Here is a list of all file members with links to the files they belong to:

- r -

• rad2deg : bridgeObjects.cc
• randomly_open_pose_loop() : test_CCD_loop_closure.cc
• RBF : Svm.hh
• read_in_flexible_regions() : incorporate_motifs.cc
• read_in_mutations() : ddg_monomer.cc
• read_input_weights() : ensemble_analysis.cc , fast_clustering.cc
• read_native_sequence_for_entity_elements() : mpi_msd.cc
• read_pose() : mp_span_from_pdb.cc
• read_structures() : ensemble_analysis.cc , fast_clustering.cc
• read_thickness() : mp_span_from_pdb.cc
• ReadCAsFromPDB() : denovo_density.cc
• readline() : Svm.cc
• readPDBcoords() : density_tools.cc
• real_command_line_argc : performance_benchmark.cc
• real_command_line_argv : performance_benchmark.cc
• rebuild_test() : swa_protein_main.cc
• recenter_with_missing() : ca_to_allatom.cc
• reduce_fa_rep() : ensemble_generator_score12_sidechain_ver2.cc , minimize_with_cst.cc
• register_options() : rotamer_recovery.cc , ensemble_analysis.cc , fast_clustering.cc , fragment_picker.cc , idealize_jd2.cc , r_noe_assign.cc , remodel.cc , struc_set_fragment_picker.cc
• remark_vector_append() : _io__by_hand_ending.cc
• remark_vector_at() : _io__by_hand_ending.cc
• remark_vector_begin() : _io__by_hand_ending.cc
• remark_vector_end() : _io__by_hand_ending.cc
• remark_vector_len() : _io__by_hand_ending.cc
• remark_vector_repr() : _io__by_hand_ending.cc
• remark_vector_reserve() : _io__by_hand_ending.cc
• remark_vector_resize() : _io__by_hand_ending.cc
• remark_vector_set() : _io__by_hand_ending.cc
• remote_set_up() : .pymolSurfaceMode.py
• remove_dashes() : rna_thread.cc
• remove_pep_res() : pepspec.cc
• repack_test() : beta_peptide_modeling.cc
• repackmin_iterations : zinc2_homodimer_design.cc
• restore_hack() : fast_gap.cc , full_length_model.cc
• results_filename : performance_benchmark.cc
• rhiju_pdbstats() : rna_features.cc
• RmsfMoverCOP : ensemble_analysis.cc
• RmsfMoverOP : ensemble_analysis.cc
• rna_build_helix_test() : rna_helix.cc
• rna_denovo_test() : rna_denovo.cc
• rna_design_test() : rna_design.cc
• rna_features_from_pose() : rna_features.cc
• rna_fullatom_minimize_test() : rna_minimize.cc
• rna_sample_virtual_sugar() : swa_rna_main.cc
• rna_score_test() : rna_score.cc
• rna_sequence_recovery_metrics() : rna_design.cc
• rna_suitename() : rna_suitename.cc
• rna_superimpose_and_graft_test() : rna_graft.cc
• rna_thread_test() : rna_thread.cc
• rot : homodimer_design.cc
• round() : ensemble_analysis.cc
• run() : fast_clustering.cc , r_noe_assign.cc , struc_set_fragment_picker.cc , ensemble_analysis.cc
• run_mc() : ensemble_generator_score12_sidechain_ver2.cc
• run_old() : r_noe_assign.cc
• run_pep_prep() : pepspec_anchor_dock.cc
• RunPepSpec() : pepspec.cc
• runtime_assert : exit.hh
• runtime_assert_msg : exit.hh
• runtime_assert_string_msg : exit.hh