Here is a list of all class members with links to the classes they belong to:

- r -

• R() : numeric::BodyPosition< typename > , numeric::xyzTransform< typename >
• r : Solver::SolutionInfo
• R_ : numeric::BodyPosition< typename >
• R_fresh_ : numeric::BodyPosition< typename >
• R_refresh() : numeric::BodyPosition< typename >
• rad2deg() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radial_bin_index() : numeric::geometry::hashing::SixDCoordinateBinner
• radians_to_degrees() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radius : basic::sampling::orientations::QuatDBMetadata , numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash::const_iterator , numeric::sphericalVector< typename > , test.Workshop9_my_shapes.MyCircle
• radius_ : numeric::geometry::hashing::Ball , numeric::sphericalVector< typename >
• rama_id : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• rama_terms : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• random_element() : numeric::random::RandomGenerator
• random_mover : app.surface_docking.movers.FullAtomRelax
• random_point() : numeric::IntervalSet< typename >
• random_range() : numeric::random::RandomGenerator
• random_sample() : numeric::random::WeightedSampler
• RandomGenerator() : numeric::random::RandomGenerator
• randomize_button : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• randomize_first : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• randomize_loops_bool : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• range() : numeric::MultiDimensionalHistogram , utility::fixedsizearray0< T, S > , utility::fixedsizearray1< T, S >
• rank_ : utility::SimulateMPI
• raw_buffer : yaml.reader.Reader
• raw_decode : yaml.reader.Reader
• raw_default_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• raw_input() : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.IPythonView
• raw_utf8_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• raw_value_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• rbegin() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• rdbuf() : utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , zlib_stream::basic_zip_istreambase< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
• RDONLY : fmt::File
• RDWR : fmt::File
• re_init() : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• read() : binder::Config , fmt::File , ObjexxFCL::Fstring , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::tag::Tag
• read_buffer : boost_adaptbx::python::streambuf
• read_counts_ : utility::io::FileContentsMap
• read_data() : numeric::kdtree::KDPoint
• read_FASC() : app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
• read_file_and_replace_b_factors() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• read_footer() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• read_from_db() : numeric::interpolation::Histogram< typename, typename >
• read_in_insert_loop_info() : APDBCMover
• read_limit_ : utility::io::FileContentsMap
• read_next() : utility::json_spirit::Stream_reader< Istream_type, Value_type > , utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• read_pdb_into_database_flat() : app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB
• read_pdb_into_map() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• read_PDBList() : app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
• read_properties() : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.Properties
• read_SC() : app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
• read_scores() : app.pyrosetta_toolkit.modules.ScoreAnalysis.ScoreAnalysis
• read_uint32() : zlib_stream::basic_zip_istream< Elem, Tr, ElemA, ByteT, ByteAT >
• readDefaults() : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• readsome : ObjexxFCL::Fstring , utility::io::icstream , utility::io::irstream , utility::io::izstream
• Real : numeric::geometry::hashing::SixDCoordinateBinner , numeric::geometry::hashing::SixDOffsetTree
• real_eigenvalues() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_eigenvectors() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_FArray : ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename >
• real_indices_ : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_options_ : basic::resource_manager::JobOptions
• real_vector_options_ : basic::resource_manager::JobOptions
• real_vectors_ : utility::options::OptionCollection
• RealEigenvalueType : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• RealEigenvectorType : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• RealOption() : utility::options::RealOption
• RealOptionKey() : utility::options::RealOptionKey
• Reals : utility::options::OptionCollection
• reals_ : utility::options::OptionCollection
• RealScalar : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• RealVectorOption() : utility::options::RealVectorOption
• RealVectorOptionKey() : utility::options::RealVectorOptionKey
• RealVectors : utility::options::OptionCollection
• reason : yaml.reader.ReaderError
• reason_ : utility::json_spirit::Error_position
• receive() : basic::mpi::DbMoverMessageListener , basic::mpi::MessageListener
• receive_char_from_node() : utility::SimulateMPI
• receive_double_from_node() : utility::SimulateMPI
• receive_doubles_from_node() : utility::SimulateMPI
• receive_integer_from_anyone() : utility::SimulateMPI
• receive_integer_from_node() : utility::SimulateMPI
• receive_integers_from_node() : utility::SimulateMPI
• receive_linkunits_from() : utility::signals::SignalHub< ResultType, Signal >
• receive_string_from_node() : utility::SimulateMPI
• receive_tokens_from() : utility::signals::TokenHub< ResultType, Signal >
• recent_history_queue() : utility::recent_history_queue
• recent_history_queue_ : utility::recent_history_queue
• recognized_aa : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• reconstruct_gradient() : Solver
• record() : numeric::MultiDimensionalHistogram
• recover_low : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput , myMC
• recursive_objects : yaml.constructor.BaseConstructor
• Red : basic::Tracer
• redesign_20() : InteractionGraphPerformanceBenchmark
• redimension() : ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• redirect_stdout_to_default() : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window
• redirect_stdout_to_textbox() : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window
• reduce_expression() : ObjexxFCL::Dimension
• reduceContact() : calccontacts.resContact
• reducible() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum
• ref() : ObjexxFCL::Fsubstring
• ref_cycles : app.surface_docking.movers.FullAtomRelax
• ref_pose_ : FitMover
• refChain : loadPDB.chainType
• reference : app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceResults , numeric::BodyPosition< typename >
• Reference : numeric::BodyPosition< typename >
• reference : numeric::Quaternion< typename >
• Reference : numeric::Quaternion< typename >
• reference : numeric::sphericalVector< typename >
• Reference : numeric::sphericalVector< typename >
• reference : numeric::xyzMatrix< typename >
• Reference : numeric::xyzMatrix< typename >
• reference : numeric::xyzTriple< typename >
• Reference : numeric::xyzTriple< typename >
• reference : numeric::xyzVector< typename >
• Reference : numeric::xyzVector< typename >
• reference : ObjexxFCL::CArray< typename >
• Reference : ObjexxFCL::CArray< typename >
• reference : ObjexxFCL::CArrayP< typename >
• Reference : ObjexxFCL::CArrayP< typename >
• reference : ObjexxFCL::Chunk< T >
• Reference : ObjexxFCL::Chunk< T >
• reference : ObjexxFCL::ChunkVector< typename >
• Reference : ObjexxFCL::ChunkVector< typename >
• reference() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::FArray1< typename >
• Reference : ObjexxFCL::FArray1< typename >
• reference : ObjexxFCL::FArray1A< typename >
• Reference : ObjexxFCL::FArray1A< typename >
• reference : ObjexxFCL::FArray1D< typename >
• Reference : ObjexxFCL::FArray1D< typename >
• reference : ObjexxFCL::FArray1P< typename >
• Reference : ObjexxFCL::FArray1P< typename >
• reference : ObjexxFCL::FArray2< typename >
• Reference : ObjexxFCL::FArray2< typename >
• reference : ObjexxFCL::FArray2A< typename >
• Reference : ObjexxFCL::FArray2A< typename >
• reference : ObjexxFCL::FArray2D< typename >
• Reference : ObjexxFCL::FArray2D< typename >
• reference : ObjexxFCL::FArray2P< typename >
• Reference : ObjexxFCL::FArray2P< typename >
• reference : ObjexxFCL::FArray3< typename >
• Reference : ObjexxFCL::FArray3< typename >
• reference : ObjexxFCL::FArray3A< typename >
• Reference : ObjexxFCL::FArray3A< typename >
• reference : ObjexxFCL::FArray3D< typename >
• Reference : ObjexxFCL::FArray3D< typename >
• reference : ObjexxFCL::FArray3P< typename >
• Reference : ObjexxFCL::FArray3P< typename >
• reference : ObjexxFCL::FArray4< typename >
• Reference : ObjexxFCL::FArray4< typename >
• reference : ObjexxFCL::FArray4A< typename >
• Reference : ObjexxFCL::FArray4A< typename >
• reference : ObjexxFCL::FArray4D< typename >
• Reference : ObjexxFCL::FArray4D< typename >
• reference : ObjexxFCL::FArray4P< typename >
• Reference : ObjexxFCL::FArray4P< typename >
• reference : ObjexxFCL::FArray5< typename >
• Reference : ObjexxFCL::FArray5< typename >
• reference : ObjexxFCL::FArray5A< typename >
• Reference : ObjexxFCL::FArray5A< typename >
• reference : ObjexxFCL::FArray5D< typename >
• Reference : ObjexxFCL::FArray5D< typename >
• reference : ObjexxFCL::FArray5P< typename >
• Reference : ObjexxFCL::FArray5P< typename >
• reference : ObjexxFCL::FArray6< typename >
• Reference : ObjexxFCL::FArray6< typename >
• reference : ObjexxFCL::FArray6A< typename >
• Reference : ObjexxFCL::FArray6A< typename >
• reference : ObjexxFCL::FArray6D< typename >
• Reference : ObjexxFCL::FArray6D< typename >
• reference : ObjexxFCL::FArray6P< typename >
• Reference : ObjexxFCL::FArray6P< typename >
• reference : ObjexxFCL::FArray< typename >
• Reference : ObjexxFCL::FArray< typename >
• reference : ObjexxFCL::FArraySection< typename >
• Reference : ObjexxFCL::FArraySection< typename >
• reference : ObjexxFCL::KeyFArray1D< typename >
• Reference : ObjexxFCL::KeyFArray1D< typename >
• reference : ObjexxFCL::KeyFArray2D< typename >
• Reference : ObjexxFCL::KeyFArray2D< typename >
• reference : ObjexxFCL::KeyFArray3D< typename >
• Reference : ObjexxFCL::KeyFArray3D< typename >
• reference : ObjexxFCL::KeyFArray4D< typename >
• Reference : ObjexxFCL::KeyFArray4D< typename >
• reference : ObjexxFCL::KeyFArray5D< typename >
• Reference : ObjexxFCL::KeyFArray5D< typename >
• reference : ObjexxFCL::KeyFArray6D< typename >
• Reference : ObjexxFCL::KeyFArray6D< typename >
• reference : tools.CppParser.CppClass , tools.CppParser.CppFunction , utility::BitSet< B >
• Reference : utility::BitSet< B >
• reference : utility::BitVector< B >
• Reference : utility::BitVector< B >
• reference : utility::DereferenceIterator< Container > , utility::fixedsizearray0const_iterator< T, S > , utility::fixedsizearray0iterator< T, S > , utility::fixedsizearray1const_iterator< T, S > , utility::fixedsizearray1iterator< T, S > , utility::keys::ClassKeyMap< K, T, C >
• Reference : utility::keys::ClassKeyMap< K, T, C >
• reference : utility::keys::ClassKeyVector< K, T, C >
• Reference : utility::keys::ClassKeyVector< K, T, C >
• reference : utility::keys::KeyLookup< K >
• Reference : utility::keys::KeyLookup< K >
• reference : utility::keys::KeyMapTraits< K, T >
• Reference : utility::keys::KeyMapTraits< K, T >
• reference : utility::keys::KeySetTraits< K >
• Reference : utility::keys::KeySetTraits< K >
• reference : utility::keys::KeyVector< K, T >
• Reference : utility::keys::KeyVector< K, T >
• reference : utility::keys::KeyVectorTraits< K >
• Reference : utility::keys::KeyVectorTraits< K >
• reference : utility::keys::SmallKeyMap< K, T >
• Reference : utility::keys::SmallKeyMap< K, T >
• reference : utility::keys::SmallKeyVector< K, T >
• Reference : utility::keys::SmallKeyVector< K, T >
• reference : utility::vector0< T, A >
• Reference : utility::vector0< T, A >
• reference : utility::vector0< bool, A >
• Reference : utility::vector0< bool, A >
• reference : utility::vector1< T, A >
• Reference : utility::vector1< T, A >
• reference : utility::vector1< bool, A >
• Reference : utility::vector1< bool, A >
• reference : utility::vectorL< SSize, T, A >
• Reference : utility::vectorL< SSize, T, A >
• reference : utility::vectorL< L, bool, A >
• Reference : utility::vectorL< L, bool, A >
• reference_columns_ : basic::database::schema_generator::ForeignKey
• reference_copy() : ObjexxFCL::Dimension
• reference_name() : utility::tag::XMLSchemaElement
• reference_path : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown , app.pyrosetta_toolkit.window_main.menu.Menus
• reference_pose : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• reference_sequence : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• reference_table_ : basic::database::schema_generator::ForeignKey
• ReferenceCount() : utility::pointer::ReferenceCount
• ReferenceSection : tools.CppParser.ClangXML
• refine_cycles : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• refine_repack_cycles : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• refine_stage_ : PhProtocol
• refLine : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• refuse_unexpected_files() : utility::io::FileContentsMap
• refuse_unexpected_files_ : utility::io::FileContentsMap
• region : app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceInfo , app.pyrosetta_toolkit.modules.Region.Region , app.pyrosetta_toolkit.modules.Structure.CDR
• region_chain : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• region_end : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• region_exists() : app.pyrosetta_toolkit.modules.Region.Region
• region_sequence : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• region_start : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• regional_score_class : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• regional_scoring : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• regions : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown , app.pyrosetta_toolkit.modules.Region.Regions , app.pyrosetta_toolkit.modules.Structure.CDR , app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• register_calculators() : HDdesignMover
• register_tracer() : basic::Tracer
• Registrant() : utility::factory::Registrant< typename >
• registry() : utility::factory::Factory< typename >
• Registry : utility::factory::Factory< typename >
• reinit_regions_into_listbox() : app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• reinit_regions_on_new_pose() : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• reinitialize_for_each_job() : AnchorFinderMover , ExtractATD , IAMover , PackingAngle , PhProtocol , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• reinitialize_for_new_input() : AnchorFinderMover , ExtractATD , IAMover , PackingAngle , PhProtocol , UBQ_E2Mover , UBQ_GTPase_disulfide_Mover , UBQ_GTPaseMover
• relative() : utility::file::FileName , utility::file::PathName
• relax() : app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols
• relax_bb_only() : app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols
• relax_pose() : PhProtocol
• relax_residue() : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• relax_residue_and_neighbors() : app.pyrosetta_toolkit.modules.protocols.MinimizationProtocols.MinimizationProtocols
• relax_residue_neighbors() : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• release_buffer() : utility::signals::BufferedSignalHub< ResultType, Signal >
• release_file() : utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
• relevant_ : utility::options::OptionCollection
• reload_pdb_button : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager
• remainder() : numeric::RemainderSelector< T, bool > , numeric::RemainderSelector< T, true > , ObjexxFCL::RemainderSelector< T, bool > , ObjexxFCL::RemainderSelector< T, true >
• remAlt : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• remH20 : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• remHet : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• remodel() : app.pyrosetta_toolkit.modules.protocols.DesignProtocols.DesignProtocols
• remove() : utility::factory::Factory< typename >
• Remove() : utility::graph::RingDetection< Graph >
• remove() : utility::in_place_list< T > , utility::keys::KeyLookup< K >
• remove_alternate_residues() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• remove_alternates_var : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• remove_as_observer() : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename >
• remove_back() : utility::vectorL< SSize, T, A >
• remove_center_of_mass() : numeric::alignment::QCP_Kernel< Real >
• remove_chain() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• remove_dox_symbols() : tools.dox_extract.dox_extract
• remove_element_column() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• remove_from_current_designs_callback() : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• remove_hetatm_atoms() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• remove_hetatm_var : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• remove_input_file() : utility::Inline_File_Provider
• remove_invalid() : utility::signals::SignalHub< ResultType, Signal >
• remove_observer() : ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::Observer , ObjexxFCL::ObserverMulti , ObjexxFCL::ObserverSingle , PosePyObserver
• remove_option() : basic::resource_manager::JobOptions
• remove_possible_simple_key() : yaml.scanner.Scanner
• remove_redundant() : numeric::UniformRotationSampler
• remove_region() : app.pyrosetta_toolkit.modules.Region.Regions , app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• remove_trailing_zeros_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• remove_unnecessary_whitespace() : tools.dox_extract.dox_extract
• remove_variant() : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• remove_variant_button : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• remove_waters() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• remove_waters_var : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• removeLigands() : loadPDB.Protein
• removePatch() : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• RemovePatchButton : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• rend() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• repack_connection : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMover , app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• repack_connection_and_insert : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMover
• repack_connection_and_piece : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• repack_connection_and_piece_callback() : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• repack_connection_callback() : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• repack_interface : app.pyrosetta_toolkit.modules.protocols.DockingProtocols.LowResWrapper
• repack_only : app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• repeatable_max_occurs_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• repeatable_min_occurs_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• repeats : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• replace_atom_b_factor() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• replace_col() : numeric::MathMatrix< T >
• replace_layer() : numeric::MathNTensor< T > , numeric::MathTensor< T >
• replace_res_and_atoms_button : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• replace_res_and_atoms_var : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• replace_residue_b_factor() : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• replace_row() : numeric::MathMatrix< T >
• Report() : basic::gpu::Timer , basic::Report
• report_ : basic::Reporter
• report_unhandled_arg() : fmt::internal::ArgVisitor< Impl, Result >
• Reporter() : basic::Reporter
• represent() : yaml.representer.BaseRepresenter
• represent_bool() : yaml.representer.SafeRepresenter
• represent_complex() : yaml.representer.Representer
• represent_data() : yaml.representer.BaseRepresenter
• represent_date() : yaml.representer.SafeRepresenter
• represent_datetime() : yaml.representer.SafeRepresenter
• represent_dict() : yaml.representer.SafeRepresenter
• represent_float() : yaml.representer.SafeRepresenter
• represent_instance() : yaml.representer.Representer
• represent_int() : yaml.representer.SafeRepresenter
• represent_list() : yaml.representer.SafeRepresenter
• represent_long() : yaml.representer.Representer , yaml.representer.SafeRepresenter
• represent_mapping() : yaml.representer.BaseRepresenter
• represent_module() : yaml.representer.Representer
• represent_name() : yaml.representer.Representer
• represent_none() : yaml.representer.SafeRepresenter
• represent_object() : yaml.representer.Representer
• represent_scalar() : yaml.representer.BaseRepresenter
• represent_sequence() : yaml.representer.BaseRepresenter
• represent_set() : yaml.representer.SafeRepresenter
• represent_str() : yaml.representer.Representer , yaml.representer.SafeRepresenter
• represent_tuple() : yaml.representer.Representer
• represent_undefined() : yaml.representer.SafeRepresenter
• represent_unicode() : yaml.representer.Representer , yaml.representer.SafeRepresenter
• represent_yaml_object() : yaml.representer.SafeRepresenter
• represented_objects : yaml.representer.BaseRepresenter
• request() : basic::mpi::DbMoverMessageListener , basic::mpi::MessageListener
• request_bindings() : binder::Binder , binder::Context
• request_bindings_and_skipping() : binder::Binder , binder::ClassBinder , binder::EnumBinder , binder::FunctionBinder
• request_by_name() : basic::sampling::orientations::QuaternionGridManager
• request_by_radius() : basic::sampling::orientations::QuaternionGridManager
• request_by_size() : basic::sampling::orientations::QuaternionGridManager
• request_file() : utility::Inline_File_Provider_Hook
• request_skipping() : binder::Binder
• required : yaml.scanner.SimpleKey
• required_attribute() : utility::tag::XMLSchemaAttribute
• requiredTypes : tools.CppParser.CppClass
• res1 : calccontacts.resContact
• res2 : calccontacts.resContact
• res_to_loose_ : ExposedStrandMover
• resaa : loadPDB.PDBres
• reserve() : fmt::Buffer< T > , ObjexxFCL::Chunk< T > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• reserve_destination_size() : utility::subset_mapping
• reservoir_ : numeric::random::WeightedReservoirSampler< T >
• ReservoirSampler() : numeric::random::ReservoirSampler< T >
• Reset() : basic::gpu::Timer , basic::Tracer
• reset() : numeric::geometry::BoundingBox< typename > , numeric::random::WeightedReservoirSampler< T >
• reset_all_flags() : numeric::ClusteringTreeNode
• reset_counts() : numeric::MultiDimensionalHistogram
• reset_coval() : utility::heap
• reset_options() : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• reset_state() : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• reset_zip_stream() : zlib_stream::basic_zip_ostream< Elem, Tr, ElemA, ByteT, ByteAT >
• resfile : app.pyrosetta_toolkit.modules.protocols.DesignProtocols.DesignWrapper , app.pyrosetta_toolkit.modules.protocols.FloppyTailProtocol.FloppyTailProtocol
• resfilename : pyrosetta.toolbox.generate_resfile.ResfileWriter , toolbox.generate_resfile.ResfileWriter
• reshape() : ObjexxFCL::ChunkVector< typename >
• resi() : numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash
• resi_ : sidechain_cst_3.Residue
• resid : loadPDB.new_PDBatom , loadPDB.PDBatom , loadPDB.PDBres
• resid_ : numeric::geometry::hashing::Ball
• resid_2_chain_and_resid_ : HPatchByChainNPDCalculator
• residue_chain : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• residue_chain_vectors_ : utility::options::OptionCollection
• residue_definitions : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow , app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• residue_energy() : test.T850_SubClassing.MyNewCI1B , test.T860_SubClassing_EnergyMethods.MyCI1B_Method , test.T870_SubClassing_EnergyMethods2.CI1B_Method , test.Workshop9_my_shapes.LengthScoreMethod
• residue_energy_of_Eterm : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• residue_energy_total : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• residue_pair_energy() : test.T870_SubClassing_EnergyMethods2.CD2B_Method , test.T870_SubClassing_EnergyMethods2.CI2B_Method , test.Workshop9_my_shapes.CI2BScoreMethod
• residue_resnum : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• residue_rosetta_resnum : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• residue_string : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window , app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• residue_types_ : ResidueTypeBenchmark
• ResidueChainVectorOption() : utility::options::ResidueChainVectorOption
• ResidueChainVectorOptionKey() : utility::options::ResidueChainVectorOptionKey
• ResidueChainVectors : utility::options::OptionCollection
• residues : app.pyrosetta_toolkit.modules.Structure.CDR
• RESIDUES_aliased : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• ResidueTypeBenchmark() : ResidueTypeBenchmark
• resinfo : app.pyrosetta_toolkit.modules.definitions.restype_definitions.definitions
• resize() : basic::datacache::DataCache< Data > , fmt::Buffer< T > , numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fft_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state , numeric::random::WeightedSampler , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray< typename > , utility::in_place_list< T > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T >
• resize_counts() : numeric::MultiDimensionalHistogram
• resn_ : sidechain_cst_3.Residue
• resnum : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow , loadPDB.PDBres
• ResNum : PDBInfo.PDB
• resnum_and_chain() : utility::options::ResidueChainVectorOption
• resnum_callback() : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• resnum_column : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• resnum_entry : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• resnum_label : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• resolve() : yaml.resolver.BaseResolver
• resolver_exact_paths : yaml.resolver.BaseResolver
• resolver_prefix_paths : yaml.resolver.BaseResolver
• resource_configurations_ : basic::resource_manager::LazyResourceManager
• resource_description() : basic::resource_manager::fallback_configuration::NativeFallbackConfigurationCreator , basic::resource_manager::FallbackConfigurationCreator
• resource_locators_ : basic::resource_manager::LazyResourceManager
• resource_options_ : basic::resource_manager::LazyResourceManager
• resource_options_tag : basic::resource_manager::ResourceConfiguration
• resource_tag : basic::resource_manager::ResourceConfiguration
• resource_tag_lists_ : basic::resource_manager::LazyResourceManager
• resource_tags_ : basic::resource_manager::LazyResourceManager
• ResourceConfigurationMap : basic::resource_manager::LazyResourceManager
• ResourceDescription : basic::resource_manager::fallback_configuration::NativeFallbackConfiguration
• ResourceJobMap : basic::resource_manager::LazyResourceManager
• ResourceLoaderFactory() : basic::resource_manager::ResourceLoaderFactory
• ResourceLoaderRegistrator() : basic::resource_manager::ResourceLoaderRegistrator< T >
• ResourceLocator() : basic::resource_manager::ResourceLocator
• ResourceLocatorFactory() : basic::resource_manager::ResourceLocatorFactory
• ResourceLocatorRegistrator() : basic::resource_manager::ResourceLocatorRegistrator< T >
• ResourceLocatorsMap : basic::resource_manager::LazyResourceManager
• ResourceManager() : basic::resource_manager::ResourceManager
• ResourceManagerCreatorsMap : basic::resource_manager::ResourceManagerFactory
• ResourceManagerFactory : basic::resource_manager::ResourceManagerCreator , basic::resource_manager::ResourceManagerFactory
• ResourceManagerRegistrator() : basic::resource_manager::ResourceManagerRegistrator< T >
• ResourceOptions() : basic::resource_manager::ResourceOptions
• ResourceOptionsCreatorMap : basic::resource_manager::ResourceOptionsFactory
• ResourceOptionsFactory() : basic::resource_manager::ResourceOptionsFactory
• ResourceOptionsMap : basic::resource_manager::LazyResourceManager
• ResourceOptionsRegistrator() : basic::resource_manager::ResourceOptionsRegistrator< T >
• resources_ : basic::resource_manager::ResourceManager
• ResourcesMap : basic::resource_manager::ResourceManager
• ResourceTagsMap : basic::resource_manager::LazyResourceManager
• rest_expression_token() : numeric::expression_parser::ArithmeticASTRestExpression
• rest_expression_token_ : numeric::expression_parser::ArithmeticASTRestExpression
• rest_term_token() : numeric::expression_parser::ArithmeticASTRestTerm
• rest_term_token_ : numeric::expression_parser::ArithmeticASTRestTerm
• restoreState() : numeric::random::mt19937_RG , numeric::random::RandomGenerator , numeric::random::standard_RG , numeric::random::uniform_RG
• restrict_access : options_class.Option , utility::options::Option
• restricted_access_ : utility::options::Option
• restrictions_ : utility::tag::XMLSchemaRestriction
• ResTyp : PDBInfo.PDB
• restype : loadPDB.new_PDBatom , loadPDB.PDBatom , loadPDB.PDBres
• restype_info : app.pyrosetta_toolkit.modules.definitions.restype_definitions.definitions
• restype_var : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• restypes : app.pyrosetta_toolkit.modules.definitions.restype_definitions.definitions
• result : app.pyrosetta_toolkit.window_modules.vicinity_options.vicinity_window.vicinityrelaxwindow , basic::ExecutionResult
• result_ : PerformanceBenchmark
• result_type : numeric::random::RandomGenerator
• results : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• ret_centers() : app.pyrosetta_toolkit.modules.calibur.calibur
• ret_energy_string() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_loop_energy() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_loop_energy_by_type() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_loop_neighbor_energy() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_loop_neighbor_energy_by_type() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_n_hbonds() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_neighbors() : app.pyrosetta_toolkit.modules.calibur.calibur
• ret_pose_number() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_random_num_neighbors() : app.pyrosetta_toolkit.modules.calibur.calibur
• ret_Refs() : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• ret_residue_energy() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_threshold() : app.pyrosetta_toolkit.modules.calibur.calibur
• ret_total_unweighted_residue_energy() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• ret_total_weighted_residue_energy() : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• return_file_callback() : utility::Inline_File_Provider_Hook
• return_loaded_pose() : app.pyrosetta_toolkit.window_main.IO.GUIInput.GUIInput
• return_region_from_entry() : app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• returnType : tools.CppParser.CppFunction
• reverse_iterator : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• ReverseIterator : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• reversesort : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable
• rg : numeric::random::RandomGenerator
• rho : decision_function , Solver::SolutionInfo , svm_model
• right() : numeric::ClusteringTreeNode
• right_ : numeric::ClusteringTreeNode
• right_child() : numeric::kdtree::KDNode
• right_child_ : numeric::kdtree::KDNode
• right_justified() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• right_justify() : ObjexxFCL::Cstring , ObjexxFCL::Fstring
• right_multiply_by() : numeric::Quaternion< typename > , numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• right_multiply_by_inverse_of() : numeric::Quaternion< typename >
• right_multiply_by_transpose() : numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• right_padding_width : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable
• right_transform_by() : numeric::BodyPosition< typename >
• right_transform_by_inverse_of() : numeric::BodyPosition< typename >
• RingDetection() : utility::graph::RingDetection< Graph >
• RingEdgeAnnotationVisitor() : utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >
• rings_ : utility::graph::RingDetection< Graph >
• RingSizeVisitor() : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• RmLoopButton : app.pyrosetta_toolkit.window_main.frames.InputFrame.InputFrame
• rms_ : CAtrace
• rmsd_load_pose() : app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
• rmsd_option_tracer() : app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
• RmsData() : numeric::model_quality::RmsData
• rmsdOPT : app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
• rmsdOPTIONS : app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
• rmsdP : app.pyrosetta_toolkit.window_main.frames.SimpleAnalysisFrame.SimpleAnalysisFrame
• rmses : FragmentAssemblyMover
• roc_curve() : numeric::RocCurve
• roc_curve_ : numeric::RocCurve
• roc_point_vector_ : numeric::RocCurve
• RocCurve() : numeric::RocCurve
• RocPoint() : numeric::RocPoint
• roll() : myMC
• rollmove_to_inverse_C2_symmetry() : zinc2_homodimer_setup
• root() : numeric::kdtree::KDTree , utility::vectorL< SSize, T, A >
• root1() : numeric::Polynomial_1d
• root1_ : numeric::Polynomial_1d
• root2() : numeric::Polynomial_1d
• root2_ : numeric::Polynomial_1d
• root_ : numeric::kdtree::KDTree
• root_context : yaml.emitter.Emitter
• root_module : binder::Config
• rosetta_libs : BuildPackagedBindings.ModuleBuilder
• rosetta_read_state : app.pyrosetta_toolkit.window_modules.ligand_ncaa_ptm_manager.ligand_ncaa_ptm_manager.Properties
• rosetta_script_ : XMLParseBenchmark
• rot() : numeric::xyzTransform< typename >
• rot_deg() : numeric::xyzTransform< typename >
• rotamer_energy : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• rotamer_probabilty : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• rotamer_prot_stats_ : PhProtocol
• rotate_info_ : LigandDockBench
• Rotation : numeric::BodyPosition< typename >
• rotation_angle() : numeric::xyzTransform< typename >
• rotation_angle_degrees() : numeric::xyzTransform< typename >
• rotation_axis : numeric::xyzMatrix< typename > , numeric::xyzTransform< typename >
• rotation_cosine() : numeric::xyzTransform< typename >
• rotation_matrix() : basic::sampling::orientations::Quaternion , numeric::HomogeneousTransform< T > , numeric::xyzMatrix< typename > , numeric::xyzVector< typename >
• rotation_sine() : numeric::xyzTransform< typename >
• rotid_ : ScoreFragInfo
• rotidx_ : ScoreFragInfo
• rotlist_ : numeric::UniformRotationSampler
• rotsets_ : InteractionGraphPerformanceBenchmark
• rounds : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• rounds_entry : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• rounds_label : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• rounds_options_menu : app.pyrosetta_toolkit.window_main.menu.Menus
• RoundVar : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• row : app.pyrosetta_toolkit.modules.prettytable.prettytable_test.BuildEquivelanceTest , numeric::xyzMatrix< typename >
• row1 : PyMOLPyRosettaServer.Matrix
• row2 : PyMOLPyRosettaServer.Matrix
• row3 : PyMOLPyRosettaServer.Matrix
• row_list_ : basic::database::insert_statement_generator::InsertGenerator
• row_x() : numeric::xyzMatrix< typename >
• row_y() : numeric::xyzMatrix< typename >
• row_z() : numeric::xyzMatrix< typename >
• rowcount : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable
• RowData() : basic::database::insert_statement_generator::RowData< T >
• RowDataBase() : basic::database::insert_statement_generator::RowDataBase
• RowPointers() : numeric::RowPointers< T >
• rows : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable , numeric::xyzMatrix< typename >
• rows_constructor() : numeric::xyzMatrix< typename >
• RowsAtCompileTime : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• RowsPointer() : numeric::RowsPointer< T >
• RowVectors() : numeric::RowVectors< T >
• rstrip() : ObjexxFCL::Fstring
• rstrip_whitespace() : ObjexxFCL::Fstring
• rstripped() : ObjexxFCL::Fstring
• rstripped_whitespace() : ObjexxFCL::Fstring
• rt6() : numeric::xyzTransform< typename >
• rt_min : app.surface_docking.movers.FullAtomRelax
• Rule : numeric::CalculatorParser
• RuleS : numeric::CalculatorParser
• RuleX : numeric::CalculatorParser
• run() : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window , ConsensusFragmentMover , DatabaseIOBenchmark , DesignBenchmark , DockFragmentsMover , DockingBenchmark< dock, TScale > , FastRelaxPerformanceBenchmark , FragmentAssemblyMover , InteractionGraphPerformanceBenchmark , LigandDockBenchmark , LigandDockScriptBenchmark , MinimizerBenchmark< sft, TScale > , OptionCollectionBenchmark , PDB_IOBenchmark , PerformanceBenchmark , ResidueTypeBenchmark , ScoreBenchmark , ScoreEachBenchmark , ScoreFragmentSetMover , ShearMoverBenchmark , SmallMoverBenchmark , SolutionRescoreMover , XMLParseBenchmark
• run_calibur() : app.pyrosetta_toolkit.modules.calibur.calibur
• run_decomp_svd() : basic::svd::SVD_Solver
• run_design_breakdown() : app.pyrosetta_toolkit.window_main.menu.Menus
• run_graft() : app.pyrosetta_toolkit.modules.protocols.GraftingProtocols.GraftMoverWindow
• run_long_ranged_two_body_energy() : ScoreEachBenchmark
• run_one_body_energy() : ScoreEachBenchmark
• run_outputs() : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• run_protocol() : app.pyrosetta_toolkit.modules.protocols.ProtocolBaseClass.ProtocolBaseClass
• run_score_svd_on_matrix() : basic::svd::SVD_Solver
• run_score_svd_without_solving() : basic::svd::SVD_Solver
• run_short_ranged_two_body_energy() : ScoreEachBenchmark
• run_solve_svd() : basic::svd::SVD_Solver
• runFixPDB() : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• runfixPDBWindow() : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• runtime_libpaths : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• RuntimeError() : fmt::internal::RuntimeError