::TracerToFile
• t_pointer : A
• t_str() : ObjexxFCL::Fstring
• t_value : A
• tab_delim : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• tab_prefixed() : utility::options::OptionCollection
• table_init_statements() : basic::database::schema_generator::Schema
• table_name_ : basic::database::insert_statement_generator::InsertGenerator , basic::database::schema_generator::Schema
• table_schema_statements() : basic::database::schema_generator::Schema
• tag() : numeric::RocPoint
• Tag() : utility::tag::Tag
• tag : yaml.events.CollectionStartEvent , yaml.events.ScalarEvent , yaml.nodes.CollectionNode , yaml.nodes.Node , yaml.nodes.ScalarNode
• tag_ : basic::DynamicProfileThis , basic::gpu::Timer , basic::ProfileThis , CAtrace , FragID , FragInfo , numeric::RocPoint
• tag_handles : yaml.parser.Parser
• tag_prefixes : yaml.emitter.Emitter
• tags : yaml.events.DocumentStartEvent
• tags_t : utility::tag::Tag
• tail() : ObjexxFCL::Fstring , utility::in_place_list< T >
• tail_ : utility::in_place_list< T >
• target : APDBCMover
• task : app.surface_docking.movers.FullAtomRelax
• task_ : HPatchByChainNPDCalculator , InteractionGraphPerformanceBenchmark , NBuriedUnsatsCalcultor
• task_constraint_setup() : HDdesignMover
• task_design_ : HDdesignMover
• task_factory_ : UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• taskfactory_ : zinc1_homodimer_design , zinc2_homodimer_design
• tearDown() : DatabaseIOBenchmark , DesignBenchmark , DockingBenchmark< dock, TScale > , FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark , LigandDockBenchmark , LigandDockScriptBenchmark , MinimizerBenchmark< sft, TScale > , OptionCollectionBenchmark , PDB_IOBenchmark , PerformanceBenchmark , ResidueTypeBenchmark , ScoreBenchmark , ScoreEachBenchmark , ShearMoverBenchmark , SmallMoverBenchmark , XMLParseBenchmark
• temp_ : myMC
• term : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IterableIPShell , app.pyrosetta_toolkit.window_modules.pymol_integration.PyMOL.AdvancedPyMOL , numeric::CalculatorParser
• terminal_output : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• test_feature_ : DatabaseIOBenchmark
• test_import() : tests.test_basic.TestInitialization
• test_init() : tests.test_basic.TestInitialization
• test_move() : ExemplarMover , Minimize , NCMinimize
• test_p() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• test_pose_creation() : tests.test_basic.TestInitialization
• test_ref() : test.T850_SubClassing.PyOverloadTest , utility::py::OverloadTest
• testAllLengthsEqual() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BasicTests
• testAsciiBreakLine() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BreakLineTests
• testBorder() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.OptionOverrideTests
• testHeader() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.OptionOverrideTests
• testHrulesAll() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.OptionOverrideTests
• testHrulesNone() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.OptionOverrideTests
• testHtmlBreakLine() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BreakLineTests
• testHtmlOutput() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.HtmlOutputTests
• testHtmlOutputFormated() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.HtmlOutputTests
• testMethod() : BaseWrap , DemoBase , DemoDerived
• testNoBlankLines() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BasicTests
• testNoDecimals() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.FloatFormatTests
• testPadWith2Zeroes() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.FloatFormatTests
• testReverseSort() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.SortingTests
• testRoundTo5DP() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.FloatFormatTests
• testRowColEquivalenceASCII() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BuildEquivelanceTest
• testRowColEquivalenceHTML() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BuildEquivelanceTest
• testRowMixEquivalenceASCII() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BuildEquivelanceTest
• testRowMixEquivalenceHTML() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BuildEquivelanceTest
• testSliceFirstTwoRows() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.SlicingTests
• testSliceLastTwoRows() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.SlicingTests
• testSortBy() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.SortingTests
• testSortKey() : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.SortingTests
• text_ : basic::Report
• textbox : app.pyrosetta_toolkit.pyrosetta_toolkit.MainTracer
• tf : app.pyrosetta_toolkit.modules.protocols.DockingProtocols.LowResWrapper
• tf_design_ : HDdesignMover
• then_expression() : numeric::expression_parser::ITEExpression
• then_expression_ : numeric::expression_parser::ITEExpression
• theta() : numeric::EulerAngles< typename > , numeric::sphericalVector< typename >
• theta_ : numeric::sphericalVector< typename > , numeric::UniformRotationSampler
• theta_degrees() : numeric::EulerAngles< typename >
• theta_radians() : numeric::EulerAngles< typename >
• thioester_mm_ : UBQ_E2Mover
• this_weak_ptr_ : numeric::ClusteringTreeNode
• three_letter_name : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ParamsProperties , app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.PatchProperties
• three_letter_to_prop_map : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• throw_not_array() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_colon() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_object() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_pair() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_string() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_not_value() : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• throw_on_double_registration_ : basic::resource_manager::FallbackConfigurationFactory , basic::resource_manager::ResourceLoaderFactory , basic::resource_manager::ResourceLocatorFactory , basic::resource_manager::ResourceOptionsFactory
• time_ : PerformanceBenchmark
• Timer() : basic::gpu::Timer
• Times() : basic::sampling::orientations::Quaternion
• timestamp : basic::TracerOptions
• timestamp_regexp : yaml.constructor.SafeConstructor
• titrate_pH() : PhProtocol
• titration_successful_ : PhProtocol
• tmpbuf() : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• tmpbuf_ : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• to_bare_name() : utility::file::FileName
• to_default() : ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray< typename > , utility::options::Option , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T >
• to_diag() : numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• to_dock_string : app.pyrosetta_toolkit.modules.protocols.DockingProtocols.LowResWrapper
• to_identity() : numeric::BodyPosition< typename > , numeric::Quaternion< typename > , numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• to_local_coordinate() : numeric::HomogeneousTransform< T >
• to_local_name() : utility::file::FileName
• to_quaternion() : numeric::xyzTransform< typename >
• to_rotation_matrix() : numeric::EulerAngles< typename >
• to_string() : fmt::BasicStringRef< Char > , numeric::expression_parser::FunctionToken , numeric::expression_parser::LiteralToken , numeric::expression_parser::SimpleToken , numeric::expression_parser::Token , numeric::expression_parser::VariableToken , numeric::interpolation::Histogram< typename, typename > , numeric::kdtree::KDPoint , numeric::xyzVector< typename >
• to_yaml : yaml.YAMLObject
• to_zero() : ObjexxFCL::FArray< typename >
• token_number : yaml.scanner.SimpleKey
• TokenHub() : utility::signals::TokenHub< ResultType, Signal >
• tokens : yaml.scanner.Scanner
• tokens_ : numeric::expression_parser::TokenSet , utility::signals::TokenHub< ResultType, Signal >
• tokens_taken : yaml.scanner.Scanner
• TokenSet() : numeric::expression_parser::TokenSet
• tol : pep_coord_cst
• tolerance : app.surface_docking.movers.FullAtomRelax , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• toolkit : app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame , app.pyrosetta_toolkit.window_main.frames.OutputFrame.OutputFrame , app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame , app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame , app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput , app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput , app.pyrosetta_toolkit.window_main.IO.SessionIO.SessionIO
• toolkit_home : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window
• top() : numeric::expression_parser::TokenSet
• top_level_elements_ : utility::tag::XMLSchemaDefinition
• top_score_map : app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
• top_scoring_by_number_map : app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
• top_scoring_by_percent_map : app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
• total_counts() : numeric::MultiDimensionalHistogram
• total_counts_ : numeric::MultiDimensionalHistogram
• totalRes : app.surface_docking.movers.FullAtomRelax
• Trace : basic::Tracer
• trace() : numeric::xyzMatrix< typename >
• Tracer() : basic::Tracer
• tracer_ : basic::Tracer::TracerProxy
• tracer_options() : basic::Tracer
• tracer_options_ : basic::Tracer
• TracerManager() : basic::TracerManager
• TracerProxy() : basic::Tracer::TracerProxy
• TracerToFile() : basic::TracerToFile
• track_insertion_order() : basic::resource_manager::JobOptions
• track_insertion_order_ : basic::resource_manager::JobOptions
• train() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline , numeric::interpolation::spline::TricubicSpline
• Traits : numeric::BodyPosition< typename > , numeric::Quaternion< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::FArrayInitializer< typename, class >
• traits_type : boost_adaptbx::python::streambuf , fmt::internal::FormatBuf< Char > , ObjexxFCL::FArrayTraits< typename > , ObjexxFCL::FArrayTraits< numeric::xyzVector< T > > , ObjexxFCL::TypeTraits< T > , ObjexxFCL::TypeTraits< double > , ObjexxFCL::TypeTraits< float > , ObjexxFCL::TypeTraits< int > , ObjexxFCL::TypeTraits< long double > , ObjexxFCL::TypeTraits< long int > , ObjexxFCL::TypeTraits< short int > , ObjexxFCL::TypeTraits< unsigned int > , ObjexxFCL::TypeTraits< unsigned long int > , ObjexxFCL::TypeTraits< unsigned short int > , utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• traits_type_eof() : boost_adaptbx::python::streambuf
• trajectory_fname_ : InteractionGraphPerformanceBenchmark
• trans_mover : app.surface_docking.movers.FullAtomRelax
• transaction() : utility::sql_database::transaction
• transaction_counter_ : utility::sql_database::session
• transaction_mode_ : utility::sql_database::session
• transform() : numeric::BodyPosition< typename >
• Transform : numeric::xyzTransform< typename >
• transformall() : loadPDB.Protein , loadPDB.ProteinChain
• transformed() : numeric::BodyPosition< typename >
• translate() : numeric::geometry::BoundingBox< typename >
• translate_info_ : LigandDockBench
• Translation : numeric::BodyPosition< typename >
• translation() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• translation_ : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• translation_real() : numeric::geometry::hashing::xyzStripeHash
• TranslationUnit : tools.CppParser.ClangXML
• transpose() : numeric::MathMatrix< T > , numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• transpose_product : numeric::xyzMatrix< typename > , numeric::xyzVector< typename >
• transposed() : numeric::xyzMatrix< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::KeyFArray2D< typename >
• transposeRowSize() : numeric::fourier::SO3coeffs
• tree() : numeric::kdtree::KDNode
• tree_ : numeric::kdtree::KDNode
• tree_edge() : utility::graph::null_bfs_prune_visitor , utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap > , utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• tree_init() : numeric::geometry::hashing::SixDCoordinateBinner
• TricubicSpline() : numeric::interpolation::spline::TricubicSpline
• trim() : ObjexxFCL::Cstring , ObjexxFCL::Fstring , utility::options::OptionCollection
• trim_whitespace() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• trimmed() : ObjexxFCL::Cstring , ObjexxFCL::Fstring , utility::options::OptionCollection
• trimmed_whitespace() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• trimmed_whitespace_range() : ObjexxFCL::Fstring
• Triple() : basic::sampling::orientations::Triple
• true_negative_count_ : numeric::RocCurve
• true_positive_count_ : numeric::RocCurve
• twiddles() : numeric::fourier::kiss_fft_state
• twiddles_ : numeric::fourier::kiss_fft_state
• two() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• two_ubiquitins_ : UBQ_E2Mover
• TwoDHistogram() : numeric::histograms::TwoDHistogram< key1, key2 >
• type() : basic::database::DatabaseSessionOptions , basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::ResourceLocator , basic::resource_manager::ResourceOptions , fmt::AlignTypeSpec< TYPE > , fmt::ArgList , fmt::FormatSpec , fmt::internal::Arg
• Type : fmt::internal::ArgArray< N >
• type : fmt::internal::ArgType , fmt::internal::Conditional< B, T, F > , fmt::internal::Conditional< false, T, F > , fmt::internal::EnableIf< true, T >
• Type : fmt::internal::MakeUnsigned< T >
• type() : fmt::internal::MakeValue< Char >
• Type : fmt::internal::TypeSelector< FitsIn32Bits > , fmt::internal::TypeSelector< false > , fmt::internal::Value
• type() : fmt::TypeSpec< TYPE > , loadPDB.ProteinChain , numeric::expression_parser::FunctionToken , numeric::expression_parser::LiteralToken , numeric::expression_parser::SimpleToken , numeric::expression_parser::Token , numeric::expression_parser::VariableToken
• Type : numeric::interpolation::HistogramAP< X, Y > , numeric::interpolation::HistogramCAP< X, Y > , numeric::interpolation::HistogramCOP< X, Y > , numeric::interpolation::HistogramOP< X, Y > , numeric::IOTraits< T > , numeric::IOTraits< double > , numeric::IOTraits< float > , numeric::IOTraits< int > , numeric::IOTraits< long double > , numeric::IOTraits< long int > , numeric::IOTraits< short int > , numeric::IOTraits< unsigned int > , numeric::IOTraits< unsigned long int > , numeric::IOTraits< unsigned short int > , numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• type() : utility::json_spirit::Value_impl< Config > , utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaModelGroup , utility::tag::XMLSchemaType
• type_ : basic::database::schema_generator::Column , fmt::FormatSpec , numeric::expression_parser::SimpleToken , tools.CppParser.CppType_Typedef , tools.CppParser.CppVariable , utility::tag::XMLSchemaAttribute , utility::tag::XMLSchemaModelGroup , utility::tag::XMLSchemaType
• type_listbox : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• type_name() : utility::tag::XMLSchemaElement , utility::tag::XMLSchemaType
• type_name_ : utility::tag::XMLSchemaElement
• type_of() : ObjexxFCL::Fstring
• type_string() : utility::options::AnyOption< T > , utility::options::AnyVectorOption< T > , utility::options::BooleanOption , utility::options::BooleanVectorOption , utility::options::FileOption , utility::options::FileVectorOption , utility::options::IntegerOption , utility::options::IntegerVectorOption , utility::options::Option , utility::options::PathOption , utility::options::PathVectorOption , utility::options::RealOption , utility::options::RealVectorOption , utility::options::ResidueChainVectorOption , utility::options::StringOption , utility::options::StringVectorOption
• type_string_ : basic::database::schema_generator::DbDataType
• TypeCurSelection : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• TypeLabel : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• typeList : loadPDB.Protein
• types : binder::Context
• Types : tools.CppParser.GccXML , tools.CppParser.ReferenceSection
• types_ : fmt::ArgList