Here is a list of all namespace members with links to the namespace documentation for each member:

- e -

• E() : ObjexxFCL::format
• E2_residue : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• E2pdb : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• e_FirstDer : numeric::interpolation::spline
• e_Natural : numeric::interpolation::spline
• e_Periodic : numeric::interpolation::spline
• E_string : make_symmdef_file_denovo
• EA : aaaa
• EA_A : aaaa
• EA_B : aaaa
• easy_vip_acceptance : basic::options::OptionKeys::cp , cp
• edensity : basic::options::OptionKeys::edensity , edensity
• edensity_weight_for_sampling : basic::options::OptionKeys::lh , lh
• eggshell_dist : basic::options::OptionKeys::pocket_grid , pocket_grid
• eigenvalue_jacobi() : numeric
• eigenvector_jacobi() : numeric
• elec : app::surface_docking::surface_docking
• elec_context_maxburial : basic::options::OptionKeys::score , score
• elec_context_minburial : basic::options::OptionKeys::score , score
• elec_context_minstrength : basic::options::OptionKeys::score , score
• elec_die : basic::options::OptionKeys::score , score
• elec_group_extrafile : basic::options::OptionKeys::score , score
• elec_group_file : basic::options::OptionKeys::score , score
• elec_max_dis : basic::options::OptionKeys::score , score
• elec_max_threshold : basic::options::OptionKeys::motifs , motifs
• elec_min_dis : basic::options::OptionKeys::score , score
• elec_min_threshold : basic::options::OptionKeys::motifs , motifs
• elec_r_option : basic::options::OptionKeys::score , score
• elec_representative_cp : basic::options::OptionKeys::score , score
• elec_representative_cp_flip : basic::options::OptionKeys::score , score
• elec_sigmoidal_die : basic::options::OptionKeys::score , score
• elec_sigmoidal_die_D : basic::options::OptionKeys::score , score
• elec_sigmoidal_die_D0 : basic::options::OptionKeys::score , score
• elec_sigmoidal_die_S : basic::options::OptionKeys::score , score
• element_type_name() : utility::tag
• eliminate_weak_motifs : basic::options::OptionKeys::motifs , motifs
• emap : test::T200_Scoring , test::T220_AtomAtomPairEnergies , test::Workshop3test
• embedding : basic::options::OptionKeys::mp::visualize , mp::visualize
• emit() : yaml
• EmitterCOP : basic
• EmitterOP : basic
• empty : basic::options::OptionKeys::score , score
• enable_adapt_graft_cartesian() : antibody::design , basic::options::OptionKeys::antibody::design
• encode6bit() : utility
• encode_24_to_32() : utility
• end : basic::options::OptionKeys::cutoutdomain , cutoutdomain , ObjexxFCL
• end_bias() : abinitio , basic::options::OptionKeys::abinitio
• ends_with() : binder
• endswith() : utility
• ENERGIES_COPY : basic
• ENERGY_ENVPAIR_POTENTIAL : basic
• ENERGY_GRAPH_COPY : basic
• energycut : basic::options::OptionKeys::relax , relax
• enlarge_H_lj : basic::options::OptionKeys::chemical , chemical
• ens_variation : basic::options::OptionKeys::ddg , ddg
• ensemble1 : basic::options::OptionKeys::docking , docking
• ensemble2 : basic::options::OptionKeys::docking , docking
• enumerate : basic::options::OptionKeys::stepwise , stepwise
• enumerate_ligand_rotamers : basic::options::OptionKeys::match , match
• envhb : basic::options::OptionKeys::hotspot , hotspot
• envsmooth_zero_negatives : basic::options::OptionKeys::score , score
• enz_debug : basic::options::OptionKeys::enzdes , enzdes
• enz_loops_file : basic::options::OptionKeys::enzdes , enzdes
• enz_repack : basic::options::OptionKeys::enzdes , enzdes
• enz_score : basic::options::OptionKeys::enzdes , enzdes
• enzdes : basic::options::OptionKeys::enzdes , enzdes
• enzdes_out : basic::options::OptionKeys::jd2 , jd2
• epitope() : antibody::design , basic::options::OptionKeys::antibody::design
• epr_distance : basic::options::OptionKeys::constraints , constraints
• epsilon : basic::options::OptionKeys::pb_potential , pb_potential
• epsilon_start_val : mrlo
• epslon() : numeric::linear_algebra
• eq_tol() : numeric , ObjexxFCL
• equal() : ObjexxFCL , utility::pointer
• equal_by_epsilon() : numeric
• equal_dimensions() : ObjexxFCL
• equal_length() : numeric
• equali() : ObjexxFCL , utility::file
• erase_and_extract_exponent() : utility::json_spirit
• erfcc() : numeric::model_quality
• erfcx_y100() : numeric::statistics
• erraser : basic::options::OptionKeys::rna::farna::erraser , basic::options::OptionKeys::stepwise::rna , rna::farna::erraser , stepwise::rna
• errf() : numeric::statistics
• errfc() : numeric::statistics
• errfcx() : numeric::statistics
• errfi() : numeric::statistics
• Error() : basic
• esp_buffer_dist : basic::options::OptionKeys::pocket_grid , pocket_grid
• esp_protein_wt : basic::options::OptionKeys::fingerprint , fingerprint
• esp_surface_wt : basic::options::OptionKeys::fingerprint , fingerprint
• esp_weight : basic::options::OptionKeys::fingerprint , fingerprint
• EStrategy : zlib_stream
• etable_atom_pair_energies() : pyrosetta , src
• eucDistance() : numeric::kinematic_closure , numeric::kinematic_closure::radians
• euclid_bin_size : basic::options::OptionKeys::match , match
• euler_angles_binned : numeric::geometry::hashing
• euler_bin_size : basic::options::OptionKeys::match , match
• euler_equals : numeric::geometry::hashing
• euler_hash : numeric::geometry::hashing
• euler_tolerance : basic::options::OptionKeys::loodo , loodo
• eulerbin : numeric::geometry::hashing
• ev_map : basic::options::OptionKeys::cm , cm
• eval_intrares_elec_ST_only : basic::options::OptionKeys::score , score
• evalpoly() : numeric::kinematic_closure
• evaluate : basic::options::OptionKeys::jumps , jumps
• evaluate_max_seq_sep : basic::options::OptionKeys::constraints , constraints
• evaluation : basic::options::OptionKeys::evaluation , evaluation
• evolution : basic::options::OptionKeys::evolution , evolution
• ex1 : basic::options::OptionKeys::packing::ex1 , packing::ex1
• ex1aro : basic::options::OptionKeys::packing::ex1aro , packing::ex1aro
• ex1aro_exposed : basic::options::OptionKeys::packing::ex1aro_exposed , packing::ex1aro_exposed
• ex2 : basic::options::OptionKeys::packing::ex2 , packing::ex2
• ex2aro : basic::options::OptionKeys::packing::ex2aro , packing::ex2aro
• ex2aro_exposed : basic::options::OptionKeys::packing::ex2aro_exposed , packing::ex2aro_exposed
• ex3 : basic::options::OptionKeys::packing::ex3 , packing::ex3
• ex4 : basic::options::OptionKeys::packing::ex4 , packing::ex4
• ex_catalytic_rot : basic::options::OptionKeys::enzdes , enzdes
• exact_occ_include_Hbond_contribution : basic::options::OptionKeys::score , score
• exact_occ_pairwise : basic::options::OptionKeys::score , score
• exact_occ_pairwise_by_res : basic::options::OptionKeys::score , score
• exact_occ_radius_scaling : basic::options::OptionKeys::score , score
• exact_occ_self_res_no_occ : basic::options::OptionKeys::score , score
• exact_occ_skip_Hbonders : basic::options::OptionKeys::score , score
• exact_occ_split_between_res : basic::options::OptionKeys::score , score
• exclude() : exclude
• exclude_ala : basic::options::OptionKeys::willmatch , willmatch
• exclude_badrep_ddGs : basic::options::OptionKeys::optE , optE
• exclude_disallowed_virtuals() : exclude
• exclude_dna_dna : basic::options::OptionKeys::dna::specificity , dna::specificity
• exclude_file : basic::options::OptionKeys::cp , cp
• exclude_header_list : exclude
• exclude_homo : basic::options::OptionKeys::lh , lh
• exclude_homologs() : antibody , basic::options::OptionKeys::antibody
• exclude_homologs_cdr_cutoff() : antibody , basic::options::OptionKeys::antibody
• exclude_homologs_fr_cutoff() : antibody , basic::options::OptionKeys::antibody
• exclude_impls_() : exclude
• exclude_patches : basic::options::OptionKeys::chemical , chemical
• exclude_polar_atoms_by_charge_in_hsasa : basic::options::OptionKeys::sasa , sasa
• exclude_private_and_protected_members() : exclude
• exclude_res : basic::options::OptionKeys::cluster , cluster
• exclude_res1 : basic::options::OptionKeys::willmatch , willmatch
• exclude_res2 : basic::options::OptionKeys::willmatch , willmatch
• excluded_residues_from_rmsd : basic::options::OptionKeys::mc , mc
• exdna : basic::options::OptionKeys::packing::exdna , packing::exdna
• execute() : basic , build , BuildBindings , BuildPackagedBindings , pyrosetta::toolbox::adjust_library_path , self-test , TestBindings , toolbox::adjust_library_path
• existing_ft : test::T700_FoldTree
• exit() : utility , utility::options::OptionKeys::options
• exit_if_missing_heavy_atoms : basic::options::OptionKeys::run , run
• exit_on_bad_read : basic::options::OptionKeys::constraints , constraints
• expa2n2 : numeric::statistics
• expa2n2_length : numeric::statistics
• expand_loop_takeoff : basic::options::OptionKeys::stepwise::protein , stepwise::protein
• expand_motifs : basic::options::OptionKeys::motifs , motifs
• expand_st_chi2sampling : basic::options::OptionKeys::corrections::chemical , corrections::chemical
• expand_xforms() : numeric
• expire_after_rounds : basic::options::OptionKeys::lh , lh
• explicit_hydrogen_radii_set : basic::options::OptionKeys::sasa , sasa
• explicit_motif_score : basic::options::OptionKeys::mh , mh
• explicit_pdb_debug() : abinitio , basic::options::OptionKeys::abinitio
• export_only_low : basic::options::OptionKeys::cluster , cluster
• exportPDBSCORE() : app::pyrosetta_toolkit::modules::tools::output
• expresion_to_string() : binder
• ExpressionCOP : numeric::expression_parser
• ExpressionOP : numeric::expression_parser
• extend_eggshell : basic::options::OptionKeys::pocket_grid , pocket_grid
• extend_eggshell_dist : basic::options::OptionKeys::pocket_grid , pocket_grid
• extend_h3_before_modeling() : antibody , basic::options::OptionKeys::antibody
• extend_length : basic::options::OptionKeys::loops , loops
• extend_peptide : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• extended : basic::options::OptionKeys::loops , loops
• extended_beta : basic::options::OptionKeys::loops , loops
• extended_loop_file : basic::options::OptionKeys::loops , loops
• extended_pose : basic::options::OptionKeys::in::file , in::file
• extra_bodies : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• extra_eggshell_dist : basic::options::OptionKeys::pocket_grid , pocket_grid
• extra_frags_for_ss : basic::options::OptionKeys::jumps , jumps
• extra_improper_file : basic::options::OptionKeys::score , score
• extra_longer_names : amino_acids
• extra_min_jump_res : basic::options::OptionKeys::full_model , full_model
• extra_min_res : basic::options::OptionKeys::full_model , full_model
• extra_minimize_chi_res : basic::options::OptionKeys::rna::farna::minimize , rna::farna::minimize
• extra_minimize_res : basic::options::OptionKeys::rna::farna::minimize , rna::farna::minimize
• extra_patch_cen : basic::options::OptionKeys::in::file , in::file
• extra_patch_fa : basic::options::OptionKeys::in::file , in::file
• extra_res : basic::options::OptionKeys::in::file , in::file
• extra_res_batch_path : basic::options::OptionKeys::in::file , in::file
• extra_res_cen : basic::options::OptionKeys::in::file , in::file
• extra_res_database : basic::options::OptionKeys::in::file , in::file
• extra_res_database_mode : basic::options::OptionKeys::in::file , in::file
• extra_res_database_resname_list : basic::options::OptionKeys::in::file , in::file
• extra_res_fa : basic::options::OptionKeys::in::file , in::file
• extra_res_mmCIF : basic::options::OptionKeys::in::file , in::file
• extra_res_mol : basic::options::OptionKeys::in::file , in::file
• extra_res_path : basic::options::OptionKeys::in::file , in::file
• extra_res_pq_schema : basic::options::OptionKeys::in::file , in::file
• extra_rot_lib_path : basic::options::OptionKeys::in::file , in::file
• extra_rottrial : basic::options::OptionKeys::docking , docking
• extra_score : basic::options::OptionKeys::evaluation , evaluation
• extra_score_column : basic::options::OptionKeys::evaluation , evaluation
• extra_score_patch : basic::options::OptionKeys::evaluation , evaluation
• extra_score_select : basic::options::OptionKeys::evaluation , evaluation
• extra_scorefxn : basic::options::OptionKeys::wum , wum
• extra_scorefxn_ref_structure : basic::options::OptionKeys::wum , wum
• extra_scorefxn_relax : basic::options::OptionKeys::wum , wum
• extrachi_cutoff : basic::options::OptionKeys::packing , packing
• extract_coordinates_from_pose_1x3() : pyrosetta::toolbox::extract_coords_pose , toolbox::extract_coords_pose
• extract_coordinates_from_pose_3x1() : pyrosetta::toolbox::extract_coords_pose , toolbox::extract_coords_pose
• extract_coords() : PyMOLPyRosettaServer
• extract_native_only : basic::options::OptionKeys::strand_assembly , strand_assembly
• extract_pdb_from_sqlite3db() : app::pyrosetta_toolkit::modules::tools::output
• extract_pdbs_from_sqlite3db() : app::pyrosetta_toolkit::modules::tools::output
• extractChains() : loadPDB
• extractor : tools::doxygen
• extractResidues() : loadPDB