PlaceStubMover.cc File Reference

#include <protocols/protein_interface_design/movers/PlaceStubMover.hh>
#include <protocols/protein_interface_design/movers/PlaceStubMoverCreator.hh>
#include <utility>
#include <utility/tag/Tag.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/ref_pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/id/AtomID.hh>
#include <core/chemical/AA.hh>
#include <protocols/protein_interface_design/movers/PlaceUtils.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/datacache/DataMapObj.hh>
#include <protocols/moves/ResId.hh>
#include <core/scoring/constraints/BackboneStubConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/constraints/AmbiguousConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/hotspot_hashing/HotspotStub.hh>
#include <protocols/moves/MoverStatus.hh>
#include <protocols/protein_interface_design/movers/SetAtomTree.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <utility/exit.hh>
#include <protocols/jd2/util.hh>
#include <protocols/filters/Filter.hh>
#include <protocols/filters/BasicFilters.hh>
#include <protocols/protein_interface_design/design_utils.hh>
#include <protocols/protein_interface_design/movers/BuildAlaPose.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/hotspot.OptionKeys.gen.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <algorithm>
#include <core/pose/variant_util.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <numeric/NumericTraits.hh>
#include <basic/Tracer.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/simple_filters/EnergyPerResidueFilter.hh>
#include <protocols/score_filters/ScoreTypeFilter.hh>
#include <protocols/calc_taskop_movers/DesignRepackMover.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <core/kinematics/Jump.hh>
#include <core/pack/task/ResidueLevelTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::protein_interface_design
	protocols::protein_interface_design::movers

Functions
static basic::Tracer	TR ("protocols.protein_interface_design.movers.PlaceStubMover")
static basic::Tracer	stats_TR ("STATS.PlaceStubMover")
static basic::Tracer	TR_debug ("DEBUG.PlaceStubMover")
std::string	protocols::protein_interface_design::movers::PlaceStub_subelement_mangler (std::string const &element)
std::string	protocols::protein_interface_design::movers::PlaceStub_StubMinimize_subelement_mangler (std::string const &element)
std::string	protocols::protein_interface_design::movers::PlaceStub_DesignMovers_subelement_mangler (std::string const &element)
std::string	protocols::protein_interface_design::movers::PlaceStub_NotifyMovers_subelement_mangler (std::string const &element)

Detailed Description

Author

Sarel Fleishman (sarel.nosp@m.f@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu), Jacob Corn (jecor.nosp@m.n@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu), Eva-Maria Strauch (evas0.nosp@m.1@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Function Documentation

stats_TR()

static basic::Tracer stats_TR ( "STATS.PlaceStubMover"  )

static

Referenced by protocols::protein_interface_design::movers::PlaceStubMover::apply(), and protocols::protein_interface_design::movers::PlaceStubMover::StubMinimize().

TR()

static basic::Tracer TR ( "protocols.protein_interface_design.movers.PlaceStubMover"  )

static

TR_debug()

static basic::Tracer TR_debug ( "DEBUG.PlaceStubMover"  )

static

Referenced by protocols::protein_interface_design::movers::PlaceStubMover::add_coordinate_constraints_for_res_stub(), protocols::protein_interface_design::movers::PlaceStubMover::apply(), protocols::protein_interface_design::movers::PlaceStubMover::place_stub(), protocols::protein_interface_design::movers::PlaceStubMover::refresh_coordinate_constraints(), and protocols::protein_interface_design::movers::PlaceStubMover::StubMinimize().