Here is a list of all namespace members with links to the namespace documentation for each member:

- g -

• G : protocols::comparative_modeling::features
• gap_distance() : protocols::hybridization
• GasConst : protocols::md
• gather_coords() : protocols::comparative_modeling
• GatherPosesMoverCOP : protocols::cluster
• GatherPosesMoverOP : protocols::cluster
• Gaussian : protocols::ligand_docking
• gaussian_jump_move() : protocols::rigid
• geneate_pose_from_old_state : protocols::pack_daemon
• general_set_phi() : protocols::generalized_kinematic_closure
• general_set_psi() : protocols::generalized_kinematic_closure
• GeneralizedKICCOP : protocols::generalized_kinematic_closure
• GeneralizedKICCOPs : protocols::generalized_kinematic_closure
• GeneralizedKICfilterCOP : protocols::generalized_kinematic_closure::filter
• GeneralizedKICfilterCOPs : protocols::generalized_kinematic_closure::filter
• GeneralizedKICfilterOP : protocols::generalized_kinematic_closure::filter
• GeneralizedKICfilterOPs : protocols::generalized_kinematic_closure::filter
• GeneralizedKICOP : protocols::generalized_kinematic_closure
• GeneralizedKICOPs : protocols::generalized_kinematic_closure
• GeneralizedKICperturberCOP : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICperturberCOPs : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICperturberOP : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICperturberOPs : protocols::generalized_kinematic_closure::perturber
• GeneralizedKICselectorCOP : protocols::generalized_kinematic_closure::selector
• GeneralizedKICselectorCOPs : protocols::generalized_kinematic_closure::selector
• GeneralizedKICselectorOP : protocols::generalized_kinematic_closure::selector
• GeneralizedKICselectorOPs : protocols::generalized_kinematic_closure::selector
• generate_atom_positions() : protocols::helical_bundle
• generate_bb_coordinate_constraints() : protocols::relax
• generate_beta_database_test() : protocols::stepwise::sampler::protein
• generate_centroid_constraints() : protocols::hybridization
• generate_empty_jump_frame() : protocols::jumping
• generate_extended_pose() : protocols::star
• generate_fullatom_constraints() : protocols::hybridization
• generate_jump_frame() : protocols::jumping
• generate_relax_from_cmd() : protocols::relax
• generate_rigid_from_alignment() : protocols::topology_broker
• GENERATE_STATIONARY_ATTACHMENT_POINT : protocols::environment
• generate_taskfactory_and_add_task_awareness() : protocols::protein_interface_design::movers
• generate_unique_name() : protocols::ligand_docking
• generate_unique_structure_id() : protocols::wum
• GenerateStoredRBConfsCOP : protocols::enzdes
• GenerateStoredRBConfsOP : protocols::enzdes
• GenericJobInputterOP : protocols::jd2
• GenericMonteCarloMoverCOP : protocols::simple_moves
• GenericMonteCarloMoverOP : protocols::simple_moves
• GenericMonteCarloMoverTrigger : protocols::simple_moves
• GeneticAlgorithmBaseCOP : protocols::genetic_algorithm
• GeneticAlgorithmBaseOP : protocols::genetic_algorithm
• GeneticAlgorithmCOP : protocols::genetic_algorithm
• GeneticAlgorithmOP : protocols::genetic_algorithm
• GeometricSolvationFeaturesCOP : protocols::features
• GeometricSolvationFeaturesOP : protocols::features
• GeometrySecMatchRPECOP : protocols::match::downstream
• GeometrySecMatchRPEOP : protocols::match::downstream
• GeomSampleInfoCOP : protocols::toolbox::match_enzdes_util
• GeomSampleInfoOP : protocols::toolbox::match_enzdes_util
• get_all_graft_permutations() : protocols::antibody::design
• get_all_residues() : protocols::stepwise::modeler
• get_all_residues_in_this_sheet() : protocols::features::strand_assembly
• get_all_strands_in_sheet_i() : protocols::features::strand_assembly
• get_all_working_moving_res() : protocols::stepwise::modeler
• get_anchor_res() : protocols::stepwise::modeler::rna
• get_aro_residues_in_this_sheet() : protocols::features::strand_assembly
• get_atom_coordinates() : protocols::toolbox::rigid_body
• get_avg_dis_CA_CA() : protocols::features::strand_assembly
• get_avg_dis_strands() : protocols::features::strand_assembly
• get_base_centroid_and_rotation_matrix() : protocols::toolbox::rigid_body
• get_base_pairing_info() : protocols::farna
• get_base_pairing_list() : protocols::farna
• get_basic_protein_sampler() : protocols::stepwise::sampler::protein
• get_batch_id() : protocols::features
• get_bbcsts() : protocols::protein_interface_design
• get_binary_rna_silent_struct_safe() : protocols::stepwise::modeler::rna
• get_binary_rna_silent_struct_safe_wrapper() : protocols::stepwise::modeler::rna
• get_bounds_intersection() : protocols::sic_dock
• get_branching_atoms2() : protocols::branch_angle
• get_bridge_res() : protocols::stepwise::modeler::protein
• get_CA_vectors() : protocols::jumping
• get_CB_Vecs_from_map() : protocols::sic_dock
• get_CB_Vecs_from_pose() : protocols::sic_dock
• get_cdr_loops() : protocols::antibody
• get_cdr_set_options() : protocols::antibody::design
• get_cen_scorefxn() : protocols::loops
• get_central_residues_in_each_of_two_edge_strands() : protocols::features::strand_assembly
• get_central_residues_in_other_sheet() : protocols::features::strand_assembly
• get_central_residues_in_this_sheet() : protocols::features::strand_assembly
• get_chain() : protocols::stepwise::setup
• get_chain_and_z() : protocols::membrane::geometry
• get_chain_B_resNum() : protocols::features::strand_assembly
• get_cheating_frags() : protocols::frags
• get_chiral_residue_type() : protocols::simple_moves::chiral
• get_closest_distance_between_strands() : protocols::features::strand_assembly
• get_closest_residue_pair() : protocols::seeded_abinitio
• get_concatenated_sequence() : protocols::stepwise::setup
• get_contact_features() : protocols::simple_filters
• get_conventional_chains_and_numbering() : protocols::stepwise::setup
• get_coordinate_system() : protocols::jumping
• get_copy_dofs_from_fasta() : protocols::stepwise::modeler::rna
• get_core() : protocols::abinitio
• get_current_bs_id_and_closest_edge_bs_id_in_different_sheet() : protocols::features::strand_assembly
• get_current_job() : protocols::jd2
• get_current_jobs_starting_pose() : protocols::jd2
• get_current_model_score() : protocols::features
• get_current_strands_in_sheet() : protocols::features::strand_assembly
• get_current_structure_count() : protocols::features
• get_cutpoint_closed() : protocols::stepwise::modeler
• get_cutpoints() : protocols::stepwise::setup
• get_DB_filter_ptr() : protocols::features
• get_default_allowed_bulge_res() : protocols::farna
• get_deviation() : protocols::loops::loop_closure::ccd
• get_distinct_sheet_id_from_sheet_table() : protocols::features::strand_assembly
• get_distinct_sw_id_from_sandwich_table() : protocols::features::strand_assembly
• get_distribution() : protocols::ligand_docking
• get_dock_chains_from_ab_dock_chains() : protocols::antibody::design
• get_Dock_ScoreFxn() : protocols::antibody
• get_domain_boundary_res() : protocols::stepwise::modeler
• get_domain_boundary_suites() : protocols::stepwise::modeler
• get_endpoints_from_pose() : protocols::stepwise::modeler
• get_enzcst_io() : protocols::enzdes::enzutil
• get_enzdes_observer() : protocols::toolbox::match_enzdes_util
• get_euler_angles() : protocols::toolbox::rigid_body
• get_fa_scorefxn() : protocols::loops
• get_file_name() : protocols::stepwise::modeler
• get_filenames() : protocols::motifs
• get_final_rot_probs() : protocols::make_rot_lib
• get_final_rots() : protocols::make_rot_lib
• get_first_protein_residue() : protocols::toolbox::match_enzdes_util
• get_fixed_res() : protocols::stepwise::legacy::modeler::rna
• get_foldtree_seqsep() : protocols::fldsgn::potentials::sspot
• get_frags() : protocols::frags
• get_full_strands() : protocols::features::strand_assembly
• get_full_strands_from_sheet() : protocols::features::strand_assembly
• get_gdtmm() : protocols::hybridization
• get_graft_design_options() : protocols::antibody::design
• get_harmonic_cluster_constraint_filename() : protocols::antibody::constraints
• get_highest_score_from_job_data_statement() : protocols::features
• get_highest_score_from_score_data_statement() : protocols::features
• get_incomplete_connections() : protocols::ligand_docking
• get_input_res() : protocols::stepwise::legacy::modeler::rna
• get_intra_contacts() : protocols::matdes
• get_jump_partners_from_pose() : protocols::stepwise::modeler
• get_K_cluster_engine() : protocols::toolbox
• get_label() : protocols::ss_prediction
• get_last_protein_residue() : protocols::toolbox::match_enzdes_util
• get_leap_6dof() : protocols::sic_dock
• get_leap_lower_stub() : protocols::sic_dock
• get_leap_upper_stub() : protocols::sic_dock
• get_ligand_seqpos() : protocols::ligand_docking
• get_ligand_torsion_constraints() : protocols::ligand_docking
• get_LigandMotifLibrary_user() : protocols::motifs
• get_list_of_residues_in_sheet_i() : protocols::features::strand_assembly
• get_loop_info() : protocols::mpi_refinement
• get_loop_info_full() : protocols::mpi_refinement
• get_LoopCentral_ScoreFxn() : protocols::antibody
• get_LoopHighRes_ScoreFxn() : protocols::antibody
• get_max_centroid_to_atom_distance() : protocols::stepwise::modeler::rna::rigid_body
• get_max_seq_num_from_res_map() : protocols::stepwise::modeler::rna
• get_max_sheet_id() : protocols::features::strand_assembly
• get_min_and_max_contigs() : protocols::frags
• get_min_nstruct_index_checkpoint_file() : protocols::jd2
• get_mindis_with_plane_hashes() : protocols::sic_dock
• get_minimize_scorefxn() : protocols::stepwise::modeler
• get_modeler_scorefxn() : protocols::stepwise::modeler::rna
• get_motif_build_position_defs_user() : protocols::motifs
• get_motif_build_positions_user() : protocols::motifs
• get_MotifLibrary_user() : protocols::motifs
• get_mover_name() : protocols::environment
• get_moving_res_including_domain_boundaries() : protocols::stepwise::modeler
• get_ncac() : protocols::jumping
• get_next_starting_res_for_connecting_strands() : protocols::features::strand_assembly
• get_nth_lowest_score_from_job_data_statement() : protocols::features
• get_nth_lowest_score_from_score_data_statement() : protocols::features
• get_num_of_distinct_sheet_id() : protocols::features::strand_assembly
• get_num_of_sheets_that_surround_this_sheet() : protocols::features::strand_assembly
• get_num_residues_nonvirt() : protocols::hybridization
• get_num_residues_prot() : protocols::hybridization
• get_num_side_chain_atom_from_res_name() : protocols::stepwise::modeler::rna
• get_num_strands_in_this_sheet() : protocols::features::strand_assembly
• get_one_letter_name() : protocols::stepwise::modeler::rna
• get_op2_op1_sign() : protocols::farna
• get_original_pose_rsd() : protocols::generalized_kinematic_closure
• get_other_poses() : protocols::stepwise::setup
• get_other_residues() : protocols::stepwise::modeler
• get_out_tag() : protocols::vip
• get_output_tag() : protocols::jobdist
• get_overlap_pos() : protocols::loops::loop_closure::ccd
• get_Pack_ScoreFxn() : protocols::antibody
• get_packer() : protocols::stepwise::modeler::packer
• get_pairing_geometry() : protocols::jumping
• get_partition_definition() : protocols::stepwise::modeler
• get_partition_definition_by_jump() : protocols::stepwise::modeler
• get_partition_definition_floating_base() : protocols::stepwise::modeler::rna
• get_pdb_and_cleanup() : protocols::stepwise::setup
• get_pdb_code_from_pose_tag() : protocols::enzdes::enzutil
• get_pdb_numbering_from_string() : protocols::antibody::design
• get_pdb_with_full_model_info() : protocols::stepwise::setup
• get_per_residue_score() : protocols::nonlocal
• get_per_residue_scores() : protocols::relax
• get_phosphate_atom_and_neighbor_list() : protocols::stepwise::modeler::rna::phosphate
• get_phosphate_scorefxn() : protocols::stepwise::modeler::rna::phosphate
• get_pleating() : protocols::jumping
• get_pose_cis_trans_conformation() : protocols::antibody::clusters
• get_possible_O3prime_C5prime_distance_range() : protocols::stepwise::modeler::rna
• get_possible_reference_res_list_from_pose_without_fold_tree() : protocols::stepwise::modeler::rna::sugar
• get_pretend_phi_explicit() : protocols::stepwise::legacy::modeler::protein
• get_pretend_psi_explicit() : protocols::stepwise::legacy::modeler::protein
• get_prob() : protocols::ss_prediction
• get_protocol_and_batch_id() : protocols::features
• get_question_mark_string() : protocols::features
• get_rb_atr_and_rep_scores() : protocols::ligand_docking
• get_reference_res_for_each_virtual_sugar() : protocols::stepwise::modeler::rna::sugar
• get_reference_res_for_each_virtual_sugar_based_on_fold_tree() : protocols::stepwise::modeler::rna::sugar
• get_reference_res_for_each_virtual_sugar_without_fold_tree() : protocols::stepwise::modeler::rna::sugar
• get_res_map() : protocols::stepwise::modeler , protocols::stepwise::modeler::rna::sugar
• get_residue_base_state() : protocols::stepwise::legacy::modeler::rna
• get_residue_from_seq_num() : protocols::stepwise::modeler::rna
• get_residue_pucker_state() : protocols::stepwise::legacy::modeler::rna
• get_resnum_from_cstid() : protocols::enzdes::enzutil
• get_resnum_from_cstid_list() : protocols::enzdes::enzutil
• get_resnum_from_pdb_numbering() : protocols::antibody::design
• get_rg() : protocols::sic_dock
• get_rigid_body_jumps() : protocols::farna
• get_RMSD() : protocols::forge::remodel
• get_rmsd() : protocols::loophash , protocols::stepwise::modeler::align
• get_rna_secstruct() : protocols::farna
• get_rt6() : protocols::sic_dock::scores
• get_rt_over_leap() : protocols::loophash
• get_rt_over_leap_fast() : protocols::loophash
• get_rt_over_leap_without_foldtree_bs() : protocols::loophash
• get_score_for_struct_id_and_score_term_from_job_data() : protocols::features
• get_score_for_struct_id_and_score_term_from_score_data() : protocols::features
• get_score_function_name() : protocols::rosetta_scripts
• get_score_map() : protocols::jobdist
• get_score_normalization_function() : protocols::qsar::scoring_grid
• get_score_type_id_from_score_term() : protocols::features
• get_segment_id() : protocols::features::strand_assembly
• get_seq_design_options() : protocols::antibody::design
• get_sheet_antiparallel_info() : protocols::features::strand_assembly
• get_shortest_among_4_vals() : protocols::features::strand_assembly
• get_silent_file_tags() : protocols::stepwise::legacy::modeler::rna
• get_size_sandwich_PK_id() : protocols::features::strand_assembly
• get_something_from_database() : protocols::features
• get_specific_atom_coordinate() : protocols::toolbox::rigid_body
• get_start_end_res_num_in_the_longest_strand() : protocols::features::strand_assembly
• get_starting_res_for_connecting_strands() : protocols::features::strand_assembly
• get_struct_id_with_highest_score_from_job_data() : protocols::features
• get_struct_id_with_highest_score_from_score_data() : protocols::features
• get_struct_id_with_lowest_score_from_job_data() : protocols::features
• get_struct_id_with_lowest_score_from_score_data() : protocols::features
• get_struct_id_with_nth_lowest_score_from_job_data() : protocols::features
• get_struct_id_with_nth_lowest_score_from_score_data() : protocols::features
• get_structure_count_statement() : protocols::features
• get_sugar_centroid() : protocols::farna
• get_superposition_transformation() : protocols::hybridization
• get_surrounding_O2prime_hydrogen() : protocols::stepwise::modeler::rna
• get_tag() : protocols::features::strand_assembly
• get_tag_and_silent_file_for_struct() : protocols::stepwise::legacy::modeler::rna
• get_tag_from_pdb_filename() : protocols::stepwise::legacy::modeler::rna
• get_target_position_map_make_dna_mutations() : protocols::motifs
• get_target_positions_make_dna_mutations() : protocols::motifs
• get_targetconformers_user() : protocols::motifs
• get_task_operations() : protocols::rosetta_scripts
• get_tenA_neighbor_residues() : protocols::loops
• get_termini_from_pose() : protocols::sic_dock
• get_three_letter_name() : protocols::stepwise::modeler::rna
• get_time() : protocols::wum
• get_touched_res() : protocols::mpi_refinement
• get_tree() : protocols::stepwise::setup
• get_unique_connection_res() : protocols::stepwise::modeler
• get_vec_AA_kind() : protocols::features::strand_assembly
• get_vec_distinct_sheet_id() : protocols::features::strand_assembly
• get_vec_of_sw_can_by_sh_id() : protocols::features::strand_assembly
• get_vector_of_loop_AA_distribution() : protocols::features::strand_assembly
• get_vector_of_strand_AA_distribution() : protocols::features::strand_assembly
• get_working_directory() : protocols::stepwise::legacy::modeler::rna
• get_write_delete_pair() : protocols::features
• get_xform_stats() : protocols::sic_dock
• getAVG() : protocols::sparta
• getDiff() : protocols::sparta
• GetRBDOFValuesCOP : protocols::matdes
• GetRBDOFValuesOP : protocols::matdes
• getRG() : protocols::moves
• getRMS() : protocols::sparta
• getSTD() : protocols::sparta
• getxform() : protocols::sic_dock
• global_loop_rmsd() : protocols::antibody
• glu_corrections() : protocols::make_rot_lib
• GrabAllCollectorCOP : protocols::frag_picker
• GrabAllCollectorOP : protocols::frag_picker
• graft_closed() : protocols::grafting
• GraftCDRLoopsProtocolCOP : protocols::antibody
• GraftCDRLoopsProtocolOP : protocols::antibody
• GraftedStemOptimizerCOP : protocols::antibody
• GraftedStemOptimizerOP : protocols::antibody
• GraftMoverBaseCOP : protocols::grafting
• GraftMoverBaseOP : protocols::grafting
• GraftMoverCOP : protocols::antibody_legacy
• GraftMoverOP : protocols::antibody_legacy
• GraftOneCDRLoopCOP : protocols::antibody
• GraftOneCDRLoopOP : protocols::antibody
• GraftOneMoverCOP : protocols::antibody_legacy
• GraftOneMoverOP : protocols::antibody_legacy
• graphics_main() : protocols::medal , protocols::star
• GreedyKCenterCOP : protocols::toolbox
• GreedyKCenterOP : protocols::toolbox
• GreedyOptMutationMoverCOP : protocols::design_opt
• GreedyOptMutationMoverOP : protocols::design_opt
• GreenPackerCOP : protocols::simple_moves
• GreenPackerOP : protocols::simple_moves
• grid_rotamer_trials() : protocols::ligand_docking
• grid_rotamer_trials_atr_rep() : protocols::ligand_docking
• grid_score() : protocols::ligand_docking
• grid_score_atr_rep() : protocols::ligand_docking
• grid_to_kin() : protocols::ligand_docking
• GridBaseCOP : protocols::qsar::scoring_grid
• GridBaseOP : protocols::qsar::scoring_grid
• GridBaseTracer() : protocols::qsar::scoring_grid
• GridCreatorCOP : protocols::qsar::scoring_grid
• GridCreatorOP : protocols::qsar::scoring_grid
• GridFactoryCOP : protocols::qsar::scoring_grid
• GridFactoryOP : protocols::qsar::scoring_grid
• GridManagerCOP : protocols::qsar::scoring_grid
• GridManagerOP : protocols::qsar::scoring_grid
• GridManagerTracer() : protocols::qsar::scoring_grid
• GridMap : protocols::qsar::scoring_grid
• GridSearchIterator_Ts1COP : protocols::scoring::methods::pcsTs1
• GridSearchIterator_Ts1OP : protocols::scoring::methods::pcsTs1
• GridSearchIterator_Ts2COP : protocols::scoring::methods::pcsTs2
• GridSearchIterator_Ts2OP : protocols::scoring::methods::pcsTs2
• GridSearchIterator_Ts3COP : protocols::scoring::methods::pcsTs3
• GridSearchIterator_Ts3OP : protocols::scoring::methods::pcsTs3
• GridSearchIterator_Ts4COP : protocols::scoring::methods::pcsTs4
• GridSearchIterator_Ts4OP : protocols::scoring::methods::pcsTs4
• GridSearchIteratorCOP : protocols::scoring::methods::pcs2 , protocols::scoring::methods::pcs
• GridSearchIteratorOP : protocols::scoring::methods::pcs2 , protocols::scoring::methods::pcs
• GroupDiscriminatorCOP : protocols::simple_moves
• GroupDiscriminatorOP : protocols::simple_moves
• GroupList : protocols::noesy_assign
• grow() : protocols::ligand_docking
• grow_left_r() : protocols::forge::methods
• grow_left_rtype() : protocols::forge::methods
• grow_ligand_tracer() : protocols::ligand_docking
• grow_right_r() : protocols::forge::methods
• grow_right_rtype() : protocols::forge::methods
• GrowLeftAP : protocols::forge::build
• GrowLeftCAP : protocols::forge::build
• GrowLeftCOP : protocols::forge::build
• GrowLeftOP : protocols::forge::build
• GrowLigandCOP : protocols::ligand_docking
• GrowLigandOP : protocols::ligand_docking
• GrowRightAP : protocols::forge::build
• GrowRightCAP : protocols::forge::build
• GrowRightCOP : protocols::forge::build
• GrowRightOP : protocols::forge::build
• GuardedLoopsFromFileCOP : protocols::loops
• GuardedLoopsFromFileOP : protocols::loops
• guess_rbsegs_from_pose() : protocols::rbsegment_relax