Here is a list of all namespace members with links to the namespace documentation for each member:

- t -

• t : basic::options::OptionKeys::in::file
• T() : basic
• t() : in::file
• T : test::T007_TracerIO , tools::CppParser
• t_debug : basic
• t_error : basic
• t_fatal : basic
• t_info : basic
• t_trace : basic
• t_warning : basic
• TAB() : ObjexxFCL
• table : app::pyrosetta_toolkit::modules::SQLPDB , utility::options::OptionKeys::options::table
• table_exists() : basic::database
• taboo_in_fa : basic::options::OptionKeys::loops , loops
• taboo_sampling : basic::options::OptionKeys::loops , loops
• tag : basic::options::OptionKeys::matdes , basic::options::OptionKeys::resample , basic::options::OptionKeys::rna::farna , basic::options::OptionKeys::rot_anl , matdes , resample , rna::farna , rot_anl
• tag2string : basic
• TagAP : utility::tag
• TagCAP : utility::tag
• TagCOP : utility::tag
• tagfile : basic::options::OptionKeys::in::file , in::file
• taglist : basic::options::OptionKeys::willmatch , willmatch
• TagOP : utility::tag
• TagPtr : utility::tag
• tags : basic::options::OptionKeys::in::file , in::file
• tags1 : basic::options::OptionKeys::stepwise , stepwise
• tags2 : basic::options::OptionKeys::stepwise , stepwise
• tail_mode : basic::options::OptionKeys::krassk , krassk
• tail_mode_name : basic::options::OptionKeys::krassk , krassk
• tail_output_file_name : basic::options::OptionKeys::krassk , krassk
• TailSegment : basic::options::OptionKeys::TailSegment , TailSegment
• talos_cs : basic::options::OptionKeys::in::file , in::file
• talos_phi_psi : basic::options::OptionKeys::in::file , in::file
• target : basic::options::OptionKeys::hotspot , hotspot
• target_aa : basic::options::OptionKeys::motifs , motifs
• target_dist : basic::options::OptionKeys::hotspot , hotspot
• target_dna_defs : basic::options::OptionKeys::motifs , motifs
• target_net_charge : local
• target_net_charge_active : local
• target_pdb : basic::options::OptionKeys::AnchoredPDBCreator
• target_res : basic::options::OptionKeys::hotspot , hotspot
• target_residues : basic::options::OptionKeys::in , in
• targetdir : basic::options::OptionKeys::evolution , evolution
• task : app::delta_score_per_mutation , test::G200_Module_Region
• task_design : test::T500_Packing , test::Workshop6test
• task_operations : basic::options::OptionKeys::task_operations , task_operations
• task_pack : loops , loops_kic , test::T500_Packing , test::T650_LoopsKIC , test::Workshop6test
• tasks : make_templates
• temp_final : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temp_initial : basic::options::OptionKeys::MonteCarlo , MonteCarlo
• temp_pose : app::delta_score_per_mutation
• temperature() : abinitio , basic::options::OptionKeys::abinitio , basic::options::OptionKeys::ddg , basic::options::OptionKeys::docking , basic::options::OptionKeys::loops::ccd , basic::options::OptionKeys::magnesium::montecarlo , basic::options::OptionKeys::remodel::RemodelLoopMover , basic::options::OptionKeys::rigid , basic::options::OptionKeys::rna::farna , basic::options::OptionKeys::smhybrid , basic::options::OptionKeys::stepwise::monte_carlo , ddg , docking , loops::ccd , magnesium::montecarlo , remodel::RemodelLoopMover , rigid , rna::farna , smhybrid , stepwise::monte_carlo
• template_argument_to_string() : binder
• template_pdb : basic::options::OptionKeys::in::file , in::file
• template_scores : basic::options::OptionKeys::cluster , cluster
• template_silent : basic::options::OptionKeys::in::file , in::file
• template_specialization() : binder
• templates : basic::options::OptionKeys::templates , templates
• tensor_weight : basic::options::OptionKeys::rdc , rdc
• terminal_res : basic::options::OptionKeys::full_model::rna , full_model::rna
• termini : basic::options::OptionKeys::mp , mp
• test : app::pyrosetta_toolkit::window_modules::options_system::OptionSystemManager , PyMOL_demo , test::Workshop5test
• TEST1 : basic
• TEST2 : basic
• test2 : test::Workshop5test
• TEST3 : basic
• TEST4 : basic
• TEST5 : basic
• test_all_moves : basic::options::OptionKeys::stepwise , stepwise
• test_bondangle() : numeric::kinematic_closure
• test_bridgeObjects() : numeric::kinematic_closure
• test_chainParams() : numeric::kinematic_closure
• test_chainTORS() : numeric::kinematic_closure
• test_chainXYZ() : numeric::kinematic_closure
• test_cross() : numeric::kinematic_closure
• test_cycles : basic::options::OptionKeys::run , run
• test_dixon() : numeric::kinematic_closure
• test_encapsulation : basic::options::OptionKeys::stepwise , stepwise
• test_eucDistance() : numeric::kinematic_closure
• test_frame() : numeric::kinematic_closure
• test_if_schema_is_valid() : utility::tag
• test_name() : self-test , TestBindings
• test_point_value2() : numeric::kinematic_closure
• test_polyProduct2x2() : numeric::kinematic_closure
• test_polyProduct4sq() : numeric::kinematic_closure
• test_polyProduct4x2() : numeric::kinematic_closure
• test_polyProduct4x4() : numeric::kinematic_closure
• test_polyProduct6x6() : numeric::kinematic_closure
• test_pose : test::T220_AtomAtomPairEnergies , test::Workshop9test
• test_rotateX() : numeric::kinematic_closure
• test_scpn() : numeric::kinematic_closure
• test_sincos() : numeric::kinematic_closure
• test_suite : app::pyrosetta_toolkit::modules::prettytable::setup
• test_torsion() : numeric::kinematic_closure
• test_triangle() : numeric::kinematic_closure
• test_triaxialCoefficients() : numeric::kinematic_closure
• testing() : AnchoredDesign::testing , basic::options::OptionKeys::AnchoredDesign::testing , basic::options::OptionKeys::testing , testing
• tether_jump : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• tether_ligand : basic::options::OptionKeys::docking::ligand , docking::ligand
• tether_to_closest_res : basic::options::OptionKeys::magnesium , magnesium
• text : utility::options::OptionKeys::options::table
• tf : test::G200_Module_Region , test::T500_Packing
• tgt_amino : basic::options::OptionKeys::pose_metrics::shobuns , pose_metrics::shobuns
• tgt_atom : basic::options::OptionKeys::pose_metrics::shobuns , pose_metrics::shobuns
• tgt_res : basic::options::OptionKeys::pose_metrics::shobuns , pose_metrics::shobuns
• thickness : basic::options::OptionKeys::membrane , basic::options::OptionKeys::mp , basic::options::OptionKeys::mp::viewer , basic::options::OptionKeys::mp::visualize , membrane , mp , mp::viewer , mp::visualize
• thinout_factor : basic::options::OptionKeys::cluster , cluster
• thorough : basic::options::OptionKeys::relax , relax
• thread_unaligned : basic::options::OptionKeys::james , james
• threads : basic::options::OptionKeys::gpu , basic::options::OptionKeys::packstat , gpu , packstat
• threadsc : basic::options::OptionKeys::threadsc , threadsc
• three_fold_symmetry_90_210_330 : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• threshold : basic::options::OptionKeys::hotspot , hotspot , revert_app
• threshold_for_boost_closure : basic::options::OptionKeys::remodel::RemodelLoopMover , remodel::RemodelLoopMover
• throw_error() : utility::json_spirit
• throw_exception() : boost
• tilt : basic::options::OptionKeys::docking , docking
• tilt1_center : basic::options::OptionKeys::docking , docking
• tilt2_center : basic::options::OptionKeys::docking , docking
• tilt_angle : basic::options::OptionKeys::mp::benchmark::tilt_angle , mp::benchmark::tilt_angle
• time_diff : app::surface_docking::surface_docking
• time_end : app::surface_docking::surface_docking
• time_start : app::surface_docking::surface_docking
• timer : basic::options::OptionKeys::loops , basic::options::OptionKeys::run , loops , run
• timestamp() : utility
• timestamp_short() : utility
• tk_get_directory() : app::pyrosetta_toolkit::modules::tools::input
• tk_get_file() : app::pyrosetta_toolkit::modules::tools::input
• TMprojection : basic::options::OptionKeys::mp , mp
• to_centroid : docking , loops , loops_kic , test::T600_Docking , test::T650_LoopsKIC
• to_degrees() : numeric::conversions , numeric::kinematic_closure::radians
• to_fullatom : docking , loops , loops_kic , test::T650_LoopsKIC
• to_hex_char() : utility::json_spirit
• to_radians() : numeric::conversions , numeric::kinematic_closure::radians
• to_str() : utility::json_spirit
• to_string() : utility
• toCen() : app::pyrosetta_toolkit::modules::tools::protocols
• toDeg() : coordlib
• toFA() : app::pyrosetta_toolkit::modules::tools::protocols
• token_type_name() : numeric::expression_parser
• TokenCOP : numeric::expression_parser
• TokenOP : numeric::expression_parser
• TokenSetCOP : numeric::expression_parser
• TokenSetOP : numeric::expression_parser
• TokenType : numeric::expression_parser
• tol : loops_kic , test::T650_LoopsKIC
• tolerance : basic::options::OptionKeys::loops::ccd , loops::ccd
• top : test::G204_Module_ScoreAnalysis
• top_designs() : antibody::design , basic::options::OptionKeys::antibody::design
• topN : basic::options::OptionKeys::templates::cst , basic::options::OptionKeys::templates::fragsteal , templates::cst , templates::fragsteal
• topology_file : basic::options::OptionKeys::jumps , jumps
• topology_rank_cutoff : basic::options::OptionKeys::templates , templates
• tops : test::G204_Module_ScoreAnalysis
• toRad() : coordlib
• torsion() : coordlib , numeric::kinematic_closure::radians , numeric::kinematic_closure
• torsion_bin_probs : basic::options::OptionKeys::in::file , in::file
• torsion_thresholds : basic::options::OptionKeys::james , james
• torsionsMCM : basic::options::OptionKeys::flexPepDocking , flexPepDocking
• TOTAL : basic
• total_clock : basic
• total_weight : basic::options::OptionKeys::rdc , rdc
• TR() : basic::database::schema_generator , basic::database , basic::datacache
• tr() : basic::datacache
• TR() : basic::mpi , basic::options , basic::resource_manager::locator , basic::resource_manager , basic
• TR_hh() : basic::datacache
• TracerPriority : basic
• Traits : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• trajectory() : backrub , basic::options::OptionKeys::backrub
• trajectory_gz() : backrub , basic::options::OptionKeys::backrub
• trajectory_stride() : backrub , basic::options::OptionKeys::backrub
• trans_mag_smooth : basic::options::OptionKeys::fold_and_dock , fold_and_dock
• trans_magnitude : basic::options::OptionKeys::enzdes , enzdes
• transaction_mode_from_name() : utility::sql_database
• transactionCOP : utility::sql_database
• transactionOP : utility::sql_database
• transform : basic::options::OptionKeys::mp::transform , mp::transform
• transform_into_membrane : basic::options::OptionKeys::mp::setup , mp::setup
• transform_percentile() : numeric::kdtree
• transform_percentile_single_pt() : numeric::kdtree
• transformCoords() : loadPDB
• transformResCoords() : loadPDB
• transition_threshold : basic::options::OptionKeys::canonical_sampling::sampling , canonical_sampling::sampling
• Translate_to_center() : app::surface_docking::surf_param
• Translate_up() : app::surface_docking::surf_param
• translatePDB() : loadPDB
• translation : basic::options::OptionKeys::rigid , demo::D100_Docking , rigid
• transpose_product() : numeric
• transpose_so3() : numeric::fourier
• transposed() : ObjexxFCL
• treat_residues_in_these_chains_as_separate_chemical_entities : basic::options::OptionKeys::in::file , in::file
• trg_anchor : basic::options::OptionKeys::threadsc , threadsc
• trg_chain : basic::options::OptionKeys::threadsc , threadsc
• trg_first_resid : basic::options::OptionKeys::threadsc , threadsc
• trial : demo::D060_Folding
• trial_mover : test::Workshop5test
• trial_output : demo::D090_Ala_scan
• trialmover : test::T400_Refinement , test::Workshop5test
• trials : demo::D090_Ala_scan
• triangle() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• triaxialCoefficients() : numeric::kinematic_closure::radians , numeric::kinematic_closure
• trim() : ObjexxFCL , utility
• trim_proportion : basic::options::OptionKeys::wum , wum
• trim_whitespace() : ObjexxFCL
• trimmed() : ObjexxFCL
• trimmed_compare() : utility
• trimmed_whitespace() : ObjexxFCL
• true_negative : numeric
• true_positive : numeric
• truefalseoption() : basic::options
• truncate_and_serialize_xyz_vector() : numeric
• TRUNCATED_SCORE_EVALUATOR : basic
• trytry_ifstream_open() : utility::file
• trytry_ofstream_open() : utility::file
• turn_off_rna_chem_map_during_optimize : basic::options::OptionKeys::stepwise::rna , stepwise::rna
• tweak_sxfn : basic::options::OptionKeys::docking::ligand , docking::ligand
• two : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• two_body : basic::options::OptionKeys::rotamerdump , rotamerdump
• two_chain_tree : basic::options::OptionKeys::remodel , remodel
• two_fold_symmetry_0_180 : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• two_fold_symmetry_135_315 : basic::options::OptionKeys::make_rot_lib , make_rot_lib
• two_ubiquitins : basic::options::OptionKeys::chemically_conjugated_docking , chemically_conjugated_docking
• type : basic::options::OptionKeys::frags::contacts , frags::contacts
• Type : numeric::constants::d , numeric::constants::f , numeric::constants::ld , numeric::constants::r
• type_ : tools::CppParser
• type_of() : ObjexxFCL
• type_of< char >() : ObjexxFCL
• type_of< std::string >() : ObjexxFCL
• typename_from_type_decl() : binder