Here is a list of all namespace members with links to the namespace documentation for each member:
- g -
- G()
: ObjexxFCL::format
- galactose
: test::C001_Carbohydrates_Demo01
- gamma
: loops
, loops_kic
, test::T650_LoopsKIC
- gamma_increment
: basic::options::OptionKeys::sample_around
, sample_around
- gapspan
: basic::options::OptionKeys::loops
, loops
- gaussian()
: numeric::random
- gaussian_random_xform()
: numeric::random
- GB_GET_ALL_BORN_RADII
: basic
- GB_SETUP_FOR_PACKING
: basic
- GCC_XML_main()
: tools::CppParser
- gcd()
: numeric
, ObjexxFCL
- gdtmm
: basic::options::OptionKeys::cluster
, basic::options::OptionKeys::evaluation
, cluster
, evaluation
- gdttm
: basic::options::OptionKeys::evaluation
, evaluation
- ge_tol()
: numeric
, ObjexxFCL
- GEN_BORN_ROTAMER_BACKGROUND_ENERGIES
: basic
- GEN_BORN_ROTAMER_PAIR_ENERGIES
: basic
- gen_pep_bb_sequential
: basic::options::OptionKeys::pepspec
, pepspec
- gen_pharmacophore
: basic::options::OptionKeys::gen_pharmacophore
, gen_pharmacophore
- gen_reverse_motifs_on_load
: basic::options::OptionKeys::mh
, mh
- general()
: ObjexxFCL::format
- general_dihedral_cst_phi_sd()
: antibody
, basic::options::OptionKeys::antibody
- general_dihedral_cst_psi_sd()
: antibody
, basic::options::OptionKeys::antibody
- general_Fstring_of()
: ObjexxFCL
- general_string_of()
: ObjexxFCL
- generate_bindings()
: build
- generate_cmake_file()
: build
- generate_comment_for_declaration()
: binder
- generate_documentation_string_for_declaration()
: binder
- generate_include_directives()
: binder
- generate_monolith_main()
: tools::CppParser
- generate_monolith_module()
: tools::CppParser
- generate_nonstandard_residue_set()
: demo::D120_Ligand_interface
, pyrosetta
, pyrosetta::toolbox::load_ligand
, src
, toolbox::load_ligand
- generate_one_model()
: loadPDB
- generate_resfile_from_pdb()
: demo::D050_Packer_task
, pyrosetta::toolbox::generate_resfile
, pyrosetta::toolbox
, toolbox::generate_resfile
, toolbox
- generate_resfile_from_pose()
: demo::D050_Packer_task
, pyrosetta::toolbox::generate_resfile
, pyrosetta::toolbox
, toolbox::generate_resfile
, toolbox
- generate_rosetta_cmake_files()
: build
- generate_rosetta_external_cmake_files()
: build
- generateIncludes()
: tools::CppParser
- generatePDB()
: loadPDB
- generations
: basic::options::OptionKeys::ms
, ms
- generic_aa
: basic::options::OptionKeys::remodel
, remodel
- generic_job_name
: basic::options::OptionKeys::jd2
, jd2
- generous_hbonds
: basic::options::OptionKeys::bunsat_calc2
, bunsat_calc2
- genkic_closure_attempts
: basic::options::OptionKeys::cyclic_peptide
, cyclic_peptide
- genkic_min_solution_count
: basic::options::OptionKeys::cyclic_peptide
, cyclic_peptide
- geom_csts_downstream_output
: basic::options::OptionKeys::match
, match
- geom_sol_interres_path_distance_cutoff
: basic::options::OptionKeys::score
, score
- geom_sol_intrares_path_distance_cutoff
: basic::options::OptionKeys::score
, score
- geometric_constraint_file
: basic::options::OptionKeys::match
, match
- GES
: amino_acids
- get
: extract_scores_and_constraints
, fmt::internal
, ObjexxFCL
- get2
: extract_scores_and_constraints
- get_all_exit_callbacks()
: utility
- get_all_rosetta_objs()
: BuildBindings
- get_atom2_num()
: make_amb_constr
- get_binding_build_root()
: build
- get_boolean_option()
: basic::options
- get_boolean_vector_option()
: basic::options
- get_class_bases()
: exclude
- get_cluster_data()
: numeric
- get_compiler_defines()
: BuildBindings
- get_compiler_family()
: build
- get_current_dylib_path()
: toolbox::adjust_library_path
- get_db_session()
: basic::database
- get_decl_dependencies()
: binder
- get_defines()
: build
- get_direct_childrens()
: tools::CppParser
- get_ends()
: PyMOLPyRosettaServer
- GET_ENERGIES
: basic
- get_file_list()
: setup
- get_file_option()
: basic::options
- get_file_vector_option()
: basic::options
- get_func_def()
: make_amb_constr
- get_hbonds()
: pyrosetta::toolbox
, toolbox
- get_include()
: src
- get_index()
: loadPDB
- get_int()
: utility::json_spirit
- get_integer_option()
: basic::options
- get_integer_vector_option()
: basic::options
- get_lines_from_file_data()
: utility::io
- get_markers()
: app::surface_docking::surf_param
- get_mArray()
: utility::json_spirit
- get_mObject()
: utility::json_spirit
- get_num_digits()
: utility
- get_option()
: basic::options
- get_option_from_map()
: basic::resource_manager
- get_pdb_list_from_dir()
: app::pyrosetta_toolkit::modules::tools::input
- get_percentile_bounds()
: numeric::kdtree
- get_procs_per_case()
: arls_impl
- get_profile_fname()
: setup_pyrosetta
- get_pymol_chain()
: basic
- get_pymol_chain_index_1()
: basic
- get_pymol_num_unique_ids()
: basic
- get_real()
: utility::json_spirit
- get_real_option()
: basic::options
- get_real_vector_option()
: basic::options
- get_residuetypeset_from_path_array()
: app::pyrosetta_toolkit::modules::tools::input
- get_resnum_and_chain()
: utility
- get_resnum_and_chain_from_one_tag()
: utility
- get_resnum_and_segid()
: utility
- get_resnum_and_segid_from_one_tag()
: utility
- get_resource()
: basic::resource_manager
- get_rosetta_database_path()
: pyrosetta
, src
- get_rosetta_include_directories()
: build
- get_rosetta_system_include_directories()
: build
- get_score_function
: pyrosetta
- get_scratch_buff()
: numeric::fourier
- get_secstruct()
: pyrosetta::toolbox
, toolbox
- get_sequence()
: app::pyrosetta_toolkit::modules::tools::sequence
- get_set_from_datamap()
: basic::datacache
- get_str()
: utility::json_spirit
- get_str_()
: utility::json_spirit
- get_string()
: utility::json_spirit
- get_string_option()
: basic::options
- get_string_or_empty()
: utility::json_spirit
- get_string_vector_option()
: basic::options
- get_test_files()
: self-test
- get_text()
: binder
- get_tmp_buff()
: numeric::fourier
- get_type_dependencies()
: binder
- get_undefined_real()
: utility
- get_undefined_size()
: utility
- get_usage_from_procfilesystem()
: basic
- get_value()
: utility::json_spirit
, utility::json_spirit::internal_
- get_vc_compile_options()
: BuildBindings
- get_vc_link_options()
: BuildBindings
- get_windows_compile_command_line()
: BuildBindings
- get_windows_link_command_line()
: BuildBindings
- getAllRosettaSourceFiles()
: BuildBindings
- getAtoms
: calccontacts
- GetAtoms()
: PDBInfo
- GetAtomTypeInfo()
: PDBInfo
- getCAlist()
: loadPDB
- getCentroid()
: loadPDB
- getCompilerOptions()
: BuildBindings
, BuildPackagedBindings
- getContext()
: tools::CppParser
- getDist()
: app::pyrosetta_toolkit::modules::tools::general_tools
- getDistGen()
: app::pyrosetta_toolkit::modules::tools::general_tools
- getDoxygenComment()
: tools::doxygen
- getDoxygenPage()
: options_class
- getFile()
: tools::CppParser
- getFragLists()
: app::pyrosetta_toolkit::window_modules::protocol_builder::ProtocolBuilder
- getIncludes()
: exclude
- getKind()
: tools::CppParser
- getLigands()
: loadPDB
- getline()
: ObjexxFCL
, utility::io
- getLinkerOptions()
: BuildBindings
, BuildPackagedBindings
- getMapFunction()
: make_templates
- getMarkdownPage()
: options_class
- getNameSpace()
: exclude
- getOS()
: app::pyrosetta_toolkit::modules::tools::general_tools
- getpagesize()
: fmt
- getPlatformIncludePath()
: BuildPackagedBindings
- getProtocolLists()
: app::pyrosetta_toolkit::window_modules::protocol_builder::ProtocolBuilder
- getPureTypeName()
: tools::CppParser
- GetResidueAtoms()
: PDBInfo
- getSequence()
: loadPDB
- getVectorFunction()
: make_templates
- GF
: test::T250_Constraints
- ghost_loops
: basic::options::OptionKeys::stepwise::protein
, stepwise::protein
- give_up
: basic::options::OptionKeys::fast_loops
, fast_loops
- global_atom_pair_cst_scoring()
: antibody::design
, basic::options::OptionKeys::antibody::design
- global_dihedral_cst_scoring()
: antibody::design
, basic::options::OptionKeys::antibody::design
- global_optimize
: basic::options::OptionKeys::stepwise::protein
, stepwise::protein
- global_sample_res_list
: basic::options::OptionKeys::stepwise::rna
, stepwise::rna
- glu_hack
: mrlo
- glucose
: test::C001_Carbohydrates_Demo01
- glycam_pdb_format
: basic::options::OptionKeys::carbohydrates
, carbohydrates
- glycan_branches
: basic::options::OptionKeys::carbohydrates::clash_check
, carbohydrates::clash_check
- glycan_relax
: basic::options::OptionKeys::carbohydrates::glycan_relax
, carbohydrates::glycan_relax
- glycan_relax_kt
: basic::options::OptionKeys::carbohydrates::glycan_relax
, carbohydrates::glycan_relax
- glycan_relax_movie
: basic::options::OptionKeys::carbohydrates::glycan_relax
, carbohydrates::glycan_relax
- glycan_relax_random_start
: basic::options::OptionKeys::carbohydrates::glycan_relax
, carbohydrates::glycan_relax
- glycan_relax_rounds
: basic::options::OptionKeys::carbohydrates::glycan_relax
, carbohydrates::glycan_relax
- glycan_relax_sugar_bb_start
: basic::options::OptionKeys::carbohydrates::glycan_relax
, carbohydrates::glycan_relax
- glycan_relax_test
: basic::options::OptionKeys::carbohydrates::glycan_relax
, carbohydrates::glycan_relax
- goodnames
: pyrosetta::toolbox::make_rna_rosetta_ready
, toolbox::make_rna_rosetta_ready
- gpu
: basic::options::OptionKeys::gpu
, gpu
- gpu_processor
: basic::options::OptionKeys::score::fiber_diffraction
, score::fiber_diffraction
- gradnorm()
: numeric::crick_equations
- gradual_constraints
: basic::options::OptionKeys::rna::farna
, rna::farna
- graft_h1()
: antibody
, basic::options::OptionKeys::antibody
- graft_h2()
: antibody
, basic::options::OptionKeys::antibody
- graft_h3()
: antibody
, basic::options::OptionKeys::antibody
- graft_l1()
: antibody
, basic::options::OptionKeys::antibody
- graft_l2()
: antibody
, basic::options::OptionKeys::antibody
- graft_l3()
: antibody
, basic::options::OptionKeys::antibody
- grafting_database()
: antibody
, basic::options::OptionKeys::antibody
- graphics
: basic::options::OptionKeys::boinc
, boinc
- GreaterThanConstraintCOP
: basic::database::schema_generator
- GreaterThanConstraintOP
: basic::database::schema_generator
- GREEN
: fmt
- grid
: basic::options::OptionKeys::docking::ligand::grid
, docking::ligand::grid
- grid_angle_multiplier
: basic::options::OptionKeys::lh
, lh
- grid_boundary
: basic::options::OptionKeys::match
, match
- grid_dir
: basic::options::OptionKeys::qsar
, qsar
- grid_ensemble
: basic::options::OptionKeys::jd2
, jd2
- grid_kin
: basic::options::OptionKeys::docking::ligand::grid
, docking::ligand::grid
- grid_map
: basic::options::OptionKeys::docking::ligand::grid
, docking::ligand::grid
- grid_nsamp_angle
: basic::options::OptionKeys::matdes::design
, matdes::design
- grid_nsamp_radius
: basic::options::OptionKeys::matdes::design
, matdes::design
- grid_phi
: basic::options::OptionKeys::score::fiber_diffraction
, score::fiber_diffraction
- grid_r
: basic::options::OptionKeys::score::fiber_diffraction
, score::fiber_diffraction
- grid_reso
: basic::options::OptionKeys::score::fiber_diffraction
, score::fiber_diffraction
- grid_size_angle
: basic::options::OptionKeys::matdes::design
, matdes::design
- grid_size_radius
: basic::options::OptionKeys::matdes::design
, matdes::design
- grid_space_multiplier
: basic::options::OptionKeys::lh
, lh
- grid_spacing
: basic::options::OptionKeys::edensity
, edensity
- grid_vdw_weight
: basic::options::OptionKeys::rna::farna
, rna::farna
- grid_z
: basic::options::OptionKeys::score::fiber_diffraction
, score::fiber_diffraction
- gridligpath
: basic::options::OptionKeys::loodo
, loodo
- grouper_downstream_rmsd
: basic::options::OptionKeys::match
, match
- grow_attempts
: basic::options::OptionKeys::loops
, loops
- grp_cpfxn
: basic::options::OptionKeys::score
, score
- grpelec_context_dependent
: basic::options::OptionKeys::score
, score
- grpelec_cpfxn_weight
: basic::options::OptionKeys::score
, score
- grpelec_fade_hbond
: basic::options::OptionKeys::score
, score
- grpelec_fade_param1
: basic::options::OptionKeys::score
, score
- grpelec_fade_param2
: basic::options::OptionKeys::score
, score
- grpelec_fade_type
: basic::options::OptionKeys::score
, score
- grpelec_max_qeps
: basic::options::OptionKeys::score
, score
- gt_tol()
: numeric
, ObjexxFCL
- gterm2
: test::T250_Constraints
- GTPase_residue
: basic::options::OptionKeys::chemically_conjugated_docking
, chemically_conjugated_docking
- GTPasepdb
: basic::options::OptionKeys::chemically_conjugated_docking
, chemically_conjugated_docking
- guarantee_no_DNA
: basic::options::OptionKeys::in
, in
- guess_disulfides()
: demo::D060_Folding
- gunzip()
: utility::file
- gush
: basic::options
- gz
: basic::options::OptionKeys::ms::checkpoint
, ms::checkpoint
- gz_ascii_flag
: zlib_stream::detail
- gz_comment
: zlib_stream::detail
- gz_extra_field
: zlib_stream::detail
- gz_head_crc
: zlib_stream::detail
- gz_magic
: zlib_stream::detail
- gz_orig_name
: zlib_stream::detail
- gz_reserved
: zlib_stream::detail
- gzip()
: utility::file