Here is a list of all file members with links to the files they belong to:

- s -

• S_ISDIR : file_sys_util.cc
• sample_torsions() : test_carbohydrate_scoring.cc
• sat_allow : exposed_strand_finder.cc
• save_feature() : rna_features.cc
• save_per_residue_scores() : score_aln.cc , score_aln2.cc
• scaffold_pdb : zinc1_homodimer_setup.cc
• schar : Svm.cc
• Score_ : performance_benchmark.cc
• Score_analytic_etable_fa_atr_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_intra_atr_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_intra_rep_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_intra_sol_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_rep_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_sol_ : ScoreAnalyticEtable.bench.hh
• Score_cart_bonded_ : ScoreEach.bench.hh
• Score_cbeta_ : ScoreEach.bench.hh
• Score_cbeta_smooth_ : ScoreEach.bench.hh
• Score_cen_env_smooth_ : ScoreEach.bench.hh
• Score_cen_pair_smooth_ : ScoreEach.bench.hh
• Score_cenpack_ : ScoreEach.bench.hh
• Score_cenpack_smooth_ : ScoreEach.bench.hh
• Score_ch_bond_ : ScoreEach.bench.hh
• Score_chainbreak_ : ScoreEach.bench.hh
• Score_co_ : ScoreEach.bench.hh
• Score_distance_chainbreak_ : ScoreEach.bench.hh
• Score_dslf_ca_dih_ : ScoreEach.bench.hh
• Score_dslf_cbs_ds_ : ScoreEach.bench.hh
• Score_dslf_cs_ang_ : ScoreEach.bench.hh
• Score_dslf_fa13_ : ScoreEach.bench.hh
• Score_dslf_ss_dih_ : ScoreEach.bench.hh
• Score_dslf_ss_dst_ : ScoreEach.bench.hh
• Score_e_pH_ : ScoreEach.bench.hh
• Score_env_ : ScoreEach.bench.hh
• Score_envsmooth_ : ScoreEach.bench.hh
• Score_fa_atr_ : ScoreEach.bench.hh
• Score_fa_cust_pair_dist_ : ScoreEach.bench.hh
• Score_fa_dun_ : ScoreEach.bench.hh
• Score_fa_dun_dev_ : ScoreEach.bench.hh
• Score_fa_dun_rot_ : ScoreEach.bench.hh
• Score_fa_dun_semi_ : ScoreEach.bench.hh
• Score_fa_elec_ : ScoreEach.bench.hh
• Score_fa_intra_atr_ : ScoreEach.bench.hh
• Score_fa_intra_rep_ : ScoreEach.bench.hh
• Score_fa_intra_sol_ : ScoreEach.bench.hh
• Score_fa_pair_ : ScoreEach.bench.hh
• Score_fa_pair_aro_aro_ : ScoreEach.bench.hh
• Score_fa_pair_aro_pol_ : ScoreEach.bench.hh
• Score_fa_pair_pol_pol_ : ScoreEach.bench.hh
• Score_fa_rep_ : ScoreEach.bench.hh
• Score_fa_sol_ : ScoreEach.bench.hh
• Score_gauss_ : ScoreEach.bench.hh
• Score_gb_elec_ : ScoreEach.bench.hh
• Score_h2o_hbond_ : ScoreEach.bench.hh
• Score_hbond_bb_sc_ : ScoreEach.bench.hh
• Score_hbond_lr_bb_ : ScoreEach.bench.hh
• Score_hbond_lr_bb_sc_ : ScoreEach.bench.hh
• Score_hbond_sc_ : ScoreEach.bench.hh
• Score_hbond_sr_bb_ : ScoreEach.bench.hh
• Score_hbond_sr_bb_sc_ : ScoreEach.bench.hh
• Score_hs_pair_ : ScoreEach.bench.hh
• Score_linear_chainbreak_ : ScoreEach.bench.hh
• Score_lk_costheta_ : ScoreEach.bench.hh
• Score_lk_nonpolar_ : ScoreEach.bench.hh
• Score_lk_polar_ : ScoreEach.bench.hh
• Score_mm_bend_ : ScoreEach.bench.hh
• Score_mm_lj_intra_atr_ : ScoreEach.bench.hh
• Score_mm_lj_intra_rep_ : ScoreEach.bench.hh
• Score_mm_stretch_ : ScoreEach.bench.hh
• Score_mm_twist_ : ScoreEach.bench.hh
• Score_neigh_vect_ : ScoreEach.bench.hh
• Score_occ_sol_exact_ : ScoreEach.bench.hh
• Score_occ_sol_fitted_ : ScoreEach.bench.hh
• Score_occ_sol_fitted_onebody_ : ScoreEach.bench.hh
• Score_omega_ : ScoreEach.bench.hh
• Score_overlap_chainbreak_ : ScoreEach.bench.hh
• Score_p_aa_ : ScoreEach.bench.hh
• Score_p_aa_pp_ : ScoreEach.bench.hh
• Score_pack_stat_ : ScoreEach.bench.hh
• Score_pair_ : ScoreEach.bench.hh
• Score_pro_close_ : ScoreEach.bench.hh
• Score_rama2b_ : ScoreEach.bench.hh
• Score_rama_ : ScoreEach.bench.hh
• Score_ref_ : ScoreEach.bench.hh
• Score_ref_nc_ : ScoreEach.bench.hh
• Score_rg_ : ScoreEach.bench.hh
• Score_rsigma_ : ScoreEach.bench.hh
• Score_sa_ : ScoreEach.bench.hh
• Score_sheet_ : ScoreEach.bench.hh
• Score_ss_pair_ : ScoreEach.bench.hh
• Score_unfolded_ : ScoreEach.bench.hh
• Score_vdw_ : ScoreEach.bench.hh
• Score_yhh_planarity_ : ScoreEach.bench.hh
• ScoreFnType : Minimizer.bench.hh
• sequence_tolerance_main() : sequence_tolerance.cc
• sequences_from_cmd_line() : score_aln.cc
• set_begin() : _core__by_hand_beginning.cc , _utility__by_hand_beginning.cc
• set_end() : _core__by_hand_beginning.cc , _utility__by_hand_beginning.cc
• set_gaussian_stdev() : recces_turner.cc
• set_option() : _basic__by_hand_beginning.cc , _core__by_hand_beginning.cc
• set_pep_cst() : pepspec_anchor_dock.cc
• set_pep_csts() : pepspec.cc
• set_pyexit_callback() : _utility__by_hand_beginning.cc
• set_repr() : _core__by_hand_beginning.cc , _utility__by_hand_beginning.cc
• set_throw_on_next_assertion_failure() : backtrace.cc , backtrace.hh
• setup_alignment_map() : rna_thread.cc
• setup_ca_constraints() : ensemble_generator_score12_sidechain_ver2.cc , minimize_with_cst.cc
• setup_mask() : rna_thread.cc
• setup_movers() : ensemble_generator_score12_sidechain_ver2.cc
• setup_rna_minimizer() : cs_rosetta_rna.cc
• setup_segment_insert() : remodel.cc
• setup_tf() : sequence_recovery.cc
• SFT_dfpmin : Minimizer.bench.hh
• SFT_dfpmin_armijo : Minimizer.bench.hh
• SFT_dfpmin_armijo_nonmonotone : Minimizer.bench.hh
• ShearMover_ : performance_benchmark.cc
• sheet_start : homodimer_maker.cc
• sheet_stop : homodimer_maker.cc
• shift_angles() : pepspec_anchor_dock.cc
• show() : mp_span_from_pdb.cc
• SIGMOID : Svm.hh
• sigmoid_predict() : Svm.cc
• sigmoid_train() : Svm.cc
• SizeSet : supercharge.cc
• skip_hd_docking : homodimer_design.cc
• slice_ellipsoid_envelope() : swa_rna_util.cc
• slice_sample_res_and_surrounding() : swa_rna_util.cc
• SMALL : kinematic_closure_helpers.cc
• SMALL_ENOUGH : sturm.hh
• SmallMover_ : performance_benchmark.cc
• solve_c_svc() : Svm.cc
• solve_epsilon_svr() : Svm.cc
• solve_nu_svc() : Svm.cc
• solve_nu_svr() : Svm.cc
• solve_one_class() : Svm.cc
• spanfile_for_each_chain() : mp_span_from_pdb.cc
• spanfile_from_pdb() : mp_span_from_pdb.cc
• spirit_namespace : json_spirit_reader_template.h
• SQR : lmmin.cc
• ss_ds_ts_assign_test() : rna_design.cc
• ssize_t : types.hh
• start_index : exposed_strand_finder.cc
• statistics() : design_contrast_and_statistic.cc
• status() : .pymolSurfaceMode.py
• std_vector_at() : _utility__by_hand_beginning.cc
• std_vector_begin() : _utility__by_hand_beginning.cc
• std_vector_end() : _utility__by_hand_beginning.cc
• std_vector_len() : _utility__by_hand_beginning.cc
• std_vector_repr() : _utility__by_hand_beginning.cc
• std_vector_reserve() : _utility__by_hand_beginning.cc
• std_vector_resize() : _utility__by_hand_beginning.cc
• std_vector_set() : _utility__by_hand_beginning.cc
• std_vector_str() : _utility__by_hand_beginning.cc
• stepwise_monte_carlo() : stepwise.cc
• store_energies() : ddg_benchmark.cc
• strand_span : exposed_strand_finder.cc
• strerror_r() : format.cc
• strerror_s() : format.cc
• String : remodel.cc
• struct_file : homodimer_maker.cc , exposed_strand_finder.cc
• sum() : ddg_benchmark.cc
• superchargeOP : supercharge.cc
• superimpose() : ensemble_analysis.cc
• superimpose_pdb() : rna_graft.cc
• svm_binary_svc_probability() : Svm.cc
• svm_check_parameter() : Svm.hh , Svm.cc
• svm_check_probability_model() : Svm.hh , Svm.cc
• svm_cross_validation() : Svm.cc , Svm.hh
• svm_destroy_param() : Svm.cc , Svm.hh
• svm_free_and_destroy_model() : Svm.cc , Svm.hh
• svm_free_model_content() : Svm.cc , Svm.hh
• svm_get_labels() : Svm.cc , Svm.hh
• svm_get_nr_class() : Svm.hh , Svm.cc
• svm_get_nr_sv() : Svm.cc , Svm.hh
• svm_get_sv_indices() : Svm.cc , Svm.hh
• svm_get_svm_type() : Svm.hh , Svm.cc
• svm_get_svr_probability() : Svm.hh , Svm.cc
• svm_group_classes() : Svm.cc
• svm_load_model() : Svm.cc , Svm.hh
• svm_predict() : Svm.cc , Svm.hh
• svm_predict_probability() : Svm.hh , Svm.cc
• svm_predict_values() : Svm.cc , Svm.hh
• svm_print_string : Svm.cc
• svm_save_model() : Svm.hh , Svm.cc
• svm_set_print_string_function() : Svm.hh , Svm.cc
• svm_svr_probability() : Svm.cc
• svm_train() : Svm.cc , Svm.hh
• svm_train_one() : Svm.cc
• svm_type_table : Svm.cc
• swa_rna_cluster() : swa_rna_main.cc
• swa_rna_sample() : swa_rna_main.cc
• swap() : Svm.cc