Here is a list of all file members with links to the files they belong to:
- m -
- MacAppIconData
: boinc_mac_app_icon.hh
- main()
: performance_benchmark.cc
, design_contrast_and_statistic.cc
, contactMap.cc
, score_jd2.cc
, fix_alignment_to_match_pdb.cc
, mr_protocols.cc
, rna_helix.cc
, rna_predict_chem_map.cc
, CstfileToTheozymePDB.cc
, rna_suitename.cc
, rna_thread.cc
, full_length_model.cc
, enzyme_design.cc
, revert_design_to_native.cc
, rosetta_scripts.cc
, extract_pdbs.cc
, rosettaDNA.cc
, exposed_strand_finder.cc
, antibody.cc
, partial_thread.cc
, cs_rosetta_rna.cc
, homodimer_design.cc
, homodimer_maker.cc
, rna_cluster.cc
, ca_to_allatom.cc
, UBQ_E2_thioester.cc
, score_aln.cc
, rna_database.cc
, UBQ_Gp_CYD-CYD.cc
, UBQ_Gp_LYX-Cterm.cc
, rna_denovo.cc
, doug_dock_design_min_mod2_cal_cal.cc
, FloppyTail.cc
, ensemble_analysis.cc
, antibody_CR_paratope.cc
, score_aln2.cc
, rna_extract.cc
, sequence_tolerance.cc
, sewing_hasher.cc
, rna_minimize.cc
, swa_protein_main.cc
, swa_rna_main.cc
, super_aln.cc
, rna_score.cc
, swa_rna_util.cc
, stepwise.cc
, FiberDiffractionFreeSet.cc
, struc_set_fragment_picker.cc
, surface_docking.cc
, antibody_graft.cc
, template_features.cc
, BuildPeptide.cc
, SymDock.cc
, vip.cc
, FlexPepDocking.cc
, optE_parallel.cc
, torsional_potential_corrections.cc
, validate_silent.cc
, fragment_picker.cc
, test_C-terminal_conjugation.cc
, test_carbohydrate_scoring.cc
, idealize_jd2.cc
, test_CarbohydrateInfo.cc
, test_CCD_loop_closure.cc
, rotamer_recovery.cc
, fast_clustering.cc
, antibody_H3.cc
, coupled_moves.cc
, AnchoredDesign.cc
, test_non-canonical_connectivities.cc
, test_RingConformationMover.cc
, AnchoredPDBCreator.cc
, binder.cpp
, simple_cycpep_predict.cc
, AnchorFinder.cc
, validate_database.cc
, antibody_legacy.cc
, DARC.cc
, extract_atomtree_diffs.cc
, ligand_dock.cc
, make_ray_files.cc
, ligand_rpkmin.cc
, select_best_unique_ligand_poses.cc
, InterfaceAnalyzer.cc
, identify_cdr_clusters.cc
, theta_ligand.cc
, loopmodel.cc
, mg_modeler.cc
, ddg_monomer.cc
, gen_apo_grids.cc
, gen_lig_grids.cc
, packing_angle.cc
, ensemble_generator_score12_sidechain_ver2.cc
, match.cc
, mp_dock.cc
, minimize_with_cst.cc
, mp_dock_setup.cc
, mp_mutate_relax.cc
, ddg_benchmark.cc
, AbinitioRelax.cc
, PeptideDeriver.cc
, snugdock.cc
, beta_peptide_modeling.cc
, mp_range_relax.cc
, mp_span_from_pdb.cc
, fixbb.cc
, mp_symdock.cc
, mp_transform.cc
, backrub.cc
, mpi_msd.cc
, mp_viewer.cc
, membrane_abinitio2.cc
, pmut_scan_parallel.cc
, minimize.cc
, minimize_ppi.cc
, per_residue_energies.cc
, minirosetta.cc
, rna_design.cc
, extract_motifs.cc
, incorporate_motifs.cc
, sequence_recovery.cc
, make_rot_lib.cc
, MakeRotLib.cc
, minirosetta_graphics.cc
, supercharge.cc
, UnfoldedStateEnergyCalculator.cc
, r_noe_assign.cc
, zinc1_homodimer_design.cc
, hbs_design.cc
, oop_design.cc
, batch_distances.cc
, residue_energy_breakdown.cc
, rna_graft.cc
, rna_features.cc
, recces_turner.cc
, nucleobase_sample_around.cc
, erraser_minimizer.cc
, remodel.cc
, relax.cc
, pocket_suggest_target_residues_by_ddg.cc
, pocket_relax.cc
, pocket_measure.cc
, make_exemplar.cc
, pH_protocol.cc
, pepspec_anchor_dock.cc
, pepspec.cc
, cluster.cc
, zinc1_homodimer_setup.cc
, peptoid_design.cc
, packstat.cc
, zinc2_homodimer_design.cc
, combine_silent.cc
, zinc2_homodimer_setup.cc
, zinc_heterodimer_design.cc
, score.cc
, cluster_alns.cc
, docking_prepack_protocol.cc
, docking_protocol.cc
, fast_gap.cc
, denovo_density.cc
, density_tools.cc
- main_local()
: struc_set_fragment_picker.cc
- make_1mer_frags()
: pepspec.cc
- make_ala_interface
: homodimer_design.cc
- make_fragments()
: torsional_potential_corrections.cc
- make_frags()
: pepspec.cc
- make_scorefxn()
: LigandDockScript.bench.hh
- make_sequence_change()
: pepspec.cc
, pepspec_anchor_dock.cc
- MakeRelativePathsInFlagsAbsolute()
: .ycm_extra_conf.py
- Malloc
: Svm.cc
- match1
: zinc2_homodimer_setup.cc
- match2
: zinc2_homodimer_setup.cc
- match_main()
: match.cc
- MatchPosition
: zinc_heterodimer_design.cc
- Matrix
: rna_database.cc
, rna_features.cc
, rna_thread.cc
, rna_graft.cc
, swa_protein_main.cc
, nucleobase_sample_around.cc
, swa_rna_main.cc
, swa_rna_util.cc
- max()
: Svm.cc
- MAX
: lmmin.cc
- max_E_allow
: exposed_strand_finder.cc
- max_line_len
: Svm.cc
- max_neighbors
: exposed_strand_finder.cc
- MAX_ORDER
: sturm.hh
- max_RMSD
: exposed_strand_finder.cc
- MAX_SOLN
: sturm.hh
- MAXCAVN
: gen_apo_grids.cc
- MAXPOW
: sturm.hh
- MAXRESD
: gen_apo_grids.cc
- maybe_throw_on_next_assertion_failure()
: backtrace.hh
, backtrace.cc
- MC_run()
: recces_turner.cc
- me
: .pymolSurfaceMode.py
- measure_rotamer_recovery()
: sequence_recovery.cc
- measure_sequence_recovery()
: sequence_recovery.cc
- metal
: zinc_heterodimer_design.cc
- mg_modeler_test()
: mg_modeler.cc
- min()
: Svm.cc
- MIN
: lmmin.cc
- minimize_test()
: beta_peptide_modeling.cc
- minimize_with_constraints()
: ensemble_generator_score12_sidechain_ver2.cc
, minimize_with_cst.cc
- Minimizer_dfpmin_
: performance_benchmark.cc
- MinimizerBenchmark_dfpmin
: Minimizer.bench.hh
- MinimizerBenchmark_dfpmin_armijo
: Minimizer.bench.hh
- MinimizerBenchmark_dfpmin_armijo_
: performance_benchmark.cc
- MinimizerBenchmark_dfpmin_armijo_nonmonotone
: Minimizer.bench.hh
- MinimizerBenchmark_dfpmin_armijo_nonmonotone_
: performance_benchmark.cc
- MINNRES
: gen_apo_grids.cc
- misc
: Tag.cc
- MoreHelp()
: binder.cpp
- motif_distances()
: extract_motifs.cc
- MPI_ONLY
: assert.hh
, mpi_util.cc
- multiclass_probability()
: Svm.cc
- mutate_random_residue()
: pepspec.cc
- mutate_residue()
: swa_rna_util.cc
- mutate_residues_wrapper()
: swa_rna_util.cc
- mutate_to_ala()
: torsional_potential_corrections.cc
- mutations
: ddg_monomer.cc
- MY__has_include
: backtrace.hh
- my_main()
: recces_turner.cc
, rosetta_scripts.cc
, rna_predict_chem_map.cc
, rna_denovo.cc
, mg_modeler.cc
, swa_rna_main.cc
, rna_suitename.cc
, rna_design.cc
, rna_thread.cc
, swa_rna_util.cc
, membrane_abinitio2.cc
, stepwise.cc
, pepspec.cc
, rna_minimize.cc
, rna_graft.cc
, rna_cluster.cc
, beta_peptide_modeling.cc
, rna_database.cc
, mr_protocols.cc
, rna_score.cc
, cs_rosetta_rna.cc
, erraser_minimizer.cc
, rna_features.cc
, rosettaDNA.cc
, docking_protocol.cc
, coupled_moves.cc
, swa_protein_main.cc
, rna_helix.cc
, backrub.cc
, nucleobase_sample_around.cc
, rna_extract.cc
- MYSQL_ONLY
: util.hh
1.8.7
