Here is a list of all namespace members with links to the namespace documentation for each member:

- j -

• j : basic::options::OptionKeys::frags , frags
• jacobi_rotation() : numeric
• james : basic::options::OptionKeys::james , james
• james_debug : options
• jd : app::surface_docking::surface_docking , demo::D060_Folding , docking , loops , test::Workshop7test , test::Workshop8test
• jd1 : app::surface_docking::surface_docking
• JD2 : basic
• jd2 : basic::options::OptionKeys::jd2 , jd2
• JD2_INIT_MOVER : basic
• JD2_OUTPUT : basic
• JD2_SILENT_OUTPUTTER : basic
• jdist_rerun() : abinitio , basic::options::OptionKeys::abinitio
• jmp_arr : test::T600_Docking
• job_definition_file : basic::options::OptionKeys::in::file , in::file
• JOB_FAILURE_TAG : basic::mpi
• JOB_GO_TAG : basic::mpi
• job_output : demo::D060_Folding , demo::D070_Refinement , demo::D080_Loop_modeling , demo::D100_Docking , demo::D110_DNA_interface , demo::D120_Ligand_interface
• job_queue_ID : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• JOB_SUCCESS_TAG : basic::mpi
• jobdist_miscfile_ext : basic::options::OptionKeys::run , run
• jobname : basic::options::OptionKeys::lh , lh
• JobOptionsCOP : basic::resource_manager
• JobOptionsOP : basic::resource_manager
• Jobs : BuildBindings
• jobs : demo::D060_Folding , demo::D070_Refinement , demo::D080_Loop_modeling , demo::D100_Docking , demo::D110_DNA_interface , demo::D120_Ligand_interface
• JobTag : basic::resource_manager
• JobTuple : BuildPackagedBindings
• join : extract_scores_and_constraints , utility
• join2 : extract_scores_and_constraints
• jran : basic::options::OptionKeys::run , run
• jscore_evaluator : basic::options::OptionKeys::evaluation , evaluation
• json_file_name() : self-test , TestBindings
• JsonEmitterCOP : basic
• JsonEmitterOP : basic
• jump_change_frequency : basic::options::OptionKeys::rna::farna , rna::farna
• jump_database : basic::options::OptionKeys::rna::farna::db , rna::farna::db
• jump_lib : basic::options::OptionKeys::jumps , jumps
• jump_library_file : basic::options::OptionKeys::rna::farna , rna::farna
• jump_move : basic::options::OptionKeys::relax , relax
• jump_nr : basic::options::OptionKeys::evaluation , evaluation
• jump_num : make_symmdef_file_denovo , test::Workshop7test
• jump_point_pairs : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• jump_res : basic::options::OptionKeys::full_model , full_model
• jump_start : make_symmdef_file_denovo
• jump_stop : make_symmdef_file_denovo
• jumpcut_files : basic::options::OptionKeys::smhybrid , smhybrid
• jumping : basic::options::OptionKeys::cmiles::jumping , cmiles::jumping
• jumps : basic::options::OptionKeys::jumps , basic::options::OptionKeys::resample , jumps , resample
• just_calc_rmsd : basic::options::OptionKeys::score , score
• just_min_after_mutation_frequency : basic::options::OptionKeys::stepwise::monte_carlo , stepwise::monte_carlo